Cow genome map

Conread name: Thy1-THY010102A12

Conread position: 1-90
Cow position: chrX:3085009-3084920 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 78
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-129
Cow position: chrX:2859908-2859776 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 112
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 1-129
Cow position: chrX:26400574-26400444 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 96, 110

Conread position: 1-134
Cow position: chrX:29853673-29853536 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 94, 0

Conread position: 1-145
Cow position: chrX:13413223-13413075 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 1-146
Cow position: chrX:11663612-11663463 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 123
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-146
Cow position: chrX:23276915-23277064 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 94, 0

Conread position: 1-150
Cow position: chrX:38575930-38575775 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 132

Conread position: 1-153
Cow position: chrX:15127349-15127193 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 89, 0

Conread position: 1-154
Cow position: chrX:30184001-30183844 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 94, 0

Conread position: 1-155
Cow position: chrX:21829417-21829575 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 1-155
Cow position: chrX:23391706-23391548 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 1-157
Cow position: chrX:12803971-12803811 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-157
Cow position: chrX:20316162-20316002 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 131
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 51, 56

Conread position: 1-158
Cow position: chrX:7751793-7751954 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 1-158
Cow position: chrX:13076804-13076643 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 1-158
Cow position: chrX:13097378-13097217 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 1-158
Cow position: chrX:15179538-15179377 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 133
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-158
Cow position: chrX:29947600-29947761 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 132
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:1943151-1942989 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:2482745-2482583 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-159
Cow position: chrX:2562964-2562802 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:5863291-5863453 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 94, 138

Conread position: 1-159
Cow position: chrX:7093491-7093653 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:9008231-9008393 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 1-159
Cow position: chrX:11465109-11464947 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 95, 0

Conread position: 1-159
Cow position: chrX:12280376-12280215 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 97, 67

Conread position: 1-159
Cow position: chrX:12353133-12353295 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 134
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 20, 14

Conread position: 1-159
Cow position: chrX:12654862-12654705 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 94, 29

Conread position: 1-159
Cow position: chrX:13398227-13398065 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 135
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 96, 0

Conread position: 1-159
Cow position: chrX:16699193-16699355 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 97, 0

Conread position: 1-159
Cow position: chrX:17050986-17051150 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 134
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 1-159
Cow position: chrX:18219290-18219452 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:20360158-20359996 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 133
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:21222821-21222983 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:22488074-22488236 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:23455685-23455523 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:24089295-24089457 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:26527869-26528031 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:26758712-26758550 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 89, 0

Conread position: 1-159
Cow position: chrX:26767305-26767143 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:28584873-28585035 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:30179101-30178940 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 94, 17

Conread position: 1-159
Cow position: chrX:30232215-30232053 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 89, 0

Conread position: 1-159
Cow position: chrX:30711246-30711404 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 26, 97

Conread position: 1-159
Cow position: chrX:35529753-35529917 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 96, 0

Conread position: 1-159
Cow position: chrX:37848907-37849069 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-159
Cow position: chrX:38146198-38146360 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 1-167
Cow position: chrX:6873178-6873010 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 96, 122

Conread position: 1-167
Cow position: chrX:16812700-16812531 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 96, 140

Conread position: 1-167
Cow position: chrX:22582807-22582636 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 138
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 80, 0

Conread position: 1-167
Cow position: chrX:40057172-40057001 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 140
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 97, 0

Conread position: 1-171
Cow position: chrX:5323830-5323656 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 98, 0

Conread position: 1-171
Cow position: chrX:9125252-9125426 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 138
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-171
Cow position: chrX:21340293-21340471 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 79, 0

Conread position: 1-171
Cow position: chrX:22778205-22778380 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 94, 137

Conread position: 1-172
Cow position: chrX:982531-982706 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 142
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chrX:7030082-7030257 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 140
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 32

Conread position: 1-172
Cow position: chrX:7481496-7481671 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 97, 0

Conread position: 1-172
Cow position: chrX:8454645-8454820 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chrX:8670485-8670659 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 94, 147

Conread position: 1-172
Cow position: chrX:9192751-9192576 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chrX:11433594-11433769 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chrX:16363231-16363056 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chrX:18659889-18659715 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 97, 54

