Cow genome map
| Conread name: | Thy1-THY010090H02 |
| Conread position: | 52-802 |
| Cow position: | chrX:6026784-6026037 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 59-364 |
| Cow position: | chrX:37416662-37416348 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 62-378 |
| Cow position: | chrX:7308623-7308951 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 62-790 |
| Cow position: | chrX:30685135-30684420 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 274 |
| Conread position: | 71-538 |
| Cow position: | chrX:23326869-23326411 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 71-801 |
| Cow position: | chrX:10410136-10409412 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 71-802 |
| Cow position: | chrX:32456835-32457559 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 18 |
| Conread position: | 73-442 |
| Cow position: | chrX:18153530-18153164 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 23 |
| Conread position: | 73-446 |
| Cow position: | chrX:10823157-10822789 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 94, 29 |
| Conread position: | 84-800 |
| Cow position: | chrX:509177-508487 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 18 |
| Conread position: | 86-625 |
| Cow position: | chrX:35028215-35028742 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 341 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 112, 16 |
| Conread position: | 102-543 |
| Cow position: | chrX:19650526-19650090 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 74, 209 |
| Conread position: | 102-708 |
| Cow position: | chrX:8421234-8421823 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 383 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 40, 125 |
| Conread position: | 102-795 |
| Cow position: | chrX:25144071-25144743 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 204 |
| Conread position: | 130-536 |
| Cow position: | chrX:31933905-31933489 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 257 |
| Conread position: | 131-515 |
| Cow position: | chrX:21770187-21769791 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 147-753 |
| Cow position: | chrX:21190884-21191500 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 13 |
| Conread position: | 152-547 |
| Cow position: | chrX:1430061-1430459 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 141, 44 |
| Conread position: | 153-697 |
| Cow position: | chrX:24129327-24129887 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 241 |
| Conread position: | 160-380 |
| Cow position: | chrX:26879403-26879628 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 161-439 |
| Cow position: | chrX:25449893-25450163 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 140, 86 |
| Conread position: | 164-787 |
| Cow position: | chrX:25280783-25280179 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 33 |
| Conread position: | 167-796 |
| Cow position: | chrX:17902454-17901840 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 101 |
| Conread position: | 178-572 |
| Cow position: | chrX:38569538-38569927 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 93, 47 |
| Conread position: | 196-548 |
| Cow position: | chrX:47865426-47865064 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 189 |
| Conread position: | 206-449 |
| Cow position: | chrX:17066796-17066556 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 206-806 |
| Cow position: | chrX:21973022-21973617 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 225-762 |
| Cow position: | chrX:32368505-32369022 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 227-566 |
| Cow position: | chrX:11112523-11112191 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 173, 80 |
| Conread position: | 228-474 |
| Cow position: | chrX:21662144-21662385 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 228-765 |
| Cow position: | chrX:19398880-19399419 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 163 |
| Conread position: | 236-799 |
| Cow position: | chrX:36890947-36891501 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 151 |
| Conread position: | 242-562 |
| Cow position: | chrX:11588574-11588248 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 250-581 |
| Cow position: | chrX:37682178-37681855 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 252-733 |
| Cow position: | chrX:42042260-42041788 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 136 |
| Conread position: | 258-690 |
| Cow position: | chrX:36839838-36840268 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 19, 127 |
| Conread position: | 258-733 |
| Cow position: | chrX:23022445-23022921 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 19, 144 |
| Conread position: | 272-799 |
| Cow position: | chrX:23586953-23587456 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 347 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 294-697 |
| Cow position: | chrX:25839518-25839919 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 188, 88 |
| Conread position: | 296-548 |
| Cow position: | chrX:23415519-23415271 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 83 |
| Conread position: | 296-759 |
| Cow position: | chrX:41847354-41846900 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 85 |
| Conread position: | 310-539 |
| Cow position: | chrX:11509026-11509253 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 15, 70 |
| Conread position: | 320-555 |
| Cow position: | chrX:24923057-24923281 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 159, 62 |
| Conread position: | 320-696 |
| Cow position: | chrX:38935622-38935998 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 92, 51 |
| Conread position: | 322-609 |
| Cow position: | chrX:33767228-33767503 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 57 |
Show alignments to all cow chromosomes.