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Cow genome map

           
Conread name:
           
Thy1-THY010112C06
        

               
Conread position:
               
162-423
               

               
Cow position:
               
chr12:34332992-34333257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
167, 12
               

               
Conread position:
               
179-423
               

               
Cow position:
               
chr12:40158129-40157887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
189-452
               

               
Cow position:
               
chr12:9129816-9130078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
171, 13
               

               
Conread position:
               
191-372
               

               
Cow position:
               
chr12:7977946-7978120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
192-424
               

               
Cow position:
               
chr12:27563467-27563237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
169, 31
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr12:34466095-34465847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
193-396
               

               
Cow position:
               
chr12:22540117-22540311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
194-422
               

               
Cow position:
               
chr12:44542172-44542403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
195-422
               

               
Cow position:
               
chr12:33948816-33949040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
166, 35
               

               
Conread position:
               
196-420
               

               
Cow position:
               
chr12:8859085-8859309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
199-361
               

               
Cow position:
               
chr12:15699992-15700152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
199-432
               

               
Cow position:
               
chr12:37514364-37514136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
154, 24
               

               
Conread position:
               
199-447
               

               
Cow position:
               
chr12:6241231-6241493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 100
               

               
Conread position:
               
199-449
               

               
Cow position:
               
chr12:25027853-25027587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 150
               

               
Conread position:
               
201-453
               

               
Cow position:
               
chr12:4719863-4720122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
162, 102
               

               
Conread position:
               
202-454
               

               
Cow position:
               
chr12:23836248-23836507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
158, 62
               

               
Conread position:
               
203-372
               

               
Cow position:
               
chr12:29779996-29779831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
204-424
               

               
Cow position:
               
chr12:24273439-24273230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
204-424
               

               
Cow position:
               
chr12:30194631-30194835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
204-424
               

               
Cow position:
               
chr12:30210403-30210612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
204-424
               

               
Cow position:
               
chr12:33851280-33851498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
157, 71
               

               
Conread position:
               
205-353
               

               
Cow position:
               
chr12:25110518-25110377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
206-457
               

               
Cow position:
               
chr12:12300836-12301102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
207-364
               

               
Cow position:
               
chr12:23855760-23855907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
16, 75
               

               
Conread position:
               
207-420
               

               
Cow position:
               
chr12:22515809-22515600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
158, 10
               

               
Conread position:
               
207-426
               

               
Cow position:
               
chr12:1333152-1333361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
207-453
               

               
Cow position:
               
chr12:24032418-24032662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
141, 90
               

               
Conread position:
               
208-384
               

               
Cow position:
               
chr12:7920166-7920337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
208-411
               

               
Cow position:
               
chr12:30662025-30661820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 18
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr12:17879381-17879163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr12:47267389-47267166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
208-465
               

               
Cow position:
               
chr12:1889654-1889390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
143, 35
               

               
Conread position:
               
209-364
               

               
Cow position:
               
chr12:4135002-4135152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
209-375
               

               
Cow position:
               
chr12:7000679-7000519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
209-376
               

               
Cow position:
               
chr12:15173749-15173914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
152, 11
               

               
Conread position:
               
209-380
               

               
Cow position:
               
chr12:25452522-25452360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
209-384
               

               
Cow position:
               
chr12:3880056-3879887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
209-389
               

               
Cow position:
               
chr12:3197195-3197371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
164, 8
               

               
Conread position:
               
209-393
               

               
Cow position:
               
chr12:6210232-6210055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
209-412
               

               
Cow position:
               
chr12:19258205-19258409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
209-416
               

               
Cow position:
               
chr12:11056799-11057005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
103, 89
               

               
Conread position:
               
209-423
               

               
Cow position:
               
chr12:6687817-6688025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
152, 82
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr12:4954753-4954963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
154, 23
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr12:9914714-9914923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr12:12637260-12637043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr12:23939148-23939361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
110, 10
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr12:26217900-26217685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr12:29675214-29674997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 35
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr12:43974216-43974434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
209-426
               

               
Cow position:
               
chr12:17881786-17881999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
145, 11
               

