Cow genome map

Conread name: Thy1-THY010102A12

Conread position: 1-96
Cow position: chr6:57869945-57869850 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-119
Cow position: chr6:913700-913822 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 1-140
Cow position: chr6:5951188-5951045 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 94, 0

Conread position: 1-140
Cow position: chr6:28275040-28275183 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 1-146
Cow position: chr6:66231850-66232002 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 1-155
Cow position: chr6:3889421-3889262 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 0

Conread position: 1-155
Cow position: chr6:8761246-8761089 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 97, 0

Conread position: 1-155
Cow position: chr6:17046113-17046271 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 93, 0

Conread position: 1-155
Cow position: chr6:47043146-47042983 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 1-155
Cow position: chr6:65841642-65841800 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:2374758-2374920 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 133
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:2554764-2554926 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:3277892-3277730 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:8201795-8201957 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:13104116-13104278 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 133
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:13847093-13847252 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 97, 72

Conread position: 1-159
Cow position: chr6:15141122-15140960 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:15280494-15280332 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 97, 0

Conread position: 1-159
Cow position: chr6:16051938-16052100 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:27169635-27169801 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 1-159
Cow position: chr6:27529949-27529787 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:33459921-33460083 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 93, 0

Conread position: 1-159
Cow position: chr6:34127411-34127573 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 133
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:34892947-34892786 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 94, 17

Conread position: 1-159
Cow position: chr6:35876660-35876498 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:40251721-40251883 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chr6:55544269-55544107 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 97, 0

Conread position: 1-159
Cow position: chr6:58408854-58408692 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 133
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-166
Cow position: chr6:65822068-65821898 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 94, 0

Conread position: 1-167
Cow position: chr6:44150498-44150327 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr6:7866693-7866518 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr6:28063396-28063571 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 97, 15

Conread position: 1-173
Cow position: chr6:702013-702186 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 160, 95

Conread position: 1-173
Cow position: chr6:19453975-19454149 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 89, 28

Conread position: 1-173
Cow position: chr6:25214316-25214493 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chr6:27469309-27469481 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 94, 63

Conread position: 1-173
Cow position: chr6:29311549-29311725 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chr6:36526101-36526280 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-173
Cow position: chr6:65880925-65881101 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chr6:65927994-65928170 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chr6:331410-331230 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 97, 54

Conread position: 1-174
Cow position: chr6:3149062-3149243 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chr6:10558602-10558425 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 97, 0

Conread position: 1-174
Cow position: chr6:13943966-13944146 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 0

Conread position: 1-174
Cow position: chr6:17598221-17598040 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 145
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chr6:43617774-43617954 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 94, 32

Conread position: 1-174
Cow position: chr6:44029101-44029278 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 97, 128

Conread position: 1-180
Cow position: chr6:3488342-3488159 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 180

Conread position: 1-192
Cow position: chr6:13276858-13277056 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 89, 0

Conread position: 1-193
Cow position: chr6:11277638-11277443 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 18

Conread position: 1-194
Cow position: chr6:13317431-13317244 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 181, 91

Conread position: 1-198
Cow position: chr6:1405180-1404973 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 1-198
Cow position: chr6:1411882-1411675 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 1-198
Cow position: chr6:65899844-65899642 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 79, 17

Conread position: 1-202
Cow position: chr6:30479157-30479362 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 94, 0

Conread position: 1-202
Cow position: chr6:39908585-39908794 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 94, 203

Conread position: 1-202
Cow position: chr6:40554527-40554326 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 89, 17

Conread position: 1-211
Cow position: chr6:68026850-68027068 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 173
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 94, 206

Conread position: 1-223
Cow position: chr6:40315111-40315329 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 160, 100

Conread position: 1-231
Cow position: chr6:26670800-26670562 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 94, 206

Conread position: 1-241
Cow position: chr6:1100529-1100285 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 96, 177

Conread position: 1-262
Cow position: chr6:35420544-35420286 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 203
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 97, 17

Conread position: 1-415
Cow position: chr6:37116197-37116603 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 47

Conread position: 1-568
Cow position: chr6:38232335-38232895 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 371

Conread position: 2-159
Cow position: chr6:28491455-28491294 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 131
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 93, 0

Conread position: 2-160
Cow position: chr6:65007747-65007907 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 136
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 93, 44

Conread position: 3-159
Cow position: chr6:24239125-24239285 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 92, 0

Conread position: 3-231
Cow position: chr6:7179636-7179401 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 92, 0

Conread position: 3-568
Cow position: chr6:6476423-6475859 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 35

Conread position: 4-238
Cow position: chr6:32330729-32330496 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 203, 0

Conread position: 9-155
Cow position: chr6:64715295-64715445 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 86, 0

Conread position: 9-173
Cow position: chr6:6566671-6566839 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 89, 0

Conread position: 9-250
Cow position: chr6:59740991-59740746 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 86, 20

Conread position: 10-159
Cow position: chr6:20561045-20560892 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 87, 0

Conread position: 11-208
Cow position: chr6:28105776-28105569 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 83, 44

Conread position: 12-159
Cow position: chr6:30275109-30274959 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 83, 124

Conread position: 12-288
Cow position: chr6:10641229-10641509 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 63

Conread position: 15-463
Cow position: chr6:43608286-43607834 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 139

Conread position: 26-174
Cow position: chr6:7141403-7141248 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 69, 114

Conread position: 29-195
Cow position: chr6:59919199-59919023 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 69, 0

Conread position: 34-202
Cow position: chr6:52805122-52805290 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 73, 164

Conread position: 39-202
Cow position: chr6:1822544-1822379 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 147

Conread position: 43-172
Cow position: chr6:10499624-10499491 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 54-308
Cow position: chr6:14853362-14853115 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 32, 71

Conread position: 260-579
Cow position: chr6:7179291-7178966 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 230
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 34, 69

Conread position: 271-594
Cow position: chr6:10643543-10643872 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 182

Conread position: 287-495
Cow position: chr6:35419801-35419604 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 190, 139

Conread position: 291-597
Cow position: chr6:66541645-66541958 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 205
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 186, 24

Conread position: 358-584
Cow position: chr6:2887269-2887482 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 374-594
Cow position: chr6:33995214-33995002 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 56

Conread position: 389-594
Cow position: chr6:8021044-8021251 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 111, 85

Conread position: 454-587
Cow position: chr6:44550912-44550776 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 21

Show alignments to all cow chromosomes.