Cow genome map
| Conread name: | Thy1-THY010098B08 |
| Conread position: | 11-823 |
| Cow position: | chr5:69859071-69858255 (view UCSC Genome Browser custom track) |
| Alignm length: | 848 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 34-623 |
| Cow position: | chr5:4350505-4351111 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 387 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 89-421 |
| Cow position: | chr5:49909549-49909222 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 142, 42 |
| Conread position: | 119-697 |
| Cow position: | chr5:15677637-15677037 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 381 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 112, 204 |
| Conread position: | 124-543 |
| Cow position: | chr5:21660681-21661102 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 155, 6 |
| Conread position: | 126-689 |
| Cow position: | chr5:54170339-54169770 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 15 |
| Conread position: | 127-552 |
| Cow position: | chr5:48225018-48225448 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 104, 75 |
| Conread position: | 127-574 |
| Cow position: | chr5:50990895-50990417 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 132, 118 |
| Conread position: | 127-611 |
| Cow position: | chr5:54038757-54038240 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 334 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 83, 199 |
| Conread position: | 127-697 |
| Cow position: | chr5:4015299-4015896 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 379 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr5:4962814-4963404 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 378 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr5:11631412-11632009 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 375 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr5:18557845-18558428 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 376 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr5:31709864-31709276 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 368 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr5:36369419-36370016 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 382 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 114 |
| Conread position: | 127-697 |
| Cow position: | chr5:45179276-45179870 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 379 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 104, 117 |
| Conread position: | 127-697 |
| Cow position: | chr5:49220924-49221517 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 376 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 91, 197 |
| Conread position: | 127-697 |
| Cow position: | chr5:51165738-51166333 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 372 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 127-697 |
| Cow position: | chr5:53075297-53075894 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 380 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-699 |
| Cow position: | chr5:1338351-1338947 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 381 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-716 |
| Cow position: | chr5:21220257-21220872 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 144 |
| Conread position: | 127-816 |
| Cow position: | chr5:52248183-52248894 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 127-912 |
| Cow position: | chr5:6455090-6455897 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 511 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-921 |
| Cow position: | chr5:6124590-6125405 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 517 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-921 |
| Cow position: | chr5:10542105-10542913 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 513 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 128-623 |
| Cow position: | chr5:69753048-69753574 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 348 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 95, 201 |
| Conread position: | 138-919 |
| Cow position: | chr5:41739202-41738437 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 141-554 |
| Cow position: | chr5:23647876-23648301 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 90, 183 |
| Conread position: | 141-574 |
| Cow position: | chr5:21119196-21118750 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 299 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 90, 183 |
| Conread position: | 141-697 |
| Cow position: | chr5:52822650-52823231 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 368 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 90, 145 |
| Conread position: | 141-697 |
| Cow position: | chr5:54927367-54927943 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 367 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 91, 78 |
| Conread position: | 141-697 |
| Cow position: | chr5:54929695-54930271 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 367 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 91, 78 |
| Conread position: | 145-572 |
| Cow position: | chr5:28037639-28037201 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 144 |
| Conread position: | 145-921 |
| Cow position: | chr5:2977342-2976543 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 515 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 149-441 |
| Cow position: | chr5:60519131-60519441 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 170-646 |
| Cow position: | chr5:70771664-70771182 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 311 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 172-921 |
| Cow position: | chr5:55832320-55833084 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 471 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 173-433 |
| Cow position: | chr5:69625375-69625111 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 58, 95 |
| Conread position: | 183-727 |
| Cow position: | chr5:39468405-39467841 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 369 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 7, 141 |
| Conread position: | 185-570 |
| Cow position: | chr5:52241027-52240624 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 198-550 |
| Cow position: | chr5:864129-863790 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 126 |
| Conread position: | 207-773 |
| Cow position: | chr5:67618792-67618195 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 211-520 |
| Cow position: | chr5:50189437-50189105 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 213-700 |
| Cow position: | chr5:34285004-34285503 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 220-687 |
| Cow position: | chr5:57791604-57792076 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 103 |
| Conread position: | 229-519 |
| Cow position: | chr5:40346638-40346941 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 106, 90 |
| Conread position: | 236-685 |
| Cow position: | chr5:53148819-53149281 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 238-870 |
| Cow position: | chr5:14186178-14186806 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 33 |
| Conread position: | 249-572 |
| Cow position: | chr5:36223698-36224030 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 254-697 |
| Cow position: | chr5:295706-295241 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 273-824 |
| Cow position: | chr5:72298858-72299407 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 365 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 279-702 |
| Cow position: | chr5:56657291-56657742 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 279-830 |
| Cow position: | chr5:60674582-60674053 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 365 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 279-921 |
| Cow position: | chr5:4437802-4437150 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 425 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 290-921 |
| Cow position: | chr5:10081169-10080523 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 430 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 338-914 |
| Cow position: | chr5:34961791-34962358 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 378 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 73 |
| Conread position: | 348-840 |
| Cow position: | chr5:40771881-40772379 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 331 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 6, 181 |
| Conread position: | 354-688 |
| Cow position: | chr5:68485729-68485388 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 23, 93 |
| Conread position: | 377-913 |
| Cow position: | chr5:15462137-15461606 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 344 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 77, 365 |
| Conread position: | 379-921 |
| Cow position: | chr5:51942957-51942413 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 350 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 80, 62 |
| Conread position: | 470-902 |
| Cow position: | chr5:14727901-14728342 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 82 |
| Conread position: | 475-916 |
| Cow position: | chr5:63074480-63074932 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 488-913 |
| Cow position: | chr5:56961748-56961328 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 277 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 82, 54 |
| Conread position: | 502-712 |
| Cow position: | chr5:68320016-68320231 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 620-920 |
| Cow position: | chr5:20430526-20430223 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 120 |
Show alignments to all cow chromosomes.