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Cow genome map

           
Conread name:
           
Thy1-THY010112C06
        

               
Conread position:
               
163-453
               

               
Cow position:
               
chr11:42083369-42083647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
172-378
               

               
Cow position:
               
chr11:44636846-44636645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 50
               

               
Conread position:
               
184-413
               

               
Cow position:
               
chr11:33409344-33409110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 118
               

               
Conread position:
               
191-350
               

               
Cow position:
               
chr11:43430525-43430375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
191-375
               

               
Cow position:
               
chr11:79019129-79018952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
192-375
               

               
Cow position:
               
chr11:4653045-4652866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
192-412
               

               
Cow position:
               
chr11:49934804-49934591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
192-424
               

               
Cow position:
               
chr11:42066791-42067028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
109, 19
               

               
Conread position:
               
192-424
               

               
Cow position:
               
chr11:63435450-63435686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
171, 28
               

               
Conread position:
               
192-426
               

               
Cow position:
               
chr11:17990308-17990071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
108, 31
               

               
Conread position:
               
192-448
               

               
Cow position:
               
chr11:17493409-17493671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
108, 20
               

               
Conread position:
               
192-448
               

               
Cow position:
               
chr11:84890788-84890542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
192-449
               

               
Cow position:
               
chr11:11125595-11125860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
156, 27
               

               
Conread position:
               
192-449
               

               
Cow position:
               
chr11:41603757-41603510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
236, 28
               

               
Conread position:
               
192-454
               

               
Cow position:
               
chr11:40608664-40608398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
193-453
               

               
Cow position:
               
chr11:75874825-75874579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
194-424
               

               
Cow position:
               
chr11:36647280-36647491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
197-352
               

               
Cow position:
               
chr11:31352621-31352468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
199-361
               

               
Cow position:
               
chr11:30925092-30925247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
199-367
               

               
Cow position:
               
chr11:22499426-22499267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
162, 13
               

               
Conread position:
               
199-449
               

               
Cow position:
               
chr11:66188383-66188126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
20, 99
               

               
Conread position:
               
200-406
               

               
Cow position:
               
chr11:35670012-35669811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
163, 17
               

               
Conread position:
               
200-424
               

               
Cow position:
               
chr11:62742706-62742484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
202-453
               

               
Cow position:
               
chr11:55052809-55053062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
204-383
               

               
Cow position:
               
chr11:64638585-64638412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
204-421
               

               
Cow position:
               
chr11:62813009-62812792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
156, 23
               

               
Conread position:
               
204-424
               

               
Cow position:
               
chr11:15369331-15369553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
204-424
               

               
Cow position:
               
chr11:25119990-25119772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
149, 16
               

               
Conread position:
               
204-424
               

               
Cow position:
               
chr11:55494621-55494828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
204-449
               

               
Cow position:
               
chr11:15958249-15958477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
15, 87
               

               
Conread position:
               
204-455
               

               
Cow position:
               
chr11:7460672-7460428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
146, 19
               

               
Conread position:
               
205-365
               

               
Cow position:
               
chr11:26845653-26845497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
143, 86
               

               
Conread position:
               
207-375
               

               
Cow position:
               
chr11:17831277-17831116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
207-375
               

               
Cow position:
               
chr11:36658875-36658719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
207-377
               

               
Cow position:
               
chr11:63909719-63909558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
207-384
               

               
Cow position:
               
chr11:67312723-67312896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
207-424
               

               
Cow position:
               
chr11:55761811-55762021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
207-426
               

               
Cow position:
               
chr11:78381119-78380903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
208-361
               

               
Cow position:
               
chr11:1362524-1362375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
208-375
               

               
Cow position:
               
chr11:71807625-71807460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr11:38236196-38236409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
162, 9
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr11:38639054-38639263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr11:55744411-55744633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
155, 90
               

               
Conread position:
               
208-449
               

               
Cow position:
               
chr11:70756424-70756663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
208-457
               

               
Cow position:
               
chr11:29960242-29960491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
152, 68
               

               
Conread position:
               
208-468
               

               
Cow position:
               
chr11:77546361-77546609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
200, 9
               

               
Conread position:
               
209-359
               

               
Cow position:
               
chr11:42044048-42043906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 67
               

               
Conread position:
               