Conread position: 1-172
Cow position: chrX:21304633-21304458 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chrX:23047039-23047212 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chrX:39521800-39521975 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chrX:41411128-41410953 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chrX:320361-320536 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 89, 156

Conread position: 1-173
Cow position: chrX:970659-970836 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 1-173
Cow position: chrX:6275725-6275548 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 89, 0

Conread position: 1-173
Cow position: chrX:12669972-12669795 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 22, 0

Conread position: 1-173
Cow position: chrX:13006732-13006556 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 88, 0

Conread position: 1-173
Cow position: chrX:20804019-20804196 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chrX:21289598-21289422 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chrX:21602772-21602948 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chrX:21632694-21632518 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 146
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chrX:24136506-24136336 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 89, 58

Conread position: 1-173
Cow position: chrX:24484519-24484344 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 94, 78

Conread position: 1-173
Cow position: chrX:26628139-26627963 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 143
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chrX:27494601-27494779 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 16, 138

Conread position: 1-173
Cow position: chrX:28603565-28603390 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 94, 148

Conread position: 1-173
Cow position: chrX:29285310-29285485 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 94, 139

Conread position: 1-173
Cow position: chrX:30044252-30044076 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 144
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chrX:32467145-32467321 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 1-173
Cow position: chrX:39719331-39719509 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 94, 75

Conread position: 1-174
Cow position: chrX:2101752-2101933 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chrX:16275570-16275751 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 34

Conread position: 1-174
Cow position: chrX:24275563-24275740 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chrX:29096096-29096270 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 88, 161

Conread position: 1-174
Cow position: chrX:30010932-30011112 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 143
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 0

Conread position: 1-174
Cow position: chrX:37812055-37812236 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 94, 0

Conread position: 1-180
Cow position: chrX:18954629-18954449 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 94, 79

Conread position: 1-183
Cow position: chrX:31191910-31191731 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 126
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 1-192
Cow position: chrX:1546828-1547025 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-193
Cow position: chrX:1833721-1833921 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-193
Cow position: chrX:8586987-8587187 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 1-193
Cow position: chrX:16461570-16461765 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 157
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 160, 95

Conread position: 1-193
Cow position: chrX:28758748-28758546 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 1-193
Cow position: chrX:29872666-29872475 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 96

Conread position: 1-195
Cow position: chrX:26505077-26505278 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 1-196
Cow position: chrX:23041230-23041031 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 1-198
Cow position: chrX:29950680-29950483 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 161, 97

Conread position: 1-202
Cow position: chrX:5299330-5299123 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 1-202
Cow position: chrX:39564038-39563829 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 164
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 94, 203

Conread position: 1-208
Cow position: chrX:35017701-35017917 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 171
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 94, 206

Conread position: 1-209
Cow position: chrX:34988791-34989002 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 96, 163

Conread position: 1-211
Cow position: chrX:2603942-2604159 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 14

Conread position: 1-211
Cow position: chrX:10531665-10531447 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 18

Conread position: 1-211
Cow position: chrX:22525711-22525493 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 94, 203

Conread position: 1-211
Cow position: chrX:27426423-27426209 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 160, 199

Conread position: 1-211
Cow position: chrX:28562321-28562103 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 94, 203

Conread position: 1-211
Cow position: chrX:30173777-30173560 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 97, 54

Conread position: 1-211
Cow position: chrX:31187352-31187135 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 171
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 94, 205

Conread position: 1-211
Cow position: chrX:31493314-31493531 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 93, 148

Conread position: 1-218
Cow position: chrX:22619416-22619191 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 94, 204

Conread position: 1-238
Cow position: chrX:2143173-2143415 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 15, 113

Conread position: 1-239
Cow position: chrX:24139133-24138891 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 78

Conread position: 1-240
Cow position: chrX:30132942-30132701 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 140

Conread position: 1-253
Cow position: chrX:20698402-20698149 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 89, 17

Conread position: 1-262
Cow position: chrX:12973336-12973072 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 139

Conread position: 1-262
Cow position: chrX:28549758-28550024 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 166

Conread position: 1-292
Cow position: chrX:30369124-30368827 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 97, 23

