Cow genome map
| Conread name: | Thy1-THY010102A12 |
| Conread position: | 1-119 |
| Cow position: | chr17:26205833-26205711 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-143 |
| Cow position: | chr17:2556097-2556242 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 32 |
| Conread position: | 1-156 |
| Cow position: | chr17:9653482-9653323 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-157 |
| Cow position: | chr17:31768065-31767905 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:228334-228172 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:1382840-1382678 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:2579599-2579751 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:3642862-3642700 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:13929642-13929804 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:14894127-14894289 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:15323220-15323381 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 94, 79 |
| Conread position: | 1-159 |
| Cow position: | chr17:15435765-15435927 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:15850370-15850533 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:16890093-16890259 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 16, 163 |
| Conread position: | 1-159 |
| Cow position: | chr17:18103706-18103549 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:43952588-43952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 1-160 |
| Cow position: | chr17:20183257-20183097 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 97, 134 |
| Conread position: | 1-171 |
| Cow position: | chr17:15143393-15143219 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-171 |
| Cow position: | chr17:15156989-15156816 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 1-172 |
| Cow position: | chr17:2248610-2248435 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | chr17:6089187-6089012 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | chr17:24633928-24634103 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr17:1283731-1283555 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr17:18026783-18026607 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-173 |
| Cow position: | chr17:18185559-18185385 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 1-173 |
| Cow position: | chr17:23857060-23856884 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-173 |
| Cow position: | chr17:35592187-35592364 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-174 |
| Cow position: | chr17:181337-181518 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-174 |
| Cow position: | chr17:2287360-2287537 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-174 |
| Cow position: | chr17:8209080-8209261 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-174 |
| Cow position: | chr17:14217050-14216871 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-174 |
| Cow position: | chr17:20665752-20665571 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-174 |
| Cow position: | chr17:23324480-23324299 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-192 |
| Cow position: | chr17:11087750-11087553 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-192 |
| Cow position: | chr17:25737637-25737835 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-193 |
| Cow position: | chr17:1880065-1880267 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-193 |
| Cow position: | chr17:13856795-13856595 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-195 |
| Cow position: | chr17:27345773-27345973 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-198 |
| Cow position: | chr17:44852958-44852758 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 94, 135 |
| Conread position: | 1-202 |
| Cow position: | chr17:2173852-2174055 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 94, 178 |
| Conread position: | 1-211 |
| Cow position: | chr17:2262080-2262294 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 94, 130 |
| Conread position: | 1-211 |
| Cow position: | chr17:43988507-43988725 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 94, 203 |
| Conread position: | 1-261 |
| Cow position: | chr17:4295324-4295581 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 25 |
| Conread position: | 1-261 |
| Cow position: | chr17:42264477-42264738 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 198 |
| Conread position: | 1-321 |
| Cow position: | chr17:15371024-15371352 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 1-445 |
| Cow position: | chr17:14325528-14325091 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 41 |
| Conread position: | 2-192 |
| Cow position: | chr17:6259820-6260015 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 2-198 |
| Cow position: | chr17:22132205-22132403 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 2-266 |
| Cow position: | chr17:6002042-6001777 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 96, 51 |
| Conread position: | 3-159 |
| Cow position: | chr17:40804792-40804953 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 3-173 |
| Cow position: | chr17:1946951-1947119 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 95, 30 |
| Conread position: | 3-173 |
| Cow position: | chr17:4060078-4060249 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 95, 21 |
| Conread position: | 3-187 |
| Cow position: | chr17:20087768-20087582 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 94, 120 |
| Conread position: | 3-220 |
| Cow position: | chr17:2147148-2147370 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 4-172 |
| Cow position: | chr17:22557599-22557771 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 8-159 |
| Cow position: | chr17:34156109-34156264 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 9-159 |
| Cow position: | chr17:19269384-19269230 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 11-130 |
| Cow position: | chr17:249923-250046 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 11-262 |
| Cow position: | chr17:4081615-4081876 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 11-412 |
| Cow position: | chr17:36987687-36987306 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 105 |
| Conread position: | 16-173 |
| Cow position: | chr17:22429504-22429338 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 74, 32 |
| Conread position: | 31-195 |
| Cow position: | chr17:602434-602265 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 38-143 |
| Cow position: | chr17:602694-602803 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 38-211 |
| Cow position: | chr17:152461-152289 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 48-173 |
| Cow position: | chr17:20073216-20073096 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 260-562 |
| Cow position: | chr17:18193503-18193801 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 284-549 |
| Cow position: | chr17:20402014-20402279 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 287-536 |
| Cow position: | chr17:22557938-22558183 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 290-586 |
| Cow position: | chr17:12670137-12669843 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 228, 146 |
| Conread position: | 291-594 |
| Cow position: | chr17:18300460-18300154 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 307-584 |
| Cow position: | chr17:16900203-16899927 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 121 |
| Conread position: | 314-594 |
| Cow position: | chr17:3708826-3708537 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 124 |
| Conread position: | 316-566 |
| Cow position: | chr17:42264883-42265131 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 138, 94 |
| Conread position: | 352-597 |
| Cow position: | chr17:4082055-4082305 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 126 |
| Conread position: | 374-562 |
| Cow position: | chr17:152079-151895 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 29 |
Show alignments to all cow chromosomes.