Cow genome map
| Conread name: | Thy1-THY010098B08 |
| Conread position: | 2-572 |
| Cow position: | chr11:18694529-18693965 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 362 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 69-770 |
| Cow position: | chr11:18436859-18437568 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 94-697 |
| Cow position: | chr11:38599226-38599858 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 399 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 49, 195 |
| Conread position: | 102-568 |
| Cow position: | chr11:17867428-17866942 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 166 |
| Conread position: | 105-697 |
| Cow position: | chr11:35569754-35570356 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 228 |
| Conread position: | 114-700 |
| Cow position: | chr11:17453523-17452919 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 385 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 118, 40 |
| Conread position: | 119-455 |
| Cow position: | chr11:83323113-83322783 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 75, 67 |
| Conread position: | 119-710 |
| Cow position: | chr11:53307448-53308054 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 383 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 112, 55 |
| Conread position: | 123-716 |
| Cow position: | chr11:30777420-30776800 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 393 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 108, 164 |
| Conread position: | 126-580 |
| Cow position: | chr11:57619573-57619107 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 295 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 91, 39 |
| Conread position: | 126-816 |
| Cow position: | chr11:28699637-28700306 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 133 |
| Conread position: | 127-646 |
| Cow position: | chr11:54676256-54675732 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 102, 84 |
| Conread position: | 127-654 |
| Cow position: | chr11:35232255-35231727 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 356 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 152, 36 |
| Conread position: | 127-697 |
| Cow position: | chr11:3238755-3238157 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 372 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr11:8367013-8366416 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 380 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 104, 196 |
| Conread position: | 127-697 |
| Cow position: | chr11:10698296-10698890 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 379 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 127-697 |
| Cow position: | chr11:16547497-16548094 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 380 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr11:20730770-20731366 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 384 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr11:24333540-24334137 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 381 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr11:26592325-26592921 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 151, 159 |
| Conread position: | 127-697 |
| Cow position: | chr11:30700935-30700350 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 372 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 86 |
| Conread position: | 127-697 |
| Cow position: | chr11:41260476-41261072 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 381 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr11:41314748-41314152 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr11:43361286-43361863 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 353 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 104, 191 |
| Conread position: | 127-697 |
| Cow position: | chr11:52846928-52846330 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 380 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr11:54302990-54302393 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 381 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr11:66389562-66390151 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 376 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-700 |
| Cow position: | chr11:58790424-58789853 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 373 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 127-701 |
| Cow position: | chr11:63390029-63390627 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-716 |
| Cow position: | chr11:72369504-72368890 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 372 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-816 |
| Cow position: | chr11:64477725-64478430 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 196 |
| Conread position: | 128-697 |
| Cow position: | chr11:8443539-8444131 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 378 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 103, 197 |
| Conread position: | 128-897 |
| Cow position: | chr11:5260727-5261522 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 148 |
| Conread position: | 131-686 |
| Cow position: | chr11:53855978-53855404 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 367 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 133-516 |
| Cow position: | chr11:18922028-18922427 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 98, 55 |
| Conread position: | 135-708 |
| Cow position: | chr11:77436952-77436375 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 379 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 141-552 |
| Cow position: | chr11:28382099-28381680 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 141-554 |
| Cow position: | chr11:76603343-76602905 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 118, 185 |
| Conread position: | 141-697 |
| Cow position: | chr11:26444236-26444793 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 72 |
| Conread position: | 141-912 |
| Cow position: | chr11:12178527-12177733 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 500 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 90, 146 |
| Conread position: | 141-921 |
| Cow position: | chr11:31905183-31904408 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 118 |
| Conread position: | 142-560 |
| Cow position: | chr11:69402785-69403225 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 114 |
| Conread position: | 144-552 |
| Cow position: | chr11:13534134-13534569 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 14, 6 |
| Conread position: | 146-708 |
| Cow position: | chr11:13992968-13992385 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 382 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 162-511 |
| Cow position: | chr11:60543651-60543283 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 165-551 |
| Cow position: | chr11:49550612-49551007 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 134 |
| Conread position: | 167-576 |
| Cow position: | chr11:18544775-18545200 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 167-576 |
| Cow position: | chr11:18562854-18563278 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 170-472 |
| Cow position: | chr11:77252993-77253302 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 170-697 |
| Cow position: | chr11:34609316-34608793 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 361 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 89 |
| Conread position: | 174-916 |
| Cow position: | chr11:29311507-29312227 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 493 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 175-551 |
| Cow position: | chr11:77764570-77764955 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 176-771 |
| Cow position: | chr11:46032351-46032964 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 399 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 107, 44 |
| Conread position: | 183-573 |
| Cow position: | chr11:71034091-71034503 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 187-685 |
| Cow position: | chr11:57543522-57543017 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 331 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 195-686 |
| Cow position: | chr11:44529432-44528931 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 333 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 210-418 |
| Cow position: | chr11:56419163-56419383 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 90 |
| Conread position: | 213-699 |
| Cow position: | chr11:40350699-40351202 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 317 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 214-416 |
| Cow position: | chr11:49982506-49982293 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 215-890 |
| Cow position: | chr11:46027796-46027129 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 229-495 |
| Cow position: | chr11:45839545-45839825 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 229-716 |
| Cow position: | chr11:40502132-40502630 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 342 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 230-695 |
| Cow position: | chr11:83092320-83092809 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 236-552 |
| Cow position: | chr11:1832890-1833231 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 238-688 |
| Cow position: | chr11:18756174-18755712 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 238-717 |
| Cow position: | chr11:65682501-65682023 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 239-915 |
| Cow position: | chr11:96277-96951 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 457 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 240-547 |
| Cow position: | chr11:43075707-43075397 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 242-624 |
| Cow position: | chr11:79484817-79485213 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 245-697 |
| Cow position: | chr11:57624853-57625333 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 302 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 258-685 |
| Cow position: | chr11:68664316-68663875 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 64 |
| Conread position: | 266-921 |
| Cow position: | chr11:19060760-19061437 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 433 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 347-905 |
| Cow position: | chr11:15691938-15692483 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 376 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 33, 190 |
| Conread position: | 354-692 |
| Cow position: | chr11:13861477-13861822 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 377-890 |
| Cow position: | chr11:35383864-35384381 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 346 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 10, 163 |
| Conread position: | 382-582 |
| Cow position: | chr11:37945571-37945363 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 387-708 |
| Cow position: | chr11:67254137-67253810 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 64, 127 |
| Conread position: | 402-646 |
| Cow position: | chr11:76405863-76405616 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 39, 127 |
| Conread position: | 430-900 |
| Cow position: | chr11:10307941-10307477 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 465-902 |
| Cow position: | chr11:19428243-19428691 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 470-686 |
| Cow position: | chr11:45852874-45853098 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 131 |
| Conread position: | 493-712 |
| Cow position: | chr11:2083874-2083649 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 128, 6 |
| Conread position: | 497-920 |
| Cow position: | chr11:16655015-16655441 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 82, 105 |
| Conread position: | 502-718 |
| Cow position: | chr11:19088747-19088534 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 154, 87 |
Show alignments to all cow chromosomes.