Cow genome map
| Conread name: | Thy1-THY010098B08 |
| Conread position: | 89-551 |
| Cow position: | chr2:56076638-56076175 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 315 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 89-921 |
| Cow position: | chr2:44439685-44440515 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 672 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 457 |
| Conread position: | 99-442 |
| Cow position: | chr2:5722846-5723193 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 135, 68 |
| Conread position: | 102-709 |
| Cow position: | chr2:76811639-76811009 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 122-697 |
| Cow position: | chr2:3623814-3623211 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 378 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 109, 165 |
| Conread position: | 122-912 |
| Cow position: | chr2:31407053-31407865 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 515 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 109, 165 |
| Conread position: | 126-623 |
| Cow position: | chr2:38832136-38832632 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 105, 64 |
| Conread position: | 127-455 |
| Cow position: | chr2:2530149-2530495 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 104, 134 |
| Conread position: | 127-457 |
| Cow position: | chr2:86003428-86003090 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 213 |
| Conread position: | 127-546 |
| Cow position: | chr2:29757130-29757550 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 104, 84 |
| Conread position: | 127-554 |
| Cow position: | chr2:64221905-64222349 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 135 |
| Conread position: | 127-697 |
| Cow position: | chr2:4833032-4833628 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 373 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr2:17118792-17119388 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 379 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 127-697 |
| Cow position: | chr2:42667420-42668016 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 374 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 87, 129 |
| Conread position: | 127-697 |
| Cow position: | chr2:49630610-49630016 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 379 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 105, 160 |
| Conread position: | 127-697 |
| Cow position: | chr2:53203838-53204437 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 382 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr2:57339229-57338645 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 359 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 106, 160 |
| Conread position: | 127-697 |
| Cow position: | chr2:62731811-62731216 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 386 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 105, 160 |
| Conread position: | 127-697 |
| Cow position: | chr2:62819195-62819789 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 372 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 105, 82 |
| Conread position: | 127-697 |
| Cow position: | chr2:63706860-63707460 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 385 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 163 |
| Conread position: | 127-701 |
| Cow position: | chr2:63889959-63890550 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 376 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 104, 145 |
| Conread position: | 127-702 |
| Cow position: | chr2:11705916-11705328 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 378 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 104, 68 |
| Conread position: | 127-704 |
| Cow position: | chr2:29188208-29188798 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 390 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 86, 103 |
| Conread position: | 127-718 |
| Cow position: | chr2:9911553-9910948 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 379 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 152, 104 |
| Conread position: | 127-843 |
| Cow position: | chr2:54055492-54054765 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 127-912 |
| Cow position: | chr2:44094651-44093847 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 510 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-914 |
| Cow position: | chr2:11813262-11814072 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 510 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-921 |
| Cow position: | chr2:8529958-8529157 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 512 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-921 |
| Cow position: | chr2:10608509-10609317 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 517 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 128-465 |
| Cow position: | chr2:45251083-45251418 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 93, 117 |
| Conread position: | 128-564 |
| Cow position: | chr2:77467930-77468367 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 128-699 |
| Cow position: | chr2:47181462-47182062 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 376 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 159 |
| Conread position: | 128-921 |
| Cow position: | chr2:54424834-54425658 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 528 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 58, 109 |
| Conread position: | 131-618 |
| Cow position: | chr2:26113498-26114006 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 340 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 80, 168 |
| Conread position: | 131-697 |
| Cow position: | chr2:32659713-32659138 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 365 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 100, 187 |
| Conread position: | 134-411 |
| Cow position: | chr2:20367238-20367520 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 91, 170 |
| Conread position: | 136-482 |
| Cow position: | chr2:18152426-18152777 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 99, 125 |
| Conread position: | 141-421 |
| Cow position: | chr2:56114508-56114215 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 183 |
| Conread position: | 141-557 |
| Cow position: | chr2:3183207-3182804 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 54 |
| Conread position: | 141-697 |
| Cow position: | chr2:29955812-29956380 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 363 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 92, 182 |
| Conread position: | 146-818 |
| Cow position: | chr2:56869879-56870564 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 176 |
| Conread position: | 159-494 |
| Cow position: | chr2:23526680-23527026 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 163 |
| Conread position: | 160-556 |
| Cow position: | chr2:56705046-56705449 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 162-517 |
| Cow position: | chr2:35705666-35706031 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 173, 42 |
| Conread position: | 170-552 |
| Cow position: | chr2:10677455-10677849 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 170-554 |
| Cow position: | chr2:15568849-15569246 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 142 |
| Conread position: | 192-618 |
| Cow position: | chr2:59441746-59441317 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 47, 101 |
| Conread position: | 219-581 |
| Cow position: | chr2:63873555-63873930 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 229-452 |
| Cow position: | chr2:14435283-14435052 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 234-714 |
| Cow position: | chr2:50055815-50055317 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 238-870 |
| Cow position: | chr2:26067644-26068287 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 429 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 36, 86 |
| Conread position: | 244-465 |
| Cow position: | chr2:24432792-24432568 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 248-825 |
| Cow position: | chr2:434246-433643 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 250-720 |
| Cow position: | chr2:272915-272450 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 161, 33 |
| Conread position: | 253-715 |
| Cow position: | chr2:76815509-76815050 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 263-690 |
| Cow position: | chr2:26154918-26155347 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 278-817 |
| Cow position: | chr2:14092962-14092402 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 376 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 280-715 |
| Cow position: | chr2:77066435-77065985 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 298-843 |
| Cow position: | chr2:84757975-84757417 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 374 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 347-654 |
| Cow position: | chr2:75792395-75792710 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 201 |
| Conread position: | 376-702 |
| Cow position: | chr2:43628000-43628336 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 120 |
| Conread position: | 377-816 |
| Cow position: | chr2:79243168-79243602 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 89, 74 |
| Conread position: | 378-678 |
| Cow position: | chr2:75793003-75793311 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 83, 170 |
| Conread position: | 379-626 |
| Cow position: | chr2:59695934-59695689 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 204, 34 |
| Conread position: | 385-915 |
| Cow position: | chr2:28467394-28467918 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 172 |
| Conread position: | 408-833 |
| Cow position: | chr2:5990587-5991003 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 171 |
| Conread position: | 474-870 |
| Cow position: | chr2:58534441-58534059 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 537-921 |
| Cow position: | chr2:69141980-69141603 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 12 |
Show alignments to all cow chromosomes.