209-360
               

               
Cow position:
               
chr11:8147953-8147807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
209-361
               

               
Cow position:
               
chr11:42359058-42359212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
209-375
               

               
Cow position:
               
chr11:21507947-21508115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
148, 89
               

               
Conread position:
               
209-377
               

               
Cow position:
               
chr11:83579232-83579068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
209-401
               

               
Cow position:
               
chr11:34113209-34113404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
209-405
               

               
Cow position:
               
chr11:20602168-20602363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
209-406
               

               
Cow position:
               
chr11:36112371-36112564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
154, 14
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr11:18572747-18572947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr11:70206266-70206479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
209-429
               

               
Cow position:
               
chr11:46746577-46746805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
126, 11
               

               
Conread position:
               
209-438
               

               
Cow position:
               
chr11:82940670-82940447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
160, 10
               

               
Conread position:
               
209-443
               

               
Cow position:
               
chr11:30355004-30355228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
209-447
               

               
Cow position:
               
chr11:53778561-53778807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
155, 91
               

               
Conread position:
               
209-452
               

               
Cow position:
               
chr11:30830670-30830426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 89
               

               
Conread position:
               
209-453
               

               
Cow position:
               
chr11:41549386-41549139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
152, 8
               

               
Conread position:
               
209-454
               

               
Cow position:
               
chr11:16314816-16315075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
209-464
               

               
Cow position:
               
chr11:30370053-30370310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 61
               

               
Conread position:
               
209-467
               

               
Cow position:
               
chr11:62620320-62620582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 90
               

               
Conread position:
               
209-470
               

               
Cow position:
               
chr11:2084087-2084361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
210-352
               

               
Cow position:
               
chr11:21438156-21438292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
210-359
               

               
Cow position:
               
chr11:23586583-23586729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
210-360
               

               
Cow position:
               
chr11:36986896-36987041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
210-361
               

               
Cow position:
               
chr11:64868074-64867928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
210-366
               

               
Cow position:
               
chr11:377697-377544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
18, 12
               

               
Conread position:
               
210-367
               

               
Cow position:
               
chr11:16907102-16906953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
210-367
               

               
Cow position:
               
chr11:36799361-36799210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
210-368
               

               
Cow position:
               
chr11:249537-249382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr11:6202387-6202547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr11:32398584-32398738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
210-374
               

               
Cow position:
               
chr11:23232574-23232414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
210-374
               

               
Cow position:
               
chr11:35684555-35684396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
210-374
               

               
Cow position:
               
chr11:48649919-48650078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
210-374
               

               
Cow position:
               
chr11:83230455-83230295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
6, 54
               

               
Conread position:
               
210-375
               

               
Cow position:
               
chr11:54334274-54334435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
210-375
               

               
Cow position:
               
chr11:69307458-69307620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
210-384
               

               
Cow position:
               
chr11:33310919-33311095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
210-393
               

               
Cow position:
               
chr11:62754372-62754194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
210-411
               

               
Cow position:
               
chr11:8988286-8988085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
8, 90
               

               
Conread position:
               
210-413
               

               
Cow position:
               
chr11:70978790-70978586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
210-414
               

               
Cow position:
               
chr11:34136190-34136395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
144, 12
               

               
Conread position:
               
210-416
               

               
Cow position:
               
chr11:22977930-22977721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
210-422
               

               
Cow position:
               
chr11:64048346-64048552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
210-423
               

               
Cow position:
               
chr11:7874085-7874303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
142, 17
               

               
Conread position:
               
210-423
               

               
Cow position:
               
chr11:19247252-19247042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
150, 10
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr11:14470316-14470525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
153, 33
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr11:39855069-39854858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
5, 68
               

               
Conread position:
               
210-426
               

               
Cow position:
               
chr11:39060660-39060439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
210-429
               

               
Cow position:
               
chr11:36920632-36920405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 88
               

               
Conread position:
               
210-438
               

               
Cow position:
               
chr11:13040226-13040004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
214, 90
               

               
Conread position:
               
210-444
               

               
Cow position:
               
chr11:50472264-50472502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
153, 7
               

               
Conread position:
               
210-448
               

               
Cow position:
               
chr11:67600730-67600966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
144, 93
               

               
Conread position:
               
210-449
               

               
Cow position:
               
chr11:47837265-47837514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
210-454
               