Conread position: 1-293
Cow position: chrX:44386369-44386660 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 94, 141

Conread position: 1-305
Cow position: chrX:35021158-35021464 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 6

Conread position: 1-336
Cow position: chrX:30142501-30142168 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 1-364
Cow position: chrX:31724919-31725293 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 1-569
Cow position: chrX:6283201-6282610 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 169

Conread position: 1-586
Cow position: chrX:2536887-2536301 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 160

Conread position: 2-122
Cow position: chrX:21794989-21795113 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 2-160
Cow position: chrX:22814276-22814438 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 2-210
Cow position: chrX:5840227-5840438 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 96, 16

Conread position: 2-237
Cow position: chrX:29758054-29758286 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 145

Conread position: 2-246
Cow position: chrX:21270302-21270058 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 96, 155

Conread position: 2-265
Cow position: chrX:40247420-40247161 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 92, 77

Conread position: 3-126
Cow position: chrX:3421567-3421441 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 0

Conread position: 3-126
Cow position: chrX:5834069-5833942 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 112
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 0

Conread position: 3-129
Cow position: chrX:5395067-5394937 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 92, 0

Conread position: 3-130
Cow position: chrX:32095071-32094937 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 3-159
Cow position: chrX:14786977-14786817 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 92, 0

Conread position: 3-172
Cow position: chrX:5283840-5283667 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 92, 0

Conread position: 3-173
Cow position: chrX:24122025-24121851 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 140
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 92, 0

Conread position: 3-173
Cow position: chrX:29794219-29794047 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 92, 109

Conread position: 3-173
Cow position: chrX:37142695-37142521 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 92, 0

Conread position: 3-202
Cow position: chrX:28634521-28634314 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 92, 201

Conread position: 3-262
Cow position: chrX:13052527-13052785 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 92, 43

Conread position: 4-172
Cow position: chrX:17478627-17478454 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 17, 0

Conread position: 9-193
Cow position: chrX:23019225-23019415 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 113

Conread position: 11-158
Cow position: chrX:27989876-27989727 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 11-173
Cow position: chrX:30056548-30056714 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 84, 0

Conread position: 18-172
Cow position: chrX:12478631-12478788 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 57

Conread position: 20-172
Cow position: chrX:30055824-30055668 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 75, 0

Conread position: 29-160
Cow position: chrX:41851478-41851343 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 30-173
Cow position: chrX:4795811-4795960 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 31-173
Cow position: chrX:6909424-6909277 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 33-173
Cow position: chrX:30990016-30990162 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 38-557
Cow position: chrX:21587121-21587653 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 288

Conread position: 42-146
Cow position: chrX:14594689-14594797 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 49-264
Cow position: chrX:17668361-17668142 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 97

Conread position: 56-208
Cow position: chrX:3376160-3375999 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 154

Conread position: 122-364
Cow position: chrX:16017107-16016859 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 118, 37

Conread position: 260-581
Cow position: chrX:29758420-29758743 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 220
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 70, 60

Conread position: 260-584
Cow position: chrX:13417589-13417278 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 219
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 100

Conread position: 260-584
Cow position: chrX:17668058-17667750 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 31, 116

Conread position: 278-572
Cow position: chrX:24481205-24480915 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 184
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 7, 63

Conread position: 286-546
Cow position: chrX:22130410-22130141 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 21, 31

Conread position: 287-546
Cow position: chrX:18611208-18611460 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 187
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 87, 21

Conread position: 292-581
Cow position: chrX:34991776-34992052 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 104, 24

Conread position: 295-582
Cow position: chrX:13052895-13053173 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 74, 119

Conread position: 335-584
Cow position: chrX:31081875-31082117 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 178, 23

Conread position: 343-594
Cow position: chrX:44387045-44387282 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 178, 51

Conread position: 345-584
Cow position: chrX:16016763-16016524 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 160, 107

Conread position: 359-572
Cow position: chrX:2143664-2143871 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 169, 38

Conread position: 373-587
Cow position: chrX:30367214-30367008 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 131, 33

Conread position: 374-561
Cow position: chrX:31726053-31726241 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 36, 29

Conread position: 387-594
Cow position: chrX:10417352-10417143 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 56

Show alignments to all cow chromosomes.