Cow genome map
| Conread name: | Thy1-THY010102A12 |
| Conread position: | 1-96 |
| Cow position: | chr29:17663003-17663098 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-96 |
| Cow position: | chr29:32316140-32316235 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr29:42650383-42650534 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-146 |
| Cow position: | chr29:42802243-42802394 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-148 |
| Cow position: | chr29:10847993-10847843 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 88, 146 |
| Conread position: | 1-155 |
| Cow position: | chr29:6266402-6266244 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-155 |
| Cow position: | chr29:14586021-14586179 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-155 |
| Cow position: | chr29:38227079-38227237 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-155 |
| Cow position: | chr29:40502881-40502725 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-158 |
| Cow position: | chr29:15894751-15894590 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:48379-48219 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:669958-669796 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:2099944-2100106 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:2690001-2690161 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 1-159 |
| Cow position: | chr29:7431116-7430958 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 79 |
| Conread position: | 1-159 |
| Cow position: | chr29:7840896-7841057 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 1-159 |
| Cow position: | chr29:13582171-13582329 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 1-159 |
| Cow position: | chr29:16022629-16022791 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:18856845-18856683 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:19623148-19622986 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:19653207-19653369 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:20251259-20251420 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 1-159 |
| Cow position: | chr29:25932445-25932283 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:26164723-26164561 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:27980818-27980658 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 94, 124 |
| Conread position: | 1-159 |
| Cow position: | chr29:32539909-32540071 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:34799709-34799546 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:39079613-39079451 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:45459812-45459977 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:45587261-45587099 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-166 |
| Cow position: | chr29:43322659-43322823 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 1-172 |
| Cow position: | chr29:34925578-34925753 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr29:2466235-2466059 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-173 |
| Cow position: | chr29:2841274-2841098 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-173 |
| Cow position: | chr29:10648152-10647976 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 89, 136 |
| Conread position: | 1-173 |
| Cow position: | chr29:21426925-21426755 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 93, 116 |
| Conread position: | 1-173 |
| Cow position: | chr29:27040670-27040497 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 94, 113 |
| Conread position: | 1-173 |
| Cow position: | chr29:35196766-35196939 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 1-173 |
| Cow position: | chr29:43365893-43365727 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-175 |
| Cow position: | chr29:19885169-19885351 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-183 |
| Cow position: | chr29:2750313-2750136 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 97, 15 |
| Conread position: | 1-193 |
| Cow position: | chr29:9643660-9643461 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 1-195 |
| Cow position: | chr29:10823870-10823670 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-196 |
| Cow position: | chr29:410426-410227 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-196 |
| Cow position: | chr29:23975939-23976138 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-202 |
| Cow position: | chr29:610513-610304 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 203 |
| Conread position: | 1-202 |
| Cow position: | chr29:5957703-5957910 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-235 |
| Cow position: | chr29:30811628-30811859 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 151, 30 |
| Conread position: | 1-240 |
| Cow position: | chr29:1715341-1715583 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 94, 106 |
| Conread position: | 1-247 |
| Cow position: | chr29:24709149-24708900 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 24 |
| Conread position: | 1-250 |
| Cow position: | chr29:104666-104913 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 137 |
| Conread position: | 1-292 |
| Cow position: | chr29:15950092-15949798 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 95, 162 |
| Conread position: | 2-145 |
| Cow position: | chr29:14013565-14013711 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 2-145 |
| Cow position: | chr29:14072846-14072700 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 3-159 |
| Cow position: | chr29:31181516-31181676 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 3-166 |
| Cow position: | chr29:16770224-16770392 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 3-173 |
| Cow position: | chr29:11049379-11049553 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 3-173 |
| Cow position: | chr29:21543268-21543094 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 3-208 |
| Cow position: | chr29:35296975-35297188 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 92, 196 |
| Conread position: | 8-172 |
| Cow position: | chr29:27250236-27250068 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 8-240 |
| Cow position: | chr29:803242-803010 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 26-257 |
| Cow position: | chr29:6471541-6471766 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 189, 54 |
| Conread position: | 38-594 |
| Cow position: | chr29:14086312-14085768 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 41-367 |
| Cow position: | chr29:5983070-5982736 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 45-159 |
| Cow position: | chr29:15968718-15968600 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 93-306 |
| Cow position: | chr29:8331137-8330930 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 185-332 |
| Cow position: | chr29:2749929-2749781 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 19, 113 |
| Conread position: | 292-584 |
| Cow position: | chr29:802868-802570 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 316-549 |
| Cow position: | chr29:2951394-2951172 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 358-528 |
| Cow position: | chr29:105161-105331 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 150, 116 |
| Conread position: | 364-594 |
| Cow position: | chr29:9617428-9617659 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 125, 65 |
Show alignments to all cow chromosomes.