               
Cow position:
               
chr11:33348242-33347999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
210-455
               

               
Cow position:
               
chr11:35536534-35536776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
151, 12
               

               
Conread position:
               
210-455
               

               
Cow position:
               
chr11:52690574-52690323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
151, 77
               

               
Conread position:
               
210-456
               

               
Cow position:
               
chr11:63434115-63433870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
6, 83
               

               
Conread position:
               
210-463
               

               
Cow position:
               
chr11:67804693-67804944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
210-465
               

               
Cow position:
               
chr11:39462569-39462820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
151, 90
               

               
Conread position:
               
210-507
               

               
Cow position:
               
chr11:71492914-71492613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
151, 61
               

               
Conread position:
               
211-372
               

               
Cow position:
               
chr11:6633658-6633814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
211-375
               

               
Cow position:
               
chr11:61958797-61958636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
154, 86
               

               
Conread position:
               
211-413
               

               
Cow position:
               
chr11:69977918-69978121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
159, 16
               

               
Conread position:
               
211-418
               

               
Cow position:
               
chr11:37436040-37435829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
211-422
               

               
Cow position:
               
chr11:43360829-43360625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
211-438
               

               
Cow position:
               
chr11:34644603-34644837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 9
               

               
Conread position:
               
211-448
               

               
Cow position:
               
chr11:41125-41365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
150, 49
               

               
Conread position:
               
212-353
               

               
Cow position:
               
chr11:34106722-34106586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
212-361
               

               
Cow position:
               
chr11:73512493-73512351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
212-363
               

               
Cow position:
               
chr11:31885661-31885817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
8, 95
               

               
Conread position:
               
212-369
               

               
Cow position:
               
chr11:76606619-76606773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
212-375
               

               
Cow position:
               
chr11:62778391-62778550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
212-377
               

               
Cow position:
               
chr11:27932222-27932395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 136
               

               
Conread position:
               
212-414
               

               
Cow position:
               
chr11:68206896-68206692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
149, 35
               

               
Conread position:
               
212-422
               

               
Cow position:
               
chr11:259225-259014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
212-422
               

               
Cow position:
               
chr11:4637224-4637013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
138, 85
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr11:20205904-20205694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 85
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr11:21844184-21843975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
142, 41
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr11:41986101-41985884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr11:70483902-70483687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 8
               

               
Conread position:
               
212-444
               

               
Cow position:
               
chr11:19946384-19946611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
133, 8
               

               
Conread position:
               
212-449
               

               
Cow position:
               
chr11:17889783-17889538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
120, 85
               

               
Conread position:
               
213-365
               

               
Cow position:
               
chr11:48512113-48512260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
213-367
               

               
Cow position:
               
chr11:81762811-81762965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 49
               

               
Conread position:
               
213-369
               

               
Cow position:
               
chr11:77128609-77128761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
213-375
               

               
Cow position:
               
chr11:83033286-83033133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
213-418
               

               
Cow position:
               
chr11:58927532-58927731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
69, 79
               

               
Conread position:
               
213-423
               

               
Cow position:
               
chr11:48295981-48296188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
213-424
               

               
Cow position:
               
chr11:41313707-41313498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
149, 6
               

               
Conread position:
               
213-424
               

               
Cow position:
               
chr11:73354111-73353903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
161, 83
               

               
Conread position:
               
213-438
               

               
Cow position:
               
chr11:67912201-67911981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
213, 14
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chr11:27913233-27913495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
147, 83
               

               
Conread position:
               
214-350
               

               
Cow position:
               
chr11:52983626-52983757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
214-372
               

               
Cow position:
               
chr11:32436285-32436436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
214-375
               

               
Cow position:
               
chr11:34692802-34692962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
214-375
               

               
Cow position:
               
chr11:82731047-82730891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
214-377
               

               
Cow position:
               
chr11:3234025-3234184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
214-423
               

               
Cow position:
               
chr11:18698828-18699033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chr11:17721852-17721637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
146, 84
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chr11:42296670-42296463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
157, 84
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chr11:49148989-49149210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 89
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chr11:58588296-58588491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
176, 86
               

               
Conread position:
               
214-447
               

               
Cow position:
               
chr11:29659509-29659746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
154, 83
               

               
Conread position:
               
215-345
               

               
Cow position:
               
chr11:71482331-71482456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
215-360
               

