Cow genome map
| Conread name: | Thy1-THY010102A12 |
| Conread position: | 1-127 |
| Cow position: | chr19:350105-349975 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-129 |
| Cow position: | chr19:32244870-32245002 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-154 |
| Cow position: | chr19:7488499-7488656 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-155 |
| Cow position: | chr19:28581473-28581315 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 1-158 |
| Cow position: | chr19:893429-893268 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr19:38081-38243 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr19:170561-170399 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr19:687251-687411 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 97, 58 |
| Conread position: | 1-159 |
| Cow position: | chr19:4385666-4385817 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 1-159 |
| Cow position: | chr19:5729014-5729177 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-159 |
| Cow position: | chr19:33873612-33873774 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr19:43143902-43144064 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:10672120-10671951 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:28593463-28593619 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 160, 76 |
| Conread position: | 1-168 |
| Cow position: | chr19:76083-75911 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr19:1032261-1032436 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-172 |
| Cow position: | chr19:40852252-40852077 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr19:204147-204323 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-173 |
| Cow position: | chr19:28376670-28376848 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 147 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-174 |
| Cow position: | chr19:7342254-7342435 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-174 |
| Cow position: | chr19:52151644-52151463 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-187 |
| Cow position: | chr19:2274192-2274003 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 159 |
| Conread position: | 1-193 |
| Cow position: | chr19:32665716-32665910 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 1-195 |
| Cow position: | chr19:29209785-29209982 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 1-202 |
| Cow position: | chr19:40817517-40817310 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-211 |
| Cow position: | chr19:772785-773000 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 203 |
| Conread position: | 1-211 |
| Cow position: | chr19:32211887-32211669 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 94, 203 |
| Conread position: | 1-222 |
| Cow position: | chr19:6553788-6554006 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 56 |
| Conread position: | 1-262 |
| Cow position: | chr19:42648926-42648664 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 111 |
| Conread position: | 1-364 |
| Cow position: | chr19:32223261-32222901 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 2-158 |
| Cow position: | chr19:439470-439310 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-158 |
| Cow position: | chr19:20104900-20105060 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-159 |
| Cow position: | chr19:33941797-33941958 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 2-166 |
| Cow position: | chr19:172398-172566 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 2-173 |
| Cow position: | chr19:416848-417022 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 93, 147 |
| Conread position: | 2-202 |
| Cow position: | chr19:439274-439069 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 93, 166 |
| Conread position: | 2-281 |
| Cow position: | chr19:35376974-35377249 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 93, 62 |
| Conread position: | 2-594 |
| Cow position: | chr19:352806-352199 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 353 |
| Conread position: | 3-581 |
| Cow position: | chr19:377714-377136 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 36 |
| Conread position: | 9-191 |
| Cow position: | chr19:341416-341602 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 86, 9 |
| Conread position: | 11-204 |
| Cow position: | chr19:32202936-32203132 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 11-272 |
| Cow position: | chr19:42249000-42249265 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 84, 128 |
| Conread position: | 26-568 |
| Cow position: | chr19:27052638-27052087 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 111 |
| Conread position: | 30-594 |
| Cow position: | chr19:163215-162646 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 161 |
| Conread position: | 38-594 |
| Cow position: | chr19:42908-43469 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 235 |
| Conread position: | 54-172 |
| Cow position: | chr19:5208411-5208533 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 100-568 |
| Cow position: | chr19:263092-263576 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 174 |
| Conread position: | 109-523 |
| Cow position: | chr19:137058-136648 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 54 |
| Conread position: | 143-517 |
| Cow position: | chr19:47610415-47610037 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 188 |
| Conread position: | 143-522 |
| Cow position: | chr19:44532444-44532835 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 348 |
| Conread position: | 220-594 |
| Cow position: | chr19:3138005-3138390 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 224 |
| Conread position: | 261-583 |
| Cow position: | chr19:32203275-32203596 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 261-591 |
| Cow position: | chr19:17018954-17019282 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 270-487 |
| Cow position: | chr19:44224804-44224584 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 122 |
| Conread position: | 314-584 |
| Cow position: | chr19:32182906-32182638 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 135 |
| Conread position: | 356-594 |
| Cow position: | chr19:39689240-39689477 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 153, 69 |
| Conread position: | 373-594 |
| Cow position: | chr19:32222788-32222565 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 88, 109 |
| Conread position: | 373-594 |
| Cow position: | chr19:39669275-39669055 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 399-594 |
| Cow position: | chr19:35377419-35377616 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 50 |
Show alignments to all cow chromosomes.