Cow genome map
| Conread name: | Thy1-THY010102A12 |
| Conread position: | 1-146 |
| Cow position: | chr16:10437639-10437788 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-146 |
| Cow position: | chr16:40296782-40296633 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-152 |
| Cow position: | chr16:27734407-27734251 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-153 |
| Cow position: | chr16:5918879-5919035 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-155 |
| Cow position: | chr16:9777479-9777639 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-155 |
| Cow position: | chr16:15566146-15566298 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 1-158 |
| Cow position: | chr16:36361966-36361805 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 70, 17 |
| Conread position: | 1-159 |
| Cow position: | chr16:407638-407473 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:1568058-1567896 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:2239337-2239182 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 96 |
| Conread position: | 1-159 |
| Cow position: | chr16:5483719-5483881 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:8816708-8816546 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:10204034-10203872 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:15184199-15184361 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:23253111-23252949 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:25341361-25341523 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:25441014-25441182 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:25458075-25457907 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:26663144-26663307 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:28170966-28170805 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 1-159 |
| Cow position: | chr16:29046418-29046580 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:31832027-31832190 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-159 |
| Cow position: | chr16:43897871-43897713 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 1-166 |
| Cow position: | chr16:2411573-2411403 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-170 |
| Cow position: | chr16:51685833-51686004 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 92, 111 |
| Conread position: | 1-172 |
| Cow position: | chr16:53045750-53045925 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr16:2483747-2483570 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-173 |
| Cow position: | chr16:6549128-6548952 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-173 |
| Cow position: | chr16:7906015-7906191 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-173 |
| Cow position: | chr16:10808549-10808722 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 1-173 |
| Cow position: | chr16:14666433-14666257 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 94, 162 |
| Conread position: | 1-173 |
| Cow position: | chr16:15492104-15492281 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-173 |
| Cow position: | chr16:19713490-19713317 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 1-173 |
| Cow position: | chr16:23982707-23982882 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 94, 141 |
| Conread position: | 1-173 |
| Cow position: | chr16:25085017-25085193 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-195 |
| Cow position: | chr16:39821028-39821229 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 1-208 |
| Cow position: | chr16:25188039-25188252 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 97, 45 |
| Conread position: | 1-211 |
| Cow position: | chr16:5661246-5661464 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 93, 203 |
| Conread position: | 1-231 |
| Cow position: | chr16:18499953-18499722 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 34 |
| Conread position: | 1-246 |
| Cow position: | chr16:335686-335931 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 1-247 |
| Cow position: | chr16:31375884-31375634 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 1-287 |
| Cow position: | chr16:49257187-49256896 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 281 |
| Conread position: | 1-589 |
| Cow position: | chr16:25156826-25156218 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 36 |
| Conread position: | 1-594 |
| Cow position: | chr16:29033113-29033711 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 1-594 |
| Cow position: | chr16:42740026-42739433 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 7 |
| Conread position: | 2-130 |
| Cow position: | chr16:42050990-42050858 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-159 |
| Cow position: | chr16:2727888-2727730 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 16 |
| Conread position: | 2-173 |
| Cow position: | chr16:20254914-20254739 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-174 |
| Cow position: | chr16:31592507-31592334 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 2-208 |
| Cow position: | chr16:30047889-30048101 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 93, 35 |
| Conread position: | 2-253 |
| Cow position: | chr16:44966569-44966811 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 2-262 |
| Cow position: | chr16:9929937-9930197 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 93, 110 |
| Conread position: | 2-269 |
| Cow position: | chr16:48626631-48626893 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 86, 176 |
| Conread position: | 3-159 |
| Cow position: | chr16:12538526-12538367 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 92, 77 |
| Conread position: | 3-167 |
| Cow position: | chr16:32138-32304 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 95, 30 |
| Conread position: | 3-167 |
| Cow position: | chr16:11052560-11052726 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 58 |
| Conread position: | 3-168 |
| Cow position: | chr16:56551523-56551688 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 95, 34 |
| Conread position: | 3-180 |
| Cow position: | chr16:836427-836608 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 3-182 |
| Cow position: | chr16:25153128-25153304 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 3-567 |
| Cow position: | chr16:49235752-49235194 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 6-238 |
| Cow position: | chr16:34529722-34529965 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 11-159 |
| Cow position: | chr16:28471695-28471544 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 84, 145 |
| Conread position: | 19-262 |
| Cow position: | chr16:32935589-32935832 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 90 |
| Conread position: | 20-171 |
| Cow position: | chr16:6943047-6943202 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 29-166 |
| Cow position: | chr16:36282821-36282963 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 41-278 |
| Cow position: | chr16:16273398-16273156 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 43-146 |
| Cow position: | chr16:4302890-4302783 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 44-170 |
| Cow position: | chr16:29675939-29675810 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 56-587 |
| Cow position: | chr16:25257055-25257593 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 151 |
| Conread position: | 91-569 |
| Cow position: | chr16:5652255-5652740 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 110, 37 |
| Conread position: | 94-269 |
| Cow position: | chr16:23807461-23807638 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 123-464 |
| Cow position: | chr16:42050603-42050271 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 275, 49 |
| Conread position: | 260-594 |
| Cow position: | chr16:18764274-18763957 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 117 |
| Conread position: | 266-594 |
| Cow position: | chr16:16272262-16271933 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 225, 159 |
| Conread position: | 281-581 |
| Cow position: | chr16:49256770-49256473 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 197 |
| Conread position: | 284-575 |
| Cow position: | chr16:5889887-5890164 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 146, 65 |
| Conread position: | 287-545 |
| Cow position: | chr16:18499349-18499094 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 293-566 |
| Cow position: | chr16:23807802-23808056 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 359-584 |
| Cow position: | chr16:37457155-37456926 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 175, 115 |
Show alignments to all cow chromosomes.