Cow genome map

Conread name: Thy1-THY010102A12

Conread position: 1-146
Cow position: chr14:13479992-13479843 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 94, 0

Conread position: 1-146
Cow position: chr14:19328526-19328377 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 94, 0

Conread position: 1-153
Cow position: chr14:17685138-17685295 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-155
Cow position: chr14:22031945-22031787 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr14:750312-750474 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr14:2284081-2284243 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr14:5528804-5528966 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr14:7472116-7472272 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 94, 123

Conread position: 1-159
Cow position: chr14:9045308-9045470 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 93, 0

Conread position: 1-159
Cow position: chr14:11154423-11154262 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 94, 79

Conread position: 1-159
Cow position: chr14:12743326-12743164 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr14:13778697-13778859 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr14:13864341-13864178 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 1-159
Cow position: chr14:20782198-20782360 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 18

Conread position: 1-159
Cow position: chr14:44287508-44287346 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr14:45029381-45029220 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 94, 124

Conread position: 1-159
Cow position: chr14:45672302-45672141 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 97, 57

Conread position: 1-166
Cow position: chr14:13621406-13621235 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 1-167
Cow position: chr14:44422296-44422466 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 139
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 94, 0

Conread position: 1-170
Cow position: chr14:45850964-45851137 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 138
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr14:16273553-16273380 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 162

Conread position: 1-172
Cow position: chr14:16919948-16919773 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr14:17001312-17001142 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 97, 72

Conread position: 1-172
Cow position: chr14:23901058-23900883 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chr14:5201339-5201163 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 89, 0

Conread position: 1-173
Cow position: chr14:7830798-7830622 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 143
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chr14:13660246-13660068 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 94, 51

Conread position: 1-173
Cow position: chr14:22242623-22242799 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chr14:30596642-30596466 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 1-173
Cow position: chr14:36967997-36968173 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 140
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chr14:37223644-37223819 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 93, 0

Conread position: 1-173
Cow position: chr14:41085040-41084861 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 146
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 94, 25

Conread position: 1-173
Cow position: chr14:45767744-45767920 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chr14:45771035-45770861 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 143
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 97, 71

Conread position: 1-173
Cow position: chr14:47624302-47624471 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chr14:17491714-17491533 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chr14:29048161-29047980 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 145
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 95, 0

Conread position: 1-174
Cow position: chr14:44855684-44855508 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 97, 28

Conread position: 1-174
Cow position: chr14:50134812-50134994 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 1-180
Cow position: chr14:28994112-28993929 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 1-187
Cow position: chr14:13302772-13302960 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 89, 63

Conread position: 1-188
Cow position: chr14:46464815-46465007 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 96, 0

Conread position: 1-193
Cow position: chr14:19619962-19620164 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 1-193
Cow position: chr14:45160839-45161035 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 1-194
Cow position: chr14:44685785-44685988 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 97, 0

Conread position: 1-205
Cow position: chr14:30585209-30584998 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 94, 148

Conread position: 1-208
Cow position: chr14:45833896-45834109 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-211
Cow position: chr14:23257101-23257319 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 93, 203

Conread position: 1-231
Cow position: chr14:44377171-44377412 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 17, 199

Conread position: 1-238
Cow position: chr14:33394034-33393793 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 189
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 94, 206

Conread position: 1-242
Cow position: chr14:44551624-44551871 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 223

Conread position: 1-253
Cow position: chr14:37414144-37413897 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 94, 78

Conread position: 1-262
Cow position: chr14:12608924-12609189 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 117, 213

Conread position: 1-262
Cow position: chr14:22019135-22019398 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 111

Conread position: 1-267
Cow position: chr14:33675553-33675826 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 1-299
Cow position: chr14:41407564-41407862 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 211
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 17

Conread position: 1-382
Cow position: chr14:45303622-45303233 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 226

Conread position: 2-146
Cow position: chr14:5511565-5511713 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 93, 0

Conread position: 2-173
Cow position: chr14:45712243-45712073 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 140
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 143, 0

Conread position: 2-173
Cow position: chr14:50110309-50110484 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 88, 0

Conread position: 2-190
Cow position: chr14:47640884-47641071 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 25, 79

Conread position: 2-575
Cow position: chr14:40339426-40339990 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 44

Conread position: 2-589
Cow position: chr14:35387406-35386809 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 82

Conread position: 3-126
Cow position: chr14:48824327-48824454 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 3-167
Cow position: chr14:42152067-42152236 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 92, 0

Conread position: 3-169
Cow position: chr14:44130659-44130827 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 87, 69

Conread position: 3-173
Cow position: chr14:23690485-23690311 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 87, 0

Conread position: 3-173
Cow position: chr14:45565072-45565246 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 95, 0

Conread position: 3-191
Cow position: chr14:45205822-45206015 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 92, 83

Conread position: 3-193
Cow position: chr14:38532548-38532352 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 92, 0

Conread position: 3-196
Cow position: chr14:15276836-15276639 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 92, 0

Conread position: 3-201
Cow position: chr14:45917160-45917370 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 164
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 4-193
Cow position: chr14:44226142-44226335 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 95, 0

Conread position: 7-202
Cow position: chr14:40169955-40169760 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 158

Conread position: 8-250
Cow position: chr14:44580703-44580944 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 19, 8

Conread position: 38-243
Cow position: chr14:38146354-38146566 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 43-513
Cow position: chr14:46084401-46084874 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 96

Conread position: 46-159
Cow position: chr14:43557223-43557340 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 46-160
Cow position: chr14:45080833-45080950 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 241-578
Cow position: chr14:44377466-44377801 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 186

Conread position: 260-495
Cow position: chr14:33675909-33676137 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 102

Conread position: 260-542
Cow position: chr14:17764784-17764504 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 195

Conread position: 260-595
Cow position: chr14:38146669-38147007 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 227
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 25

Conread position: 289-557
Cow position: chr14:12609313-12609576 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 22, 29

Conread position: 316-569
Cow position: chr14:34775957-34776207 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 242, 158

Conread position: 343-586
Cow position: chr14:37457649-37457401 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 70, 133

Conread position: 358-597
Cow position: chr14:44257205-44256968 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 73, 26

Conread position: 359-535
Cow position: chr14:44676113-44676288 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 79, 90

Conread position: 366-594
Cow position: chr14:33341918-33342141 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 214, 9

Conread position: 377-568
Cow position: chr14:48824977-48825165 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 26, 34

Conread position: 385-594
Cow position: chr14:41408683-41408895 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 129, 48

Conread position: 387-578
Cow position: chr14:45303146-45302959 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 57, 91

Conread position: 417-582
Cow position: chr14:47922945-47923111 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 102, 16

Show alignments to all cow chromosomes.