               
Cow position:
               
chr11:33527002-33527144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
215-368
               

               
Cow position:
               
chr11:50072888-50073037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
215-406
               

               
Cow position:
               
chr11:16320237-16320416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
215-409
               

               
Cow position:
               
chr11:39249923-39250115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
146, 82
               

               
Conread position:
               
215-417
               

               
Cow position:
               
chr11:27565284-27565476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
215-417
               

               
Cow position:
               
chr11:65826800-65826594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
146, 81
               

               
Conread position:
               
215-438
               

               
Cow position:
               
chr11:31875044-31875273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
138, 7
               

               
Conread position:
               
215-449
               

               
Cow position:
               
chr11:6194357-6194582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
211, 28
               

               
Conread position:
               
215-453
               

               
Cow position:
               
chr11:13499969-13500210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
149, 5
               

               
Conread position:
               
216-359
               

               
Cow position:
               
chr11:41809541-41809402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
216-361
               

               
Cow position:
               
chr11:61130713-61130574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
216-374
               

               
Cow position:
               
chr11:7307584-7307740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
137, 6
               

               
Conread position:
               
216-405
               

               
Cow position:
               
chr11:84977407-84977220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
112, 81
               

               
Conread position:
               
216-413
               

               
Cow position:
               
chr11:48659886-48660083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
145, 85
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chr11:25791742-25791529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 41
               

               
Conread position:
               
216-459
               

               
Cow position:
               
chr11:897625-897869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
144, 81
               

               
Conread position:
               
217-360
               

               
Cow position:
               
chr11:46952900-46953039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
217-361
               

               
Cow position:
               
chr11:61454560-61454424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
217-372
               

               
Cow position:
               
chr11:53147579-53147428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
86, 10
               

               
Conread position:
               
217-374
               

               
Cow position:
               
chr11:71341512-71341359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
217-376
               

               
Cow position:
               
chr11:21910674-21910520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
217-380
               

               
Cow position:
               
chr11:4207264-4207420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
217-382
               

               
Cow position:
               
chr11:40478900-40478739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chr11:23407417-23407624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 79
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chr11:38334476-38334685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
143, 80
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chr11:49152903-49153104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chr11:83043410-83043203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
141, 81
               

               
Conread position:
               
217-428
               

               
Cow position:
               
chr11:62663279-62663074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
148, 59
               

               
Conread position:
               
217-444
               

               
Cow position:
               
chr11:6233927-6233688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
145, 80
               

               
Conread position:
               
217-449
               

               
Cow position:
               
chr11:26144143-26143904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
18, 6
               

               
Conread position:
               
217-454
               

               
Cow position:
               
chr11:30638997-30638757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
144, 81
               

               
Conread position:
               
218-370
               

               
Cow position:
               
chr11:17278718-17278574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
218-375
               

               
Cow position:
               
chr11:56290465-56290618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
218-424
               

               
Cow position:
               
chr11:31506803-31506992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
219-372
               

               
Cow position:
               
chr11:48063846-48063697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
219-424
               

               
Cow position:
               
chr11:13043191-13042984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
142, 78
               

               
Conread position:
               
220-374
               

               
Cow position:
               
chr11:17321603-17321754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
98, 77
               

               
Conread position:
               
220-375
               

               
Cow position:
               
chr11:71501176-71501025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 77
               

               
Conread position:
               
220-377
               

               
Cow position:
               
chr11:48474659-48474812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
220-381
               

               
Cow position:
               
chr11:18587640-18587483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
220-413
               

               
Cow position:
               
chr11:84385681-84385484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chr11:4199227-4199438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
141, 69
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chr11:10095300-10095507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
140, 7
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chr11:27449655-27449468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chr11:30172265-30172463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
148, 59
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chr11:51729242-51729438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chr11:62889938-62889728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
141, 77
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chr11:83032636-83032841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
134, 77
               

               
Conread position:
               
220-427
               

               
Cow position:
               
chr11:35109584-35109369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
220-446
               

               
Cow position:
               
chr11:30210865-30211077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
220-449
               

               
Cow position:
               
chr11:33345401-33345620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
220-455
               

               
Cow position:
               
chr11:15772756-15772518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
140, 53
               

               
Conread position:
               
220-462
               

               
Cow position:
               
chr11:27462142-27461909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
220-465
               