               
Conread position:
               
209-427
               

               
Cow position:
               
chr12:4866739-4866959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
209-452
               

               
Cow position:
               
chr12:30805779-30806025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
209-466
               

               
Cow position:
               
chr12:11836156-11836422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
19, 89
               

               
Conread position:
               
210-351
               

               
Cow position:
               
chr12:22881981-22882118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
210-361
               

               
Cow position:
               
chr12:18766046-18765901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr12:28213435-28213592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
210-374
               

               
Cow position:
               
chr12:17774721-17774881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
144, 12
               

               
Conread position:
               
210-375
               

               
Cow position:
               
chr12:4341820-4341658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr12:3615927-3616125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr12:5635529-5635310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 89
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr12:10942212-10942436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
153, 86
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr12:42285896-42286106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
158, 10
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr12:48415588-48415378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
5, 48
               

               
Conread position:
               
210-426
               

               
Cow position:
               
chr12:21780084-21780308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
8, 90
               

               
Conread position:
               
210-426
               

               
Cow position:
               
chr12:31517246-31517039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
210-449
               

               
Cow position:
               
chr12:36790888-36790647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
210-451
               

               
Cow position:
               
chr12:5714555-5714789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
224, 87
               

               
Conread position:
               
210-452
               

               
Cow position:
               
chr12:11587699-11587939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
151, 87
               

               
Conread position:
               
210-454
               

               
Cow position:
               
chr12:30590687-30590944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
210-454
               

               
Cow position:
               
chr12:40910364-40910108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
97, 93
               

               
Conread position:
               
210-457
               

               
Cow position:
               
chr12:20479409-20479165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
210-465
               

               
Cow position:
               
chr12:18103684-18103432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
168, 47
               

               
Conread position:
               
210-467
               

               
Cow position:
               
chr12:35368568-35368833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
168, 10
               

               
Conread position:
               
211-352
               

               
Cow position:
               
chr12:15641182-15641044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 86
               

               
Conread position:
               
211-361
               

               
Cow position:
               
chr12:4793124-4793269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
211-369
               

               
Cow position:
               
chr12:29969505-29969659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
211-411
               

               
Cow position:
               
chr12:33323569-33323365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
211-422
               

               
Cow position:
               
chr12:26575820-26576032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
7, 84
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chr12:18518600-18518814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
143, 16
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chr12:25805205-25805003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chr12:31429642-31429450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chr12:37008778-37008568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
211-433
               

               
Cow position:
               
chr12:24023876-24023660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
211-438
               

               
Cow position:
               
chr12:19715112-19714899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
211-443
               

               
Cow position:
               
chr12:4594427-4594666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
105, 86
               

               
Conread position:
               
211-455
               

               
Cow position:
               
chr12:25561296-25561545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 78
               

               
Conread position:
               
212-377
               

               
Cow position:
               
chr12:30753647-30753807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
212-417
               

               
Cow position:
               
chr12:31532471-31532271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
153, 8
               

               
Conread position:
               
212-423
               

               
Cow position:
               
chr12:7902878-7902664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
54, 91
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr12:4768850-4769061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr12:14222909-14223125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
149, 31
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr12:29057316-29057532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
148, 85
               

               
Conread position:
               
212-442
               

               
Cow position:
               
chr12:15122251-15122488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 88
               

               
Conread position:
               
212-467
               

               
Cow position:
               
chr12:13911654-13911383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
107, 87
               

               
Conread position:
               
213-375
               

               
Cow position:
               
chr12:30919352-30919511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
213-397
               

               
Cow position:
               
chr12:41474018-41474197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
213-406
               

               
Cow position:
               
chr12:41159518-41159714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
148, 73
               

               
Conread position:
               
213-424
               

               
Cow position:
               
chr12:24181078-24181285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
148, 7
               

               
Conread position:
               
213-426
               

               
Cow position:
               
chr12:42181200-42180984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
148, 7
               

               
Conread position:
               
213-453
               

               
Cow position:
               
chr12:26750025-26749774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
213-454
               

               
Cow position:
               
chr12:4162435-4162201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 157
               

               
Conread position:
               
