Cow genome map
| Conread name: | Thy1-THY010102A12 |
| Conread position: | 1-129 |
| Cow position: | chr21:47948371-47948502 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 97, 57 |
| Conread position: | 1-146 |
| Cow position: | chr21:40271415-40271266 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-155 |
| Cow position: | chr21:10850342-10850499 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 69 |
| Conread position: | 1-158 |
| Cow position: | chr21:4589729-4589568 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-158 |
| Cow position: | chr21:12055739-12055578 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-158 |
| Cow position: | chr21:33251768-33251928 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 1-158 |
| Cow position: | chr21:37045172-37045333 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr21:1191425-1191587 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr21:6339828-6339990 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr21:11453394-11453232 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr21:30562064-30562226 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-159 |
| Cow position: | chr21:30599662-30599502 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 1-160 |
| Cow position: | chr21:2788730-2788568 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 89, 80 |
| Conread position: | 1-172 |
| Cow position: | chr21:2476265-2476104 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-172 |
| Cow position: | chr21:4090911-4091086 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | chr21:26650303-26650478 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | chr21:46915850-46916025 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr21:146185-146360 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 1-173 |
| Cow position: | chr21:1291929-1291753 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-173 |
| Cow position: | chr21:2529866-2529690 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 1-173 |
| Cow position: | chr21:2883486-2883311 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 94, 145 |
| Conread position: | 1-173 |
| Cow position: | chr21:3798109-3797933 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-173 |
| Cow position: | chr21:4457088-4457264 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr21:34258728-34258551 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 1-173 |
| Cow position: | chr21:34293278-34293453 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-173 |
| Cow position: | chr21:35596630-35596804 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 80 |
| Conread position: | 1-174 |
| Cow position: | chr21:3615574-3615750 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 94, 80 |
| Conread position: | 1-174 |
| Cow position: | chr21:11505849-11506039 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-192 |
| Cow position: | chr21:2416490-2416676 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 174, 32 |
| Conread position: | 1-193 |
| Cow position: | chr21:18820166-18819970 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 93, 84 |
| Conread position: | 1-211 |
| Cow position: | chr21:26638203-26637985 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 94, 203 |
| Conread position: | 1-211 |
| Cow position: | chr21:39425325-39425543 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 94, 204 |
| Conread position: | 1-219 |
| Cow position: | chr21:2510913-2511144 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-358 |
| Cow position: | chr21:23812137-23812504 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 167 |
| Conread position: | 1-562 |
| Cow position: | chr21:4183782-4184331 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 53 |
| Conread position: | 1-578 |
| Cow position: | chr21:359296-359880 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 2-159 |
| Cow position: | chr21:3779029-3779190 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-173 |
| Cow position: | chr21:13123741-13123568 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 93, 14 |
| Conread position: | 2-194 |
| Cow position: | chr21:4087064-4087261 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 141 |
| Conread position: | 2-299 |
| Cow position: | chr21:21914549-21914854 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 2-370 |
| Cow position: | chr21:30226282-30226650 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 163 |
| Conread position: | 2-578 |
| Cow position: | chr21:2541151-2540572 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 358 |
| Conread position: | 3-159 |
| Cow position: | chr21:31559391-31559232 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 95, 5 |
| Conread position: | 3-195 |
| Cow position: | chr21:4077103-4077299 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 3-240 |
| Cow position: | chr21:21517389-21517631 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 183 |
| Conread position: | 9-155 |
| Cow position: | chr21:48116371-48116521 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 9-158 |
| Cow position: | chr21:27282655-27282808 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 15-557 |
| Cow position: | chr21:9870022-9870549 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 183 |
| Conread position: | 17-594 |
| Cow position: | chr21:9891880-9892462 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 122 |
| Conread position: | 18-159 |
| Cow position: | chr21:2674332-2674188 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 50 |
| Conread position: | 32-166 |
| Cow position: | chr21:2716425-2716286 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 75-497 |
| Cow position: | chr21:29105-29530 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 257 |
| Conread position: | 260-547 |
| Cow position: | chr21:21947046-21946772 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 268-587 |
| Cow position: | chr21:2710726-2711024 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 309, 18 |
| Conread position: | 272-594 |
| Cow position: | chr21:21926116-21925795 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 358-584 |
| Cow position: | chr21:23861612-23861838 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 73, 118 |
| Conread position: | 364-584 |
| Cow position: | chr21:2940427-2940206 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 364-587 |
| Cow position: | chr21:6109861-6110082 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 156, 69 |
| Conread position: | 406-594 |
| Cow position: | chr21:27565738-27565925 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 23 |
Show alignments to all cow chromosomes.