• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Thy1-THY010112C06
        

               
Conread position:
               
147-454
               

               
Cow position:
               
chr21:18135904-18135617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
285, 33
               

               
Conread position:
               
175-369
               

               
Cow position:
               
chr21:13365336-13365524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
185-371
               

               
Cow position:
               
chr21:5153623-5153804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
189-454
               

               
Cow position:
               
chr21:44214135-44214385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
190-375
               

               
Cow position:
               
chr21:41610180-41610358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
134, 20
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr21:42007449-42007275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
192-423
               

               
Cow position:
               
chr21:10410234-10410466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
192-424
               

               
Cow position:
               
chr21:8206782-8207001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
192-424
               

               
Cow position:
               
chr21:28244483-28244711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
169, 31
               

               
Conread position:
               
194-422
               

               
Cow position:
               
chr21:41918230-41917997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
195-361
               

               
Cow position:
               
chr21:10118575-10118740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
111, 21
               

               
Conread position:
               
195-436
               

               
Cow position:
               
chr21:41579768-41580009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
166, 102
               

               
Conread position:
               
199-424
               

               
Cow position:
               
chr21:17193731-17193504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
164, 5
               

               
Conread position:
               
199-426
               

               
Cow position:
               
chr21:4399825-4400039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
201-375
               

               
Cow position:
               
chr21:14452254-14452422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
201-383
               

               
Cow position:
               
chr21:6388013-6388199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
202-455
               

               
Cow position:
               
chr21:12461948-12461694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
116, 99
               

               
Conread position:
               
203-371
               

               
Cow position:
               
chr21:36795624-36795787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
166, 19
               

               
Conread position:
               
203-424
               

               
Cow position:
               
chr21:10114309-10114089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
158, 24
               

               
Conread position:
               
204-422
               

               
Cow position:
               
chr21:30592282-30592072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
159, 16
               

               
Conread position:
               
204-455
               

               
Cow position:
               
chr21:27863491-27863243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
166, 16
               

               
Conread position:
               
207-361
               

               
Cow position:
               
chr21:395892-396041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
207-451
               

               
Cow position:
               
chr21:12154156-12154403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
207-454
               

               
Cow position:
               
chr21:28919499-28919253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
150, 90
               

               
Conread position:
               
207-455
               

               
Cow position:
               
chr21:37706391-37706137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
208-375
               

               
Cow position:
               
chr21:30157780-30157618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
208-417
               

               
Cow position:
               
chr21:18064887-18064692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr21:3360988-3360772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
155, 41
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr21:20165666-20165884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
208-443
               

               
Cow position:
               
chr21:37235411-37235632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
222, 27
               

               
Conread position:
               
208-448
               

               
Cow position:
               
chr21:5898375-5898140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
209-348
               

               
Cow position:
               
chr21:5567012-5567147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
209-361
               

               
Cow position:
               
chr21:45921031-45920885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
209-368
               

               
Cow position:
               
chr21:17062950-17063102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
209-375
               

               
Cow position:
               
chr21:19360152-19359988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
209-375
               

               
Cow position:
               
chr21:23322051-23321890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
209-406
               

               
Cow position:
               
chr21:1059106-1059291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
209-406
               

               
Cow position:
               
chr21:17642957-17642763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
152, 11
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr21:10264059-10264279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
152, 78
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr21:28907517-28907305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr21:30848915-30848704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
39, 8
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chr21:44829731-44829512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
154, 14
               

               
Conread position:
               
209-426
               

               
Cow position:
               
chr21:10561558-10561339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 89
               

               
Conread position:
               
209-438
               

               
Cow position:
               
chr21:28810236-28810016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
68, 89
               

               
Conread position:
               
209-445
               

               
Cow position:
               
chr21:641613-641855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 89
               

               
Conread position:
               
209-452
               

               
Cow position:
               
chr21:957699-957947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
152, 66
               

               
Conread position:
               
209-454
               

               
Cow position:
               
chr21:38720278-38720524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
151, 25
               

               
Conread position:
               
209-454
               

               
Cow position:
               
chr21:44565692-44565451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 67
               

               
Conread position:
               
209-457
               

               
Cow position:
               
chr21:6997967-6998221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
209-458
               

               
Cow position:
               
chr21:9416276-9416531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
145, 85
               

               
Conread position:
               
209-465
               

               
Cow position:
               
chr21:21907401-21907158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
213, 11
               

               
Conread position:
               
209-467
               

               
Cow position:
               
chr21:40266151-40266409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 62
               

               
Conread position:
               
