Cow genome map
| Conread name: | Thy1-THY010102A12 |
| Conread position: | 1-146 |
| Cow position: | chr28:1504985-1505134 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-147 |
| Cow position: | chr28:17667380-17667230 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-153 |
| Cow position: | chr28:1931851-1931695 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-155 |
| Cow position: | chr28:1814734-1814576 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-158 |
| Cow position: | chr28:8378702-8378863 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-158 |
| Cow position: | chr28:24587568-24587729 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:485429-485267 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:3192658-3192496 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:5114678-5114516 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:5751573-5751410 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:7740619-7740776 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:12150444-12150599 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 1-159 |
| Cow position: | chr28:12410090-12409930 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 1-159 |
| Cow position: | chr28:13460103-13460265 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:14705538-14705376 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 1-159 |
| Cow position: | chr28:14750681-14750842 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 1-159 |
| Cow position: | chr28:15377858-15377697 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 1-159 |
| Cow position: | chr28:17388615-17388777 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:29819867-29820029 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:32792246-32792085 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:34594112-34594274 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-166 |
| Cow position: | chr28:9136917-9136749 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 97, 39 |
| Conread position: | 1-172 |
| Cow position: | chr28:13440743-13440568 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr28:1167749-1167572 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-173 |
| Cow position: | chr28:2592048-2592224 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-173 |
| Cow position: | chr28:2724757-2724581 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 94, 139 |
| Conread position: | 1-173 |
| Cow position: | chr28:4380711-4380535 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr28:7002123-7002299 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 94, 163 |
| Conread position: | 1-173 |
| Cow position: | chr28:9954266-9954442 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-173 |
| Cow position: | chr28:10581853-10581675 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-173 |
| Cow position: | chr28:13490284-13490462 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr28:24667713-24667888 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 94, 139 |
| Conread position: | 1-173 |
| Cow position: | chr28:33252447-33252621 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 96, 63 |
| Conread position: | 1-174 |
| Cow position: | chr28:7822391-7822572 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-195 |
| Cow position: | chr28:9155146-9154951 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 1-196 |
| Cow position: | chr28:8721314-8721118 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 94, 74 |
| Conread position: | 1-198 |
| Cow position: | chr28:22233264-22233059 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 1-208 |
| Cow position: | chr28:6780200-6779983 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-211 |
| Cow position: | chr28:1953263-1953481 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 94, 203 |
| Conread position: | 1-291 |
| Cow position: | chr28:10618981-10618695 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 165 |
| Conread position: | 1-291 |
| Cow position: | chr28:21325926-21326209 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 95, 7 |
| Conread position: | 1-392 |
| Cow position: | chr28:2989584-2989175 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 164 |
| Conread position: | 1-568 |
| Cow position: | chr28:5797565-5798121 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 152 |
| Conread position: | 1-584 |
| Cow position: | chr28:5812825-5813400 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 123 |
| Conread position: | 1-594 |
| Cow position: | chr28:7790153-7789550 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 261 |
| Conread position: | 1-594 |
| Cow position: | chr28:21359135-21359739 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 486 |
| Conread position: | 2-202 |
| Cow position: | chr28:15682255-15682456 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 2-240 |
| Cow position: | chr28:34649078-34649320 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 2-262 |
| Cow position: | chr28:2846040-2845780 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 93, 172 |
| Conread position: | 3-140 |
| Cow position: | chr28:5565989-5566130 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 3-159 |
| Cow position: | chr28:18520328-18520164 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 3-172 |
| Cow position: | chr28:17324215-17324036 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 92 |
| Conread position: | 3-172 |
| Cow position: | chr28:30805552-30805379 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 3-173 |
| Cow position: | chr28:22261015-22260842 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 158 |
| Conread position: | 3-584 |
| Cow position: | chr28:10071120-10071674 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 5-166 |
| Cow position: | chr28:6539124-6538958 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 5-240 |
| Cow position: | chr28:10463015-10462773 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 136 |
| Conread position: | 9-146 |
| Cow position: | chr28:782536-782677 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 9-240 |
| Cow position: | chr28:29092843-29092615 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 106, 96 |
| Conread position: | 10-159 |
| Cow position: | chr28:2083739-2083891 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 12-173 |
| Cow position: | chr28:1387255-1387091 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 83, 73 |
| Conread position: | 29-159 |
| Cow position: | chr28:26426090-26425956 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 42-193 |
| Cow position: | chr28:24652942-24652786 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 66-258 |
| Cow position: | chr28:11357515-11357320 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 32, 156 |
| Conread position: | 102-547 |
| Cow position: | chr28:7817377-7817822 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 138 |
| Conread position: | 104-594 |
| Cow position: | chr28:10498087-10497614 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 32 |
| Conread position: | 116-542 |
| Cow position: | chr28:5764499-5764912 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 106 |
| Conread position: | 176-534 |
| Cow position: | chr28:28117808-28118168 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 260-474 |
| Cow position: | chr28:11356989-11356769 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 260-594 |
| Cow position: | chr28:29092504-29092165 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 287-594 |
| Cow position: | chr28:10647288-10646985 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 78, 27 |
| Conread position: | 320-564 |
| Cow position: | chr28:24704363-24704609 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 192, 154 |
| Conread position: | 373-575 |
| Cow position: | chr28:10617638-10617445 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 148, 100 |
| Conread position: | 374-547 |
| Cow position: | chr28:10462565-10462390 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 380-576 |
| Cow position: | chr28:2989048-2988856 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 389-578 |
| Cow position: | chr28:8721152-8720967 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 84 |
| Conread position: | 399-585 |
| Cow position: | chr28:14946848-14947027 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 120, 28 |
Show alignments to all cow chromosomes.