               
Cow position:
               
chr11:77013740-77013974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
216, 57
               

               
Conread position:
               
221-456
               

               
Cow position:
               
chr11:28078460-28078687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
142, 62
               

               
Conread position:
               
222-377
               

               
Cow position:
               
chr11:58173583-58173733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
222-447
               

               
Cow position:
               
chr11:84763996-84764209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
193, 18
               

               
Conread position:
               
224-351
               

               
Cow position:
               
chr11:18608278-18608155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr11:53717847-53717703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
224-454
               

               
Cow position:
               
chr11:1980309-1980071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
225-423
               

               
Cow position:
               
chr11:17227681-17227488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
140, 53
               

               
Conread position:
               
226-372
               

               
Cow position:
               
chr11:15373800-15373943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
54, 72
               

               
Conread position:
               
226-375
               

               
Cow position:
               
chr11:56654517-56654662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
226-384
               

               
Cow position:
               
chr11:71110853-71111005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
226-442
               

               
Cow position:
               
chr11:34467533-34467747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
139, 17
               

               
Conread position:
               
226-448
               

               
Cow position:
               
chr11:40459069-40459298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
99, 71
               

               
Conread position:
               
226-457
               

               
Cow position:
               
chr11:65607730-65607494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
227-361
               

               
Cow position:
               
chr11:29946951-29946821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
227-375
               

               
Cow position:
               
chr11:56575801-56575654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
142, 117
               

               
Conread position:
               
227-423
               

               
Cow position:
               
chr11:29786536-29786330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
133, 69
               

               
Conread position:
               
227-445
               

               
Cow position:
               
chr11:9270762-9270547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
134, 44
               

               
Conread position:
               
228-386
               

               
Cow position:
               
chr11:58938781-58938627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
228-438
               

               
Cow position:
               
chr11:46427444-46427223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 73
               

               
Conread position:
               
230-377
               

               
Cow position:
               
chr11:62609570-62609713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
231-424
               

               
Cow position:
               
chr11:62789097-62789291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
232-408
               

               
Cow position:
               
chr11:9698870-9699037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
233-424
               

               
Cow position:
               
chr11:64408945-64409130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
130, 44
               

               
Conread position:
               
233-448
               

               
Cow position:
               
chr11:18509062-18508841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
130, 65
               

               
Conread position:
               
233-454
               

               
Cow position:
               
chr11:63382222-63382004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
133, 67
               

               
Conread position:
               
234-424
               

               
Cow position:
               
chr11:41215702-41215897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 63
               

               
Conread position:
               
235-463
               

               
Cow position:
               
chr11:43914262-43914498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 62
               

               
Conread position:
               
236-424
               

               
Cow position:
               
chr11:30843047-30842861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
118, 61
               

               
Conread position:
               
236-453
               

               
Cow position:
               
chr11:30867155-30867372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
237-361
               

               
Cow position:
               
chr11:42056079-42056199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
237-448
               

               
Cow position:
               
chr11:77745279-77745058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 59
               

               
Conread position:
               
239-457
               

               
Cow position:
               
chr11:78820126-78820348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
124, 54
               

               
Conread position:
               
243-413
               

               
Cow position:
               
chr11:18792089-18791910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
119, 53
               

               
Conread position:
               
244-421
               

               
Cow position:
               
chr11:74378854-74379029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
140, 50
               

               
Conread position:
               
244-438
               

               
Cow position:
               
chr11:33368062-33368254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
175, 54
               

               
Conread position:
               
245-448
               

               
Cow position:
               
chr11:80586254-80586459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
5, 54
               

               
Conread position:
               
246-375
               

               
Cow position:
               
chr11:15682998-15682875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
246-375
               

               
Cow position:
               
chr11:30475974-30476105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
246-375
               

               
Cow position:
               
chr11:84775056-84775180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
246-424
               

               
Cow position:
               
chr11:28993756-28993584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
246-438
               

               
Cow position:
               
chr11:49207693-49207889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
116, 8
               

               
Conread position:
               
246-449
               

               
Cow position:
               
chr11:31227944-31228147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
246-453
               

               
Cow position:
               
chr11:38211627-38211836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
115, 50
               

               
Conread position:
               
246-466
               

               
Cow position:
               
chr11:3797699-3797913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
201, 51
               

