Cow genome map
| Conread name: | Thy1-THY010102A12 |
| Conread position: | 1-113 |
| Cow position: | chr24:13524279-13524395 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-113 |
| Cow position: | chr24:22952311-22952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-143 |
| Cow position: | chr24:44017721-44017867 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-146 |
| Cow position: | chr24:37217175-37217323 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:148444-148282 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:5993054-5992892 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:12335599-12335438 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 94, 128 |
| Conread position: | 1-159 |
| Cow position: | chr24:12485142-12484980 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:19833560-19833722 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:22793347-22793509 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:29187458-29187620 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:33739162-33739003 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 97, 69 |
| Conread position: | 1-166 |
| Cow position: | chr24:9188556-9188387 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 110 |
| Conread position: | 1-167 |
| Cow position: | chr24:7061564-7061734 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | chr24:6434415-6434592 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | chr24:8030326-8030501 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | chr24:14585251-14585426 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | chr24:17696798-17696628 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 1-172 |
| Cow position: | chr24:40549049-40549224 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-173 |
| Cow position: | chr24:12086373-12086549 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr24:33933541-33933717 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-174 |
| Cow position: | chr24:16084485-16084303 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1-190 |
| Cow position: | chr24:12237229-12237419 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 1-193 |
| Cow position: | chr24:6145544-6145740 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 1-193 |
| Cow position: | chr24:35838441-35838245 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 97, 70 |
| Conread position: | 1-202 |
| Cow position: | chr24:9092107-9091903 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 94, 68 |
| Conread position: | 1-203 |
| Cow position: | chr24:6335865-6336060 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 97, 30 |
| Conread position: | 1-211 |
| Cow position: | chr24:6645878-6646093 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 97, 200 |
| Conread position: | 1-240 |
| Cow position: | chr24:8152830-8152587 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 153 |
| Conread position: | 1-241 |
| Cow position: | chr24:12288214-12287977 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 95, 50 |
| Conread position: | 1-258 |
| Cow position: | chr24:36708022-36708277 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 1-292 |
| Cow position: | chr24:1447731-1448027 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 74 |
| Conread position: | 1-563 |
| Cow position: | chr24:12797593-12797029 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 146 |
| Conread position: | 1-584 |
| Cow position: | chr24:36559912-36559330 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 245 |
| Conread position: | 2-587 |
| Cow position: | chr24:16649141-16648549 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 171 |
| Conread position: | 3-155 |
| Cow position: | chr24:4415353-4415197 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 144 |
| Conread position: | 3-159 |
| Cow position: | chr24:6024918-6024761 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 92, 30 |
| Conread position: | 3-167 |
| Cow position: | chr24:6084194-6084362 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 3-173 |
| Cow position: | chr24:14384437-14384264 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 15 |
| Conread position: | 3-239 |
| Cow position: | chr24:16376701-16376934 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 3-247 |
| Cow position: | chr24:35841445-35841196 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 9-240 |
| Cow position: | chr24:6537723-6537949 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 11-193 |
| Cow position: | chr24:6660417-6660227 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 18-253 |
| Cow position: | chr24:7091398-7091167 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 20-282 |
| Cow position: | chr24:14333237-14333504 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 30-226 |
| Cow position: | chr24:17303408-17303213 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 31-253 |
| Cow position: | chr24:38636810-38637038 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 45-174 |
| Cow position: | chr24:43813983-43814120 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 47-262 |
| Cow position: | chr24:13302762-13302545 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 186-584 |
| Cow position: | chr24:12206273-12205877 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 169 |
| Conread position: | 250-581 |
| Cow position: | chr24:17313440-17313115 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 107, 181 |
| Conread position: | 260-580 |
| Cow position: | chr24:36708363-36708689 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 261-568 |
| Cow position: | chr24:14333574-14333882 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 178 |
| Conread position: | 271-567 |
| Cow position: | chr24:38637672-38637955 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 160, 22 |
| Conread position: | 319-594 |
| Cow position: | chr24:6336014-6336292 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 158 |
| Conread position: | 364-594 |
| Cow position: | chr24:16472105-16472337 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 373-594 |
| Cow position: | chr24:13302323-13302100 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 387-584 |
| Cow position: | chr24:32332258-32332452 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 122, 40 |
Show alignments to all cow chromosomes.