213-464
               

               
Cow position:
               
chr12:38774313-38774058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
139, 21
               

               
Conread position:
               
214-350
               

               
Cow position:
               
chr12:18943729-18943597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
214-352
               

               
Cow position:
               
chr12:18963998-18963865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
214-376
               

               
Cow position:
               
chr12:44517808-44517651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
214-384
               

               
Cow position:
               
chr12:2711425-2711592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 59
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chr12:35771091-35770882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
179, 6
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chr12:18123600-18123808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
147, 82
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chr12:25280571-25280361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
141, 84
               

               
Conread position:
               
216-466
               

               
Cow position:
               
chr12:29966038-29966291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
145, 41
               

               
Conread position:
               
217-361
               

               
Cow position:
               
chr12:45168087-45167948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
217-363
               

               
Cow position:
               
chr12:5940272-5940415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 82
               

               
Conread position:
               
217-368
               

               
Cow position:
               
chr12:18523496-18523648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
217-377
               

               
Cow position:
               
chr12:37993800-37993644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
217-397
               

               
Cow position:
               
chr12:7299530-7299346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
217-422
               

               
Cow position:
               
chr12:3623626-3623831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
144, 83
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chr12:40881978-40881781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
217-426
               

               
Cow position:
               
chr12:45069455-45069240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
100, 80
               

               
Conread position:
               
217-427
               

               
Cow position:
               
chr12:23574695-23574915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
144, 79
               

               
Conread position:
               
217-438
               

               
Cow position:
               
chr12:17269734-17269959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
148, 81
               

               
Conread position:
               
217-449
               

               
Cow position:
               
chr12:42749372-42749610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
106, 61
               

               
Conread position:
               
217-454
               

               
Cow position:
               
chr12:31948047-31948289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
117, 86
               

               
Conread position:
               
219-424
               

               
Cow position:
               
chr12:45092380-45092582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
153, 81
               

               
Conread position:
               
220-361
               

               
Cow position:
               
chr12:8943288-8943152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
220-368
               

               
Cow position:
               
chr12:36994181-36994037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
220-375
               

               
Cow position:
               
chr12:4797235-4797387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
145, 77
               

               
Conread position:
               
220-378
               

               
Cow position:
               
chr12:44595875-44595721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
141, 77
               

               
Conread position:
               
220-416
               

               
Cow position:
               
chr12:39663267-39663075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 80
               

               
Conread position:
               
220-437
               

               
Cow position:
               
chr12:6754131-6754345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
145, 77
               

               
Conread position:
               
220-454
               

               
Cow position:
               
chr12:42966935-42967167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
141, 54
               

               
Conread position:
               
221-424
               

               
Cow position:
               
chr12:6410799-6410594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
140, 76
               

               
Conread position:
               
221-424
               

               
Cow position:
               
chr12:26147235-26147026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
221-426
               

               
Cow position:
               
chr12:24167008-24166805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
152, 75
               

               
Conread position:
               
221-448
               

               
Cow position:
               
chr12:34161350-34161575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
170, 39
               

               
Conread position:
               
222-361
               

               
Cow position:
               
chr12:7311316-7311453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
5, 76
               

               
Conread position:
               
223-426
               

               
Cow position:
               
chr12:1701867-1701670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
224-361
               

               
Cow position:
               
chr12:22894110-22894241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
226-375
               

               
Cow position:
               
chr12:45014620-45014767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
129, 63
               

               
Conread position:
               
226-426
               

               
Cow position:
               
chr12:15389012-15389214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 72
               

               
Conread position:
               
226-426
               

               
Cow position:
               
chr12:45002126-45001927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
156, 71
               

               
Conread position:
               
226-445
               

               
Cow position:
               
chr12:33976140-33976371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
134, 72
               

               
Conread position:
               
226-449
               

               
Cow position:
               
chr12:9229559-9229348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
205, 72
               

               
Conread position:
               
226-449
               

               
Cow position:
               
chr12:21922392-21922606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
226-459
               

               
Cow position:
               
chr12:23916787-23917023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
135, 49
               

