Cow genome map

Conread name: Thy1-THY010102A12

Conread position: 1-115
Cow position: chr11:63659781-63659663 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 1-119
Cow position: chr11:44860729-44860607 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 94, 0

Conread position: 1-140
Cow position: chr11:9734847-9734705 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 94, 63

Conread position: 1-146
Cow position: chr11:12358625-12358476 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 95, 0

Conread position: 1-146
Cow position: chr11:19102686-19102537 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 1-146
Cow position: chr11:77235515-77235664 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 122
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 1-154
Cow position: chr11:28054800-28054643 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 94, 0

Conread position: 1-154
Cow position: chr11:37093261-37093105 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 94, 124

Conread position: 1-155
Cow position: chr11:29668828-29668673 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 68

Conread position: 1-159
Cow position: chr11:1496274-1496112 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 137
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr11:4027763-4027601 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 95, 0

Conread position: 1-159
Cow position: chr11:10847245-10847404 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 97, 47

Conread position: 1-159
Cow position: chr11:11987908-11988069 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 89, 0

Conread position: 1-159
Cow position: chr11:24393117-24393279 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr11:26125131-26124969 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr11:37477319-37477157 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 93, 0

Conread position: 1-159
Cow position: chr11:38505804-38505643 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 94, 34

Conread position: 1-159
Cow position: chr11:38835621-38835469 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 1-159
Cow position: chr11:41170892-41170730 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr11:43514830-43514668 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 44, 56

Conread position: 1-159
Cow position: chr11:52419188-52419350 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr11:57628246-57628084 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr11:71329444-71329606 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr11:72110165-72110003 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr11:85394011-85393849 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr11:12093357-12093533 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr11:20920945-20920770 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr11:36744380-36744205 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr11:61401251-61401076 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 141
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr11:64045798-64045973 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr11:73477108-73477283 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chr11:8887356-8887182 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 140
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 94, 25

Conread position: 1-173
Cow position: chr11:21466877-21467053 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 89, 0

Conread position: 1-173
Cow position: chr11:37065321-37065142 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 93, 0

Conread position: 1-173
Cow position: chr11:37491841-37491670 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 96, 16

Conread position: 1-173
Cow position: chr11:75920213-75920378 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 1-174
Cow position: chr11:3492811-3492992 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chr11:8519793-8519966 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 95, 53

Conread position: 1-174
Cow position: chr11:19064449-19064268 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chr11:25527360-25527537 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 147
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 95, 13

Conread position: 1-174
Cow position: chr11:28229953-28229776 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 94, 157

Conread position: 1-174
Cow position: chr11:33194753-33194572 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chr11:67846771-67846590 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-187
Cow position: chr11:9606777-9606585 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 84, 42

Conread position: 1-193
Cow position: chr11:34020688-34020887 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 15, 0

Conread position: 1-193
Cow position: chr11:40776742-40776548 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 94, 138

Conread position: 1-193
Cow position: chr11:45111167-45111366 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 158
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 26, 0

Conread position: 1-195
Cow position: chr11:12351265-12351064 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 162
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 94, 0

Conread position: 1-211
Cow position: chr11:15983424-15983642 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 94, 203

Conread position: 1-211
Cow position: chr11:67450299-67450516 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 94, 15

Conread position: 1-214
Cow position: chr11:17220419-17220198 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 14, 0

Conread position: 1-226
Cow position: chr11:4065434-4065199 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 1-248
Cow position: chr11:17280494-17280254 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 103, 85

Conread position: 1-367
Cow position: chr11:8282876-8283242 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 283

Conread position: 1-444
Cow position: chr11:7316673-7317125 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 60

Conread position: 2-128
Cow position: chr11:30305032-30305160 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 96, 117

Conread position: 2-159
Cow position: chr11:53287654-53287494 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 93, 151

Conread position: 2-169
Cow position: chr11:8261902-8261732 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 95, 129

Conread position: 2-169
Cow position: chr11:28063482-28063648 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 96, 36

Conread position: 2-173
Cow position: chr11:31925969-31926147 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 50, 39

Conread position: 2-240
Cow position: chr11:42429135-42429379 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 93, 20

Conread position: 2-241
Cow position: chr11:87127642-87127886 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 96, 37

Conread position: 2-594
Cow position: chr11:10090134-10090744 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 482

Conread position: 3-157
Cow position: chr11:4041270-4041116 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 92, 15

Conread position: 3-159
Cow position: chr11:5343415-5343255 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 133
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 92, 0

Conread position: 3-159
Cow position: chr11:17107884-17107724 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 130
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 92, 0

Conread position: 3-159
Cow position: chr11:23877105-23877264 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 92, 28

Conread position: 3-222
Cow position: chr11:32450669-32450903 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 92, 0

Conread position: 5-169
Cow position: chr11:9220316-9220147 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 90, 0

Conread position: 9-173
Cow position: chr11:8244515-8244680 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 89, 35

Conread position: 20-173
Cow position: chr11:9659568-9659411 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 130
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 75, 0

Conread position: 30-167
Cow position: chr11:76374371-76374231 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 91

Conread position: 38-153
Cow position: chr11:53432229-53432110 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 78-247
Cow position: chr11:10050589-10050763 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 149-562
Cow position: chr11:7113840-7114239 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 14

Conread position: 260-594
Cow position: chr11:87128524-87128852 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 228
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 35, 55

Conread position: 294-587
Cow position: chr11:28049433-28049141 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 201
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 62

Conread position: 330-563
Cow position: chr11:8261735-8261509 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 191, 27

Conread position: 330-585
Cow position: chr11:9220152-9219899 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 35, 126

Conread position: 330-591
Cow position: chr11:28063645-28063906 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 95

Conread position: 356-568
Cow position: chr11:59369650-59369858 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 116, 0

Conread position: 358-568
Cow position: chr11:8283291-8283503 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 116

Conread position: 367-594
Cow position: chr11:30124579-30124352 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 146, 39

Conread position: 373-594
Cow position: chr11:52886197-52885980 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 152, 56

Conread position: 387-561
Cow position: chr11:42429873-42430050 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 78, 42

Conread position: 400-584
Cow position: chr11:29233392-29233205 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 128, 74

Show alignments to all cow chromosomes.