Cow genome map
| Conread name: | Thy1-THY010098B08 |
| Conread position: | 89-465 |
| Cow position: | chr9:19380083-19380476 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 30, 156 |
| Conread position: | 99-699 |
| Cow position: | chr9:49034613-49034005 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 416 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 127-427 |
| Cow position: | chr9:52912577-52912878 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 127-446 |
| Cow position: | chr9:48260251-48260570 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 127-552 |
| Cow position: | chr9:23837040-23836599 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 105, 79 |
| Conread position: | 127-654 |
| Cow position: | chr9:61519981-61519444 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 353 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 104, 98 |
| Conread position: | 127-697 |
| Cow position: | chr9:1070643-1071240 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 378 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr9:3052905-3052309 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 382 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-697 |
| Cow position: | chr9:28785982-28785388 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 371 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 75 |
| Conread position: | 127-697 |
| Cow position: | chr9:47045588-47044991 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 378 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-716 |
| Cow position: | chr9:34726586-34725981 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 384 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 127-717 |
| Cow position: | chr9:49343350-49342780 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 204 |
| Conread position: | 127-912 |
| Cow position: | chr9:17018395-17017588 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 505 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 127-921 |
| Cow position: | chr9:2857484-2856669 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 511 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 104, 116 |
| Conread position: | 128-494 |
| Cow position: | chr9:17296466-17296844 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 84, 197 |
| Conread position: | 128-658 |
| Cow position: | chr9:20413858-20413319 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 358 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 43, 84 |
| Conread position: | 128-697 |
| Cow position: | chr9:1838591-1837999 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 379 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 103, 159 |
| Conread position: | 128-697 |
| Cow position: | chr9:2495102-2495697 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 372 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 128-697 |
| Cow position: | chr9:6366012-6365421 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 379 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 103, 78 |
| Conread position: | 128-697 |
| Cow position: | chr9:30281382-30281972 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 387 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 103, 84 |
| Conread position: | 130-550 |
| Cow position: | chr9:9634295-9633855 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 103, 178 |
| Conread position: | 131-453 |
| Cow position: | chr9:52666895-52666562 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 100, 109 |
| Conread position: | 132-568 |
| Cow position: | chr9:21228850-21228402 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 134-702 |
| Cow position: | chr9:10111593-10111034 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 376 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 145, 93 |
| Conread position: | 134-702 |
| Cow position: | chr9:56165797-56166384 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 177 |
| Conread position: | 141-493 |
| Cow position: | chr9:34553627-34553983 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 118, 82 |
| Conread position: | 141-543 |
| Cow position: | chr9:8727964-8727548 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 90, 389 |
| Conread position: | 141-697 |
| Cow position: | chr9:18711119-18710537 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 369 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 90, 182 |
| Conread position: | 141-697 |
| Cow position: | chr9:28681827-28681244 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 369 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 90, 146 |
| Conread position: | 141-697 |
| Cow position: | chr9:42570842-42570258 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 377 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 92, 72 |
| Conread position: | 141-697 |
| Cow position: | chr9:47171680-47171096 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 372 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 90, 146 |
| Conread position: | 141-697 |
| Cow position: | chr9:48794669-48795248 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 373 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 141-698 |
| Cow position: | chr9:771622-772203 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 362 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 90, 182 |
| Conread position: | 141-870 |
| Cow position: | chr9:40131521-40130788 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 26 |
| Conread position: | 170-709 |
| Cow position: | chr9:23603720-23603163 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 215-715 |
| Cow position: | chr9:48796619-48797136 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 336 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 233-823 |
| Cow position: | chr9:40440126-40440711 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 400 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 102, 52 |
| Conread position: | 244-586 |
| Cow position: | chr9:51760648-51760299 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 250-525 |
| Cow position: | chr9:4912388-4912683 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 72 |
| Conread position: | 251-716 |
| Cow position: | chr9:14282823-14283298 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 330 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 99 |
| Conread position: | 279-921 |
| Cow position: | chr9:50062452-50063110 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 436 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 376-816 |
| Cow position: | chr9:27741653-27741217 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 162, 117 |
| Conread position: | 377-702 |
| Cow position: | chr9:19536662-19536999 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 51, 57 |
| Conread position: | 380-608 |
| Cow position: | chr9:33676636-33676396 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 171 |
Show alignments to all cow chromosomes.