Cow genome map
| Conread name: | Thy1-THY010098B08 |
| Conread position: | 123-697 |
| Cow position: | chr16:18212137-18212738 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 382 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 108, 164 |
| Conread position: | 123-890 |
| Cow position: | chr16:15349108-15349869 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 494 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 108, 83 |
| Conread position: | 127-557 |
| Cow position: | chr16:23892279-23892715 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 127-571 |
| Cow position: | chr16:24625021-24625466 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 104, 195 |
| Conread position: | 127-697 |
| Cow position: | chr16:10372382-10372977 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr16:18650530-18651125 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr16:19082100-19081509 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 374 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 15 |
| Conread position: | 127-697 |
| Cow position: | chr16:28468069-28468666 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 384 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr16:49779896-49780493 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 380 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-715 |
| Cow position: | chr16:34019042-34019660 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 32 |
| Conread position: | 127-716 |
| Cow position: | chr16:25075647-25075031 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 389 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-783 |
| Cow position: | chr16:31619134-31619790 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 142 |
| Conread position: | 127-862 |
| Cow position: | chr16:38518150-38518884 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 40 |
| Conread position: | 127-912 |
| Cow position: | chr16:15312335-15311530 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 513 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-921 |
| Cow position: | chr16:18975922-18975107 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 514 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 128-580 |
| Cow position: | chr16:8668302-8667842 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 111, 68 |
| Conread position: | 131-697 |
| Cow position: | chr16:26500680-26500120 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 133-554 |
| Cow position: | chr16:47773303-47772871 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 99, 76 |
| Conread position: | 134-519 |
| Cow position: | chr16:44569572-44569967 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 126 |
| Conread position: | 135-716 |
| Cow position: | chr16:52892597-52892004 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 189 |
| Conread position: | 141-504 |
| Cow position: | chr16:43813588-43813213 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 141-697 |
| Cow position: | chr16:4722518-4721941 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 367 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 90, 146 |
| Conread position: | 141-701 |
| Cow position: | chr16:5666138-5665554 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 374 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 90, 71 |
| Conread position: | 141-711 |
| Cow position: | chr16:51381554-51382110 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 68 |
| Conread position: | 144-654 |
| Cow position: | chr16:22387818-22388330 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 338 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 87, 183 |
| Conread position: | 145-679 |
| Cow position: | chr16:16286044-16285500 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 346 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 134, 55 |
| Conread position: | 146-491 |
| Cow position: | chr16:24554097-24554457 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 84, 72 |
| Conread position: | 158-489 |
| Cow position: | chr16:52165404-52165751 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 162-692 |
| Cow position: | chr16:17015182-17014653 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 170-551 |
| Cow position: | chr16:53214549-53214160 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 62, 154 |
| Conread position: | 175-545 |
| Cow position: | chr16:9417862-9417477 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 56, 107 |
| Conread position: | 175-697 |
| Cow position: | chr16:41163772-41164314 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 356 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 221-646 |
| Cow position: | chr16:36653289-36652858 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 175 |
| Conread position: | 222-552 |
| Cow position: | chr16:26423072-26423410 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 229-697 |
| Cow position: | chr16:49742578-49743066 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 235-687 |
| Cow position: | chr16:26682589-26682124 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 42, 89 |
| Conread position: | 238-691 |
| Cow position: | chr16:44704555-44704083 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 310 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 239-711 |
| Cow position: | chr16:17125314-17124819 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 320 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 240-578 |
| Cow position: | chr16:29864394-29864748 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 95, 79 |
| Conread position: | 241-717 |
| Cow position: | chr16:45801665-45801187 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 242-694 |
| Cow position: | chr16:54214327-54213860 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 103 |
| Conread position: | 249-524 |
| Cow position: | chr16:34633775-34634059 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 250-769 |
| Cow position: | chr16:42053294-42053813 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 287-910 |
| Cow position: | chr16:26990049-26990691 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 408 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 288-827 |
| Cow position: | chr16:9590585-9590040 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 351 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 352-626 |
| Cow position: | chr16:11925069-11925359 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 10 |
| Conread position: | 352-697 |
| Cow position: | chr16:54651534-54651891 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 353-555 |
| Cow position: | chr16:52610007-52609802 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 377-921 |
| Cow position: | chr16:28372995-28373542 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 72, 168 |
| Conread position: | 379-795 |
| Cow position: | chr16:19725564-19725152 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 162 |
| Conread position: | 391-699 |
| Cow position: | chr16:54086692-54086379 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 409-693 |
| Cow position: | chr16:54699792-54699500 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 463-903 |
| Cow position: | chr16:8805056-8804601 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 41 |
Show alignments to all cow chromosomes.