               
Conread position:
               
227-426
               

               
Cow position:
               
chr12:42282897-42282695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
139, 73
               

               
Conread position:
               
227-455
               

               
Cow position:
               
chr12:27803108-27802879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
199, 73
               

               
Conread position:
               
227-465
               

               
Cow position:
               
chr12:7110139-7110392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
134, 70
               

               
Conread position:
               
230-457
               

               
Cow position:
               
chr12:35469502-35469270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 73
               

               
Conread position:
               
236-424
               

               
Cow position:
               
chr12:36261640-36261836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
238-424
               

               
Cow position:
               
chr12:43854847-43855032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
123, 44
               

               
Conread position:
               
239-424
               

               
Cow position:
               
chr12:23105891-23106081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 57
               

               
Conread position:
               
246-360
               

               
Cow position:
               
chr12:47929162-47929271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
246-368
               

               
Cow position:
               
chr12:27572279-27572162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
246-384
               

               
Cow position:
               
chr12:42143121-42143254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
246-418
               

               
Cow position:
               
chr12:24146592-24146771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
112, 54
               

               
Conread position:
               
246-424
               

               
Cow position:
               
chr12:48578804-48578977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
246-448
               

               
Cow position:
               
chr12:14986710-14986913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
125, 52
               

               
Conread position:
               
246-449
               

               
Cow position:
               
chr12:19697357-19697566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
246-460
               

               
Cow position:
               
chr12:3586079-3586291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
119, 54
               

               
Conread position:
               
247-444
               

               
Cow position:
               
chr12:44822258-44822447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
181, 42
               

               
Conread position:
               
248-472
               

               
Cow position:
               
chr12:39150089-39149852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
107, 50
               

               
Conread position:
               
249-406
               

               
Cow position:
               
chr12:22859431-22859583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
112, 34
               

               
Conread position:
               
250-375
               

               
Cow position:
               
chr12:27430471-27430593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
119, 48
               

               
Conread position:
               
250-375
               

               
Cow position:
               
chr12:30226968-30226848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
250-424
               

               
Cow position:
               
chr12:29731279-29731453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
113, 48
               

               
Conread position:
               
252-424
               

               
Cow position:
               
chr12:24397196-24397023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
109, 51
               

               
Conread position:
               
252-424
               

               
Cow position:
               
chr12:31841536-31841712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
119, 45
               

               
Conread position:
               
252-467
               

               
Cow position:
               
chr12:17250482-17250689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
118, 25
               

               
Conread position:
               
253-429
               

               
Cow position:
               
chr12:41221041-41220866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
112, 45
               

               
Conread position:
               
257-423
               

               
Cow position:
               
chr12:6666546-6666702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
257-424
               

               
Cow position:
               
chr12:6958191-6958361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
98, 41
               

               
Conread position:
               
258-458
               

               
Cow position:
               
chr12:24639608-24639805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
119, 45
               

               
Conread position:
               
259-446
               

               
Cow position:
               
chr12:38804616-38804438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
259-454
               

               
Cow position:
               
chr12:6480614-6480814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
259-458
               

               
Cow position:
               
chr12:17273539-17273747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
260-429
               

               
Cow position:
               
chr12:35663938-35664104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
260-454
               

               
Cow position:
               
chr12:14987770-14987974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
261-424
               

               
Cow position:
               
chr12:45782202-45782365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
102, 37
               

               
Conread position:
               
263-424
               

               
Cow position:
               
chr12:17108131-17108296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
264-413
               

               
Cow position:
               
chr12:43582981-43583129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
265-453
               

               
Cow position:
               
chr12:17702047-17701862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
268-424
               

               
Cow position:
               
chr12:18130500-18130653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 18
               

               
Conread position:
               
279-404
               

               
Cow position:
               
chr12:24391313-24391434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
293-424
               

               
Cow position:
               
chr12:44892211-44892351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
295-423
               

               
Cow position:
               
chr12:45023770-45023640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
303-427
               

               
Cow position:
               
chr12:17744850-17744719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               
Show alignments to all cow chromosomes.