209-474
               

               
Cow position:
               
chr21:1511319-1511579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
157, 66
               

               
Conread position:
               
210-336
               

               
Cow position:
               
chr21:30607060-30606937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 13
               

               
Conread position:
               
210-361
               

               
Cow position:
               
chr21:7581880-7581731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
210-361
               

               
Cow position:
               
chr21:40192279-40192131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
8, 36
               

               
Conread position:
               
210-363
               

               
Cow position:
               
chr21:734618-734765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
210-374
               

               
Cow position:
               
chr21:41621153-41621312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
122, 10
               

               
Conread position:
               
210-375
               

               
Cow position:
               
chr21:10538230-10538067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 90
               

               
Conread position:
               
210-375
               

               
Cow position:
               
chr21:20213748-20213588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
155, 12
               

               
Conread position:
               
210-377
               

               
Cow position:
               
chr21:13585032-13584871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
210-377
               

               
Cow position:
               
chr21:47363709-47363543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
210-378
               

               
Cow position:
               
chr21:28989637-28989805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
149, 96
               

               
Conread position:
               
210-388
               

               
Cow position:
               
chr21:977121-976940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr21:71614-71830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
153, 87
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr21:868897-868675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
151, 87
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr21:13588792-13589006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
118, 12
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr21:17890331-17890547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
153, 20
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr21:24797684-24797899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
150, 80
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr21:40134181-40134390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
18, 90
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chr21:41287766-41287552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
142, 88
               

               
Conread position:
               
210-426
               

               
Cow position:
               
chr21:6051528-6051751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
210-428
               

               
Cow position:
               
chr21:31253566-31253781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
149, 16
               

               
Conread position:
               
210-444
               

               
Cow position:
               
chr21:42209602-42209381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
210-448
               

               
Cow position:
               
chr21:13395618-13395855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
87, 156
               

               
Conread position:
               
210-454
               

               
Cow position:
               
chr21:38900799-38901040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
210-457
               

               
Cow position:
               
chr21:10004858-10004605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
151, 76
               

               
Conread position:
               
210-457
               

               
Cow position:
               
chr21:31279280-31279530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
8, 91
               

               
Conread position:
               
210-485
               

               
Cow position:
               
chr21:38449417-38449152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
211-374
               

               
Cow position:
               
chr21:20318541-20318697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
157, 75
               

               
Conread position:
               
211-384
               

               
Cow position:
               
chr21:42562661-42562823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
211-454
               

               
Cow position:
               
chr21:6713496-6713248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
211-465
               

               
Cow position:
               
chr21:8713932-8713667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
211-468
               

               
Cow position:
               
chr21:46849097-46848846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
150, 15
               

               
Conread position:
               
212-359
               

               
Cow position:
               
chr21:42841568-42841425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
212-361
               

               
Cow position:
               
chr21:26244943-26245088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
212-361
               

               
Cow position:
               
chr21:46470217-46470357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
212-375
               

               
Cow position:
               
chr21:44825860-44825698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr21:10673150-10673354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 85
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr21:30835395-30835610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
149, 50
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr21:32559337-32559127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
212-426
               

               
Cow position:
               
chr21:8426476-8426689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
149, 19
               

               
Conread position:
               
212-447
               

               
Cow position:
               
chr21:7673151-7673379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
212-449
               

               
Cow position:
               
chr21:40475529-40475770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
149, 15
               

               
Conread position:
               
213-375
               

               
Cow position:
               
chr21:10151836-10151993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
213-424
               

               
Cow position:
               
chr21:29014879-29014673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
152, 14
               

               
Conread position:
               
213-424
               

               
Cow position:
               
chr21:43692846-43693061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
213-463
               

               
Cow position:
               
chr21:643356-643609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 7
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chr21:34654104-34654361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
148, 45
               

               
Conread position:
               
214-371
               

               
Cow position:
               
chr21:46132605-46132759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 83
               

               
Conread position:
               
214-374
               

               
Cow position:
               
chr21:7681129-7681283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
214-422
               

               
Cow position:
               
chr21:3585337-3585122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
149, 82
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chr21:17252947-17252733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
139, 62
               

               
Conread position:
               
214-454
               

               
Cow position:
               
chr21:47713974-47713729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
215-353
               

               
Cow position:
               
chr21:8231645-8231512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
215-361
               

               
Cow position:
               
chr21:3818241-3818382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
215-396
               

               
Cow position:
               
chr21:45329915-45329738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
215-415
               

               
Cow position:
               
chr21:13036869-13036689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
215-422
               

               
Cow position:
               
chr21:23535743-23535955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
215-426
               

