Cow genome map
| Conread name: | Thy1-THY010098B08 |
| Conread position: | 72-554 |
| Cow position: | chr4:43855566-43856069 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 335 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 119-524 |
| Cow position: | chr4:6630830-6631251 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 105, 22 |
| Conread position: | 122-697 |
| Cow position: | chr4:18335469-18336074 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 375 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 109, 165 |
| Conread position: | 124-697 |
| Cow position: | chr4:2226290-2226887 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 375 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 107, 51 |
| Conread position: | 127-416 |
| Cow position: | chr4:19227267-19226957 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 96, 209 |
| Conread position: | 127-551 |
| Cow position: | chr4:54931155-54931584 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 85, 197 |
| Conread position: | 127-697 |
| Cow position: | chr4:1927162-1927759 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 375 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 104, 196 |
| Conread position: | 127-697 |
| Cow position: | chr4:9041420-9040822 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 376 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 98, 161 |
| Conread position: | 127-697 |
| Cow position: | chr4:15618167-15617570 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr4:20656593-20657185 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 376 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 127-698 |
| Cow position: | chr4:49907525-49906922 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 395 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 84, 209 |
| Conread position: | 127-716 |
| Cow position: | chr4:17235492-17234878 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 389 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-716 |
| Cow position: | chr4:60856233-60855617 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 392 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 103, 160 |
| Conread position: | 127-784 |
| Cow position: | chr4:17583233-17583914 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 127-847 |
| Cow position: | chr4:47116309-47115573 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 463 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-914 |
| Cow position: | chr4:44380127-44380923 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 127-920 |
| Cow position: | chr4:27872774-27873552 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 511 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 128-688 |
| Cow position: | chr4:34224879-34224298 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 387 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 128-921 |
| Cow position: | chr4:17033029-17033844 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 519 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 103, 159 |
| Conread position: | 129-652 |
| Cow position: | chr4:49828685-49828154 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 133-841 |
| Cow position: | chr4:47798555-47797842 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 460 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 109, 68 |
| Conread position: | 135-455 |
| Cow position: | chr4:20615174-20615499 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 104, 118 |
| Conread position: | 141-477 |
| Cow position: | chr4:23888743-23889093 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 141-545 |
| Cow position: | chr4:39510716-39511128 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 141-545 |
| Cow position: | chr4:49885838-49886256 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 90, 49 |
| Conread position: | 141-912 |
| Cow position: | chr4:41962355-41961563 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 500 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 90, 146 |
| Conread position: | 144-697 |
| Cow position: | chr4:4419502-4418922 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 363 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 87, 141 |
| Conread position: | 146-644 |
| Cow position: | chr4:23380571-23381098 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 89, 56 |
| Conread position: | 146-700 |
| Cow position: | chr4:43884544-43883966 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 367 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 87, 63 |
| Conread position: | 153-608 |
| Cow position: | chr4:22853040-22852582 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 306 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 156-566 |
| Cow position: | chr4:1309604-1309179 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 167 |
| Conread position: | 170-600 |
| Cow position: | chr4:23544975-23544519 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 16 |
| Conread position: | 175-697 |
| Cow position: | chr4:67394633-67394103 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 112 |
| Conread position: | 176-699 |
| Cow position: | chr4:2598983-2599535 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 362 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 7, 162 |
| Conread position: | 178-452 |
| Cow position: | chr4:43227095-43226807 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 92 |
| Conread position: | 182-716 |
| Cow position: | chr4:26625185-26625745 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 143 |
| Conread position: | 187-521 |
| Cow position: | chr4:476347-476693 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 6, 156 |
| Conread position: | 213-520 |
| Cow position: | chr4:43045755-43046066 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 19, 110 |
| Conread position: | 213-697 |
| Cow position: | chr4:33171543-33171032 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 213-702 |
| Cow position: | chr4:42638921-42639421 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 230-697 |
| Cow position: | chr4:63975520-63975994 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 237-552 |
| Cow position: | chr4:18185323-18184997 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 247-625 |
| Cow position: | chr4:1303245-1302881 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 251-716 |
| Cow position: | chr4:48543539-48544028 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 71 |
| Conread position: | 257-626 |
| Cow position: | chr4:8368885-8369268 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 259-685 |
| Cow position: | chr4:47079075-47079515 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 261-703 |
| Cow position: | chr4:67648726-67649187 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 291-664 |
| Cow position: | chr4:50604461-50604090 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 330-686 |
| Cow position: | chr4:34706074-34705705 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 122 |
| Conread position: | 354-790 |
| Cow position: | chr4:37947714-37948145 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 23 |
| Conread position: | 377-792 |
| Cow position: | chr4:45009386-45009807 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 89, 181 |
| Conread position: | 378-691 |
| Cow position: | chr4:46044111-46044438 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 491-921 |
| Cow position: | chr4:43001373-43001799 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 92, 16 |
Show alignments to all cow chromosomes.