Cow genome map

Conread name: Thy1-THY010098B08

Conread position: 95-824
Cow position: chrX:23587379-23586648 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 12

Conread position: 99-486
Cow position: chrX:2161389-2161025 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 254
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 29

Conread position: 125-581
Cow position: chrX:23514924-23515405 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 320
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 114, 46

Conread position: 126-654
Cow position: chrX:10409537-10410090 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 80

Conread position: 126-663
Cow position: chrX:29068559-29068042 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 62

Conread position: 127-555
Cow position: chrX:2790786-2790343 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 291
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 42, 71

Conread position: 127-612
Cow position: chrX:18769447-18768961 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 333
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 104, 22

Conread position: 127-697
Cow position: chrX:21686168-21685571 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 374
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 104, 160

Conread position: 127-697
Cow position: chrX:21768353-21767752 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 377
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 104, 160

Conread position: 127-697
Cow position: chrX:26531508-26530925 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 377
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 104, 150

Conread position: 127-697
Cow position: chrX:30159446-30160037 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 381
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 104, 160

Conread position: 127-697
Cow position: chrX:30836922-30836339 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 366
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 104, 160

Conread position: 127-697
Cow position: chrX:36535186-36535777 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 378
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 104, 160

Conread position: 127-912
Cow position: chrX:38230718-38231525 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 504
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 160

Conread position: 127-921
Cow position: chrX:7755450-7754639 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 512
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 104, 160

Conread position: 127-921
Cow position: chrX:11145788-11146602 (view UCSC Genome Browser custom track)
Alignm length: 836
Alignm identity: 511
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 104, 160

Conread position: 128-574
Cow position: chrX:19929977-19929516 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 312
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 103, 40

Conread position: 128-912
Cow position: chrX:30052921-30053726 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 506
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 150, 158

Conread position: 128-921
Cow position: chrX:15620984-15621798 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 511
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 103, 194

Conread position: 131-558
Cow position: chrX:14267661-14268103 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 305
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 65, 29

Conread position: 131-713
Cow position: chrX:3245606-3246219 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 195

Conread position: 131-870
Cow position: chrX:20869691-20870430 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 13

Conread position: 134-905
Cow position: chrX:6026169-6026948 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 90

Conread position: 135-646
Cow position: chrX:41106476-41106974 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 344
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 34, 74

Conread position: 141-455
Cow position: chrX:23521970-23522286 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 94, 43

Conread position: 141-476
Cow position: chrX:10438405-10438744 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 231
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 90, 32

Conread position: 141-485
Cow position: chrX:19589674-19590025 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 244
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 90, 63

Conread position: 141-689
Cow position: chrX:28080322-28079769 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 356
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 32, 64

Conread position: 141-697
Cow position: chrX:671474-672041 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 356
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 90, 45

Conread position: 141-697
Cow position: chrX:6454231-6453649 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 368
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 90, 108

Conread position: 141-697
Cow position: chrX:13405762-13406334 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 360
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 90, 110

Conread position: 141-697
Cow position: chrX:18656270-18656853 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 368
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 90, 146

Conread position: 141-697
Cow position: chrX:28503871-28503288 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 370
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 90, 146

Conread position: 141-772
Cow position: chrX:18247879-18247238 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 417
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 90, 34

Conread position: 145-890
Cow position: chrX:17609928-17610683 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 474
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 79, 30

Conread position: 151-816
Cow position: chrX:16279176-16278501 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 433
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 80, 68

Conread position: 152-697
Cow position: chrX:37403712-37404277 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 361
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 79, 135

Conread position: 162-684
Cow position: chrX:1430543-1430000 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 367
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 118, 56

Conread position: 164-581
Cow position: chrX:25359686-25359251 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 299
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 67, 53

Conread position: 167-545
Cow position: chrX:15340349-15340746 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 63

Conread position: 170-470
Cow position: chrX:2185745-2185440 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 205
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 63, 98

Conread position: 174-877
Cow position: chrX:37960104-37959415 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 36

Conread position: 175-915
Cow position: chrX:20652909-20652159 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 491
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 56, 104

Conread position: 176-490
Cow position: chrX:24923355-24923024 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 226
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 35, 150

Conread position: 179-558
Cow position: chrX:17097775-17098186 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 284
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 46, 121

Conread position: 183-477
Cow position: chrX:13885463-13885165 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 201
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 52, 107

Conread position: 207-633
Cow position: chrX:3425132-3425575 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 296
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 18, 78

Conread position: 213-501
Cow position: chrX:40707931-40707630 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 108

Conread position: 213-626
Cow position: chrX:38569942-38569514 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 108

Conread position: 238-686
Cow position: chrX:19650075-19650527 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 294
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 16

Conread position: 242-910
Cow position: chrX:9156621-9155969 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 107

Conread position: 250-555
Cow position: chrX:27385510-27385819 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 28, 21

Conread position: 262-691
Cow position: chrX:28666540-28666995 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 300
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 73, 57

Conread position: 278-705
Cow position: chrX:44428359-44428797 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 287
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 56, 30

Conread position: 279-625
Cow position: chrX:23032856-23032500 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 233
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 98, 27

Conread position: 288-520
Cow position: chrX:36376958-36376724 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 47, 33

Conread position: 346-526
Cow position: chrX:3627808-3627618 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 375-708
Cow position: chrX:5882101-5881778 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 232
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 86, 51

Conread position: 377-686
Cow position: chrX:23416009-23416321 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 221
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 146

Conread position: 378-715
Cow position: chrX:17606490-17606825 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 237
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 9, 260

Conread position: 388-625
Cow position: chrX:5934226-5933982 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 172
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 71, 126

Conread position: 392-850
Cow position: chrX:24528581-24528126 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 112

Conread position: 425-714
Cow position: chrX:1047810-1047517 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 216
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 36, 129

Conread position: 430-716
Cow position: chrX:39565967-39566257 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 26, 58

Conread position: 474-692
Cow position: chrX:27117053-27117280 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 18, 152

Conread position: 476-863
Cow position: chrX:19171326-19171692 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 263
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 62

Conread position: 579-921
Cow position: chrX:27386053-27386405 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 237
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 6, 42

Show alignments to all cow chromosomes.