               
Cow position:
               
chr21:29978729-29978515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
7, 82
               

               
Conread position:
               
215-465
               

               
Cow position:
               
chr21:8431070-8430815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
216-375
               

               
Cow position:
               
chr21:41597844-41597999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
216-375
               

               
Cow position:
               
chr21:45473724-45473571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
216-413
               

               
Cow position:
               
chr21:7377893-7377690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
151, 81
               

               
Conread position:
               
216-423
               

               
Cow position:
               
chr21:15544187-15543996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chr21:20160709-20160922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
145, 82
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chr21:29658309-29658518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
132, 82
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chr21:44724336-44724132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 83
               

               
Conread position:
               
216-452
               

               
Cow position:
               
chr21:36508271-36508508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
145, 61
               

               
Conread position:
               
217-352
               

               
Cow position:
               
chr21:12207768-12207637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
217-361
               

               
Cow position:
               
chr21:7823395-7823538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 87
               

               
Conread position:
               
217-369
               

               
Cow position:
               
chr21:37345065-37344919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
217-371
               

               
Cow position:
               
chr21:30119728-30119877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
217-374
               

               
Cow position:
               
chr21:42384542-42384696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
151, 80
               

               
Conread position:
               
217-375
               

               
Cow position:
               
chr21:15976667-15976820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
217-375
               

               
Cow position:
               
chr21:44592175-44592020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
150, 84
               

               
Conread position:
               
217-423
               

               
Cow position:
               
chr21:11644932-11644723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 81
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chr21:31159436-31159630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
217-454
               

               
Cow position:
               
chr21:3763708-3763470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
146, 80
               

               
Conread position:
               
217-476
               

               
Cow position:
               
chr21:8545984-8545723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
144, 46
               

               
Conread position:
               
219-361
               

               
Cow position:
               
chr21:471712-471848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
219-420
               

               
Cow position:
               
chr21:7221304-7221108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
180, 77
               

               
Conread position:
               
219-424
               

               
Cow position:
               
chr21:36910773-36910981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
219-426
               

               
Cow position:
               
chr21:5464786-5464993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
130, 38
               

               
Conread position:
               
220-361
               

               
Cow position:
               
chr21:25383061-25383200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
49, 80
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr21:712979-713128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr21:33563045-33563188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
220-377
               

               
Cow position:
               
chr21:42414061-42413908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
220-377
               

               
Cow position:
               
chr21:47764080-47763928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
220-396
               

               
Cow position:
               
chr21:22939804-22939978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
220-406
               

               
Cow position:
               
chr21:7768475-7768661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
141, 78
               

               
Conread position:
               
220-406
               

               
Cow position:
               
chr21:19258859-19259042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
134, 57
               

               
Conread position:
               
220-423
               

               
Cow position:
               
chr21:11353099-11353306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
143, 39
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chr21:4281838-4281639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
141, 76
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chr21:18568602-18568393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
143, 78
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chr21:47465081-47464875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 78
               

               
Conread position:
               
220-429
               

               
Cow position:
               
chr21:30231657-30231447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
131, 60
               

               
Conread position:
               
220-436
               

               
Cow position:
               
chr21:47719262-47719047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
141, 81
               

               
Conread position:
               
220-444
               

               
Cow position:
               
chr21:45971135-45970915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
154, 57
               

               
Conread position:
               
220-453
               

               
Cow position:
               
chr21:42144863-42145098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
145, 37
               

               
Conread position:
               
220-454
               

               
Cow position:
               
chr21:27677519-27677763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
220-462
               

               
Cow position:
               
chr21:17183959-17184198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
159, 23
               

               
Conread position:
               
221-374
               

               
Cow position:
               
chr21:28924147-28924297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 77
               

               
Conread position:
               
221-449
               

               
Cow position:
               
chr21:30222383-30222617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 76
               

               
Conread position:
               
221-451
               

               
Cow position:
               
chr21:40291708-40291477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
140, 49
               

               
Conread position:
               
224-373
               

               
Cow position:
               
chr21:26567737-26567592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
225-406
               

               
Cow position:
               
chr21:44861071-44860905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
225-423
               

               
Cow position:
               
chr21:13225757-13225960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 73
               

               
Conread position:
               
226-361
               

               
Cow position:
               
chr21:13163902-13164033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
226-423
               

               
Cow position:
               
chr21:23586925-23587115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
226-424
               

               
Cow position:
               
chr21:20152999-20153201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
226-424
               

               
Cow position:
               
chr21:22210203-22209999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
132, 71
               

               
Conread position:
               
