Cow genome map
| Conread name: | Thy1-THY010102A12 |
| Conread position: | 1-122 |
| Cow position: | chr22:32485263-32485139 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 94, 75 |
| Conread position: | 1-138 |
| Cow position: | chr22:45879521-45879379 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-145 |
| Cow position: | chr22:560616-560468 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 1-146 |
| Cow position: | chr22:46581498-46581350 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 1-150 |
| Cow position: | chr22:8740813-8740665 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 36 |
| Conread position: | 1-154 |
| Cow position: | chr22:36183847-36184002 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 1-155 |
| Cow position: | chr22:18816296-18816139 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 94, 145 |
| Conread position: | 1-155 |
| Cow position: | chr22:21589413-21589571 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr22:15313864-15313701 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-159 |
| Cow position: | chr22:19143610-19143448 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr22:20240752-20240591 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 1-159 |
| Cow position: | chr22:27284120-27284282 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr22:31313430-31313590 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 145 |
| Conread position: | 1-159 |
| Cow position: | chr22:31334946-31334787 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 79 |
| Conread position: | 1-159 |
| Cow position: | chr22:34168421-34168582 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 94, 128 |
| Conread position: | 1-159 |
| Cow position: | chr22:39469434-39469272 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr22:42991261-42991423 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr22:44934068-44934230 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-160 |
| Cow position: | chr22:1319486-1319649 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-166 |
| Cow position: | chr22:16200562-16200733 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-167 |
| Cow position: | chr22:5233216-5233046 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | chr22:17328650-17328475 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | chr22:44369535-44369362 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 89, 70 |
| Conread position: | 1-173 |
| Cow position: | chr22:157818-157641 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr22:525606-525428 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-173 |
| Cow position: | chr22:5308191-5308369 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 1-173 |
| Cow position: | chr22:5932908-5932735 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 1-173 |
| Cow position: | chr22:38937994-38937818 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr22:39882087-39881911 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-173 |
| Cow position: | chr22:42771544-42771720 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-173 |
| Cow position: | chr22:46547575-46547399 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-174 |
| Cow position: | chr22:693715-693893 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-174 |
| Cow position: | chr22:6020751-6020932 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-174 |
| Cow position: | chr22:36533654-36533475 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-175 |
| Cow position: | chr22:10546734-10546915 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-187 |
| Cow position: | chr22:36736847-36737044 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-193 |
| Cow position: | chr22:46853432-46853633 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 85, 57 |
| Conread position: | 1-202 |
| Cow position: | chr22:35672267-35672058 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 97, 203 |
| Conread position: | 1-208 |
| Cow position: | chr22:44352868-44352664 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 180, 40 |
| Conread position: | 1-211 |
| Cow position: | chr22:537190-537408 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 94, 203 |
| Conread position: | 1-211 |
| Cow position: | chr22:1878882-1879100 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 89, 203 |
| Conread position: | 1-211 |
| Cow position: | chr22:3278265-3278049 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 97, 201 |
| Conread position: | 1-211 |
| Cow position: | chr22:27309684-27309466 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 94, 203 |
| Conread position: | 1-211 |
| Cow position: | chr22:44489976-44490192 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 94, 201 |
| Conread position: | 1-225 |
| Cow position: | chr22:1048496-1048718 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 1-253 |
| Cow position: | chr22:7277610-7277863 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 97, 154 |
| Conread position: | 1-260 |
| Cow position: | chr22:34598756-34599010 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 112, 44 |
| Conread position: | 1-274 |
| Cow position: | chr22:6503588-6503310 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-283 |
| Cow position: | chr22:11031049-11031337 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-381 |
| Cow position: | chr22:8136115-8135731 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 167 |
| Conread position: | 1-569 |
| Cow position: | chr22:41419605-41419046 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 222 |
| Conread position: | 1-594 |
| Cow position: | chr22:1283561-1282964 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 125 |
| Conread position: | 1-594 |
| Cow position: | chr22:13917592-13918185 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 423 |
| Conread position: | 2-114 |
| Cow position: | chr22:48004349-48004462 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 93, 16 |
| Conread position: | 2-159 |
| Cow position: | chr22:10909743-10909582 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-159 |
| Cow position: | chr22:36861440-36861279 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-187 |
| Cow position: | chr22:44475334-44475513 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 2-193 |
| Cow position: | chr22:117752-117552 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 3-139 |
| Cow position: | chr22:44396542-44396681 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 92, 15 |
| Conread position: | 3-167 |
| Cow position: | chr22:18027370-18027538 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 3-193 |
| Cow position: | chr22:15851421-15851605 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 3-241 |
| Cow position: | chr22:309869-310106 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 89, 152 |
| Conread position: | 3-578 |
| Cow position: | chr22:44609687-44610239 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 3-594 |
| Cow position: | chr22:23853423-23854019 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 5-208 |
| Cow position: | chr22:5672830-5673040 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 6-241 |
| Cow position: | chr22:1321687-1321919 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 120 |
| Conread position: | 8-338 |
| Cow position: | chr22:1270435-1270114 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 11-174 |
| Cow position: | chr22:37266072-37266241 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 19-172 |
| Cow position: | chr22:16813993-16814150 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 20-173 |
| Cow position: | chr22:1860847-1861004 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 30-159 |
| Cow position: | chr22:327050-326919 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 68, 15 |
| Conread position: | 39-594 |
| Cow position: | chr22:3306606-3306045 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 164-584 |
| Cow position: | chr22:35907461-35907048 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 85 |
| Conread position: | 172-388 |
| Cow position: | chr22:37132147-37132357 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 68, 116 |
| Conread position: | 172-513 |
| Cow position: | chr22:46547834-46548158 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 69, 182 |
| Conread position: | 232-594 |
| Cow position: | chr22:1322129-1322479 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 284-578 |
| Cow position: | chr22:6503097-6502795 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 157 |
| Conread position: | 291-557 |
| Cow position: | chr22:8740380-8740132 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 316-597 |
| Cow position: | chr22:44475956-44476229 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 357-584 |
| Cow position: | chr22:2395918-2395687 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 100 |
| Conread position: | 358-594 |
| Cow position: | chr22:1269666-1269437 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 382-578 |
| Cow position: | chr22:11031902-11032090 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
Show alignments to all cow chromosomes.