               
Conread position:
               
247-457
               

               
Cow position:
               
chr11:36092934-36092720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
117, 49
               

               
Conread position:
               
248-424
               

               
Cow position:
               
chr11:9699261-9699091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
248-424
               

               
Cow position:
               
chr11:21830226-21830047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
112, 50
               

               
Conread position:
               
248-469
               

               
Cow position:
               
chr11:18189752-18189545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
249-424
               

               
Cow position:
               
chr11:87172092-87171912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
249-455
               

               
Cow position:
               
chr11:33993149-33993349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
249-468
               

               
Cow position:
               
chr11:15366988-15366774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
112, 47
               

               
Conread position:
               
251-450
               

               
Cow position:
               
chr11:48900858-48900664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
175, 52
               

               
Conread position:
               
252-420
               

               
Cow position:
               
chr11:86895364-86895532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 45
               

               
Conread position:
               
252-422
               

               
Cow position:
               
chr11:49396538-49396364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
105, 46
               

               
Conread position:
               
252-426
               

               
Cow position:
               
chr11:79707701-79707869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
117, 46
               

               
Conread position:
               
252-465
               

               
Cow position:
               
chr11:77017229-77017436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
176, 47
               

               
Conread position:
               
258-424
               

               
Cow position:
               
chr11:7571618-7571784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 39
               

               
Conread position:
               
258-424
               

               
Cow position:
               
chr11:27661409-27661563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
258-424
               

               
Cow position:
               
chr11:63484932-63485096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
103, 5
               

               
Conread position:
               
258-427
               

               
Cow position:
               
chr11:45671376-45671213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
258-452
               

               
Cow position:
               
chr11:19579022-19578829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
258-452
               

               
Cow position:
               
chr11:46784468-46784655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
259-424
               

               
Cow position:
               
chr11:21173443-21173273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
104, 39
               

               
Conread position:
               
259-424
               

               
Cow position:
               
chr11:66104401-66104229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
259-460
               

               
Cow position:
               
chr11:66685911-66685702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 39
               

               
Conread position:
               
260-422
               

               
Cow position:
               
chr11:60720460-60720292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
103, 38
               

               
Conread position:
               
260-422
               

               
Cow position:
               
chr11:81406173-81406005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
94, 38
               

               
Conread position:
               
260-424
               

               
Cow position:
               
chr11:63499131-63498967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 29
               

               
Conread position:
               
260-463
               

               
Cow position:
               
chr11:1485231-1485033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
260-467
               

               
Cow position:
               
chr11:57767186-57767393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
261-424
               

               
Cow position:
               
chr11:64023103-64022946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 35
               

               
Conread position:
               
262-449
               

               
Cow position:
               
chr11:66041276-66041461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
263-443
               

               
Cow position:
               
chr11:26535786-26535968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
263-453
               

               
Cow position:
               
chr11:46499009-46499190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 35
               

               
Conread position:
               
263-454
               

               
Cow position:
               
chr11:77241704-77241895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
264-375
               

               
Cow position:
               
chr11:36066009-36065899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
264-424
               

               
Cow position:
               
chr11:58185882-58186036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
265-426
               

               
Cow position:
               
chr11:30654656-30654814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
104, 33
               

               
Conread position:
               
266-455
               

               
Cow position:
               
chr11:40538552-40538744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 39
               

               
Conread position:
               
271-457
               

               
Cow position:
               
chr11:19148130-19147944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
286-424
               

               
Cow position:
               
chr11:2310093-2310231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
287-449
               

               
Cow position:
               
chr11:57170578-57170421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
295-424
               

               
Cow position:
               
chr11:75915021-75915150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 5
               

               
Conread position:
               
300-485
               

               
Cow position:
               
chr11:2937632-2937443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
302-406
               

               
Cow position:
               
chr11:18210140-18210037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
303-452
               

               
Cow position:
               
chr11:18484154-18484003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
304-424
               

               
Cow position:
               
chr11:86925925-86925799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 52
               

               
Conread position:
               
304-454
               

               
Cow position:
               
chr11:82733114-82732958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
307-424
               

               
Cow position:
               
chr11:3267617-3267504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
329-457
               

               
Cow position:
               
chr11:31525591-31525454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 123
               
Show alignments to all cow chromosomes.