226-424
               

               
Cow position:
               
chr21:26735450-26735641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
226-454
               

               
Cow position:
               
chr21:40589441-40589200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
226-455
               

               
Cow position:
               
chr21:5426983-5427202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
226-457
               

               
Cow position:
               
chr21:30938629-30938390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 229
               

               
Conread position:
               
227-424
               

               
Cow position:
               
chr21:25014982-25014796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
228-352
               

               
Cow position:
               
chr21:35647783-35647663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
228-424
               

               
Cow position:
               
chr21:36763106-36763306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
134, 70
               

               
Conread position:
               
230-375
               

               
Cow position:
               
chr21:43259266-43259407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
115, 68
               

               
Conread position:
               
230-422
               

               
Cow position:
               
chr21:802270-802081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
179, 66
               

               
Conread position:
               
230-457
               

               
Cow position:
               
chr21:32339693-32339465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
142, 68
               

               
Conread position:
               
232-375
               

               
Cow position:
               
chr21:36909980-36910117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
233-424
               

               
Cow position:
               
chr21:82117-82303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
128, 64
               

               
Conread position:
               
236-406
               

               
Cow position:
               
chr21:30243628-30243459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
128, 67
               

               
Conread position:
               
236-465
               

               
Cow position:
               
chr21:37928702-37928938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
128, 61
               

               
Conread position:
               
237-454
               

               
Cow position:
               
chr21:15012493-15012714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
124, 58
               

               
Conread position:
               
241-452
               

               
Cow position:
               
chr21:20174376-20174590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
243-362
               

               
Cow position:
               
chr21:38268002-38267887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
246-406
               

               
Cow position:
               
chr21:40059091-40059251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
246-424
               

               
Cow position:
               
chr21:23672812-23672989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
246-424
               

               
Cow position:
               
chr21:48482465-48482286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
133, 31
               

               
Conread position:
               
246-429
               

               
Cow position:
               
chr21:42135553-42135370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
129, 51
               

               
Conread position:
               
246-463
               

               
Cow position:
               
chr21:30657933-30658151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
180, 57
               

               
Conread position:
               
247-375
               

               
Cow position:
               
chr21:265688-265810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
247-451
               

               
Cow position:
               
chr21:29418636-29418842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
114, 30
               

               
Conread position:
               
248-424
               

               
Cow position:
               
chr21:31659082-31658910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
112, 35
               

               
Conread position:
               
248-454
               

               
Cow position:
               
chr21:5218767-5218987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
250-424
               

               
Cow position:
               
chr21:49353703-49353868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr21:2785419-2785255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
251-405
               

               
Cow position:
               
chr21:13043952-13043800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
252-424
               

               
Cow position:
               
chr21:42189688-42189516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
254-424
               

               
Cow position:
               
chr21:745246-745414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
109, 44
               

               
Conread position:
               
254-449
               

               
Cow position:
               
chr21:30977185-30976996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 45
               

               
Conread position:
               
257-429
               

               
Cow position:
               
chr21:18783395-18783217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
257-438
               

               
Cow position:
               
chr21:46463651-46463828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 48
               

               
Conread position:
               
258-424
               

               
Cow position:
               
chr21:33414013-33413853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
146, 40
               

               
Conread position:
               
260-454
               

               
Cow position:
               
chr21:6291823-6292023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
260-467
               

               
Cow position:
               
chr21:24757018-24757226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
261-424
               

               
Cow position:
               
chr21:14760643-14760801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
104, 42
               

               
Conread position:
               
261-465
               

               
Cow position:
               
chr21:27521261-27521060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
102, 36
               

               
Conread position:
               
264-469
               

               
Cow position:
               
chr21:6945456-6945650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
183, 32
               

               
Conread position:
               
269-449
               

               
Cow position:
               
chr21:7424928-7424743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
270-424
               

               
Cow position:
               
chr21:37495859-37495700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
91, 26
               

               
Conread position:
               
273-453
               

               
Cow position:
               
chr21:29011880-29011703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
91, 22
               

               
Conread position:
               
278-436
               

               
Cow position:
               
chr21:21158906-21159061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
150, 20
               

               
Conread position:
               
279-424
               

               
Cow position:
               
chr21:31462658-31462801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
302-454
               

               
Cow position:
               
chr21:18495336-18495490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
303-439
               

               
Cow position:
               
chr21:2294139-2294276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
305-458
               

               
Cow position:
               
chr21:38867249-38867098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 60
               

               
Conread position:
               
312-451
               

               
Cow position:
               
chr21:33244746-33244611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
114, 21
               
Show alignments to all cow chromosomes.