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Cow genome map

           
Conread name:
           
Thy1-THY010112C06
        

               
Conread position:
               
170-452
               

               
Cow position:
               
chrX:41871019-41871298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
190, 47
               

               
Conread position:
               
172-424
               

               
Cow position:
               
chrX:8869448-8869195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
187, 59
               

               
Conread position:
               
172-444
               

               
Cow position:
               
chrX:40035487-40035207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
183-426
               

               
Cow position:
               
chrX:14986187-14985951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
157, 36
               

               
Conread position:
               
184-424
               

               
Cow position:
               
chrX:9201511-9201752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
192-361
               

               
Cow position:
               
chrX:21327883-21328050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
80, 107
               

               
Conread position:
               
192-361
               

               
Cow position:
               
chrX:33639950-33640112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
192-377
               

               
Cow position:
               
chrX:11717811-11717632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
192-386
               

               
Cow position:
               
chrX:30543311-30543125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
193-369
               

               
Cow position:
               
chrX:34315493-34315667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
195-422
               

               
Cow position:
               
chrX:46072841-46072623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
195-424
               

               
Cow position:
               
chrX:27509044-27508815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
105, 17
               

               
Conread position:
               
198-423
               

               
Cow position:
               
chrX:20151840-20152056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
181, 5
               

               
Conread position:
               
199-375
               

               
Cow position:
               
chrX:31626996-31626828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 85
               

               
Conread position:
               
199-424
               

               
Cow position:
               
chrX:4825852-4825639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
199-424
               

               
Cow position:
               
chrX:13923842-13924070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
18, 88
               

               
Conread position:
               
199-426
               

               
Cow position:
               
chrX:126753-126967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
203-375
               

               
Cow position:
               
chrX:8797239-8797400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
203-430
               

               
Cow position:
               
chrX:31294587-31294354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
162, 14
               

               
Conread position:
               
203-454
               

               
Cow position:
               
chrX:44054783-44055045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 96
               

               
Conread position:
               
204-365
               

               
Cow position:
               
chrX:37910429-37910585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
204-423
               

               
Cow position:
               
chrX:41027143-41027368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
204-424
               

               
Cow position:
               
chrX:38218699-38218922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
122, 16
               

               
Conread position:
               
204-447
               

               
Cow position:
               
chrX:42247198-42246949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
157, 93
               

               
Conread position:
               
204-449
               

               
Cow position:
               
chrX:6407531-6407779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
159, 16
               

               
Conread position:
               
204-466
               

               
Cow position:
               
chrX:39352768-39353029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
207-375
               

               
Cow position:
               
chrX:11085076-11084912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
157, 90
               

               
Conread position:
               
207-424
               

               
Cow position:
               
chrX:12095786-12095562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
207-424
               

               
Cow position:
               
chrX:42927835-42927621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
157, 19
               

               
Conread position:
               
207-448
               

               
Cow position:
               
chrX:12437286-12437050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 85
               

               
Conread position:
               
207-449
               

               
Cow position:
               
chrX:2523694-2523460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 14
               

               
Conread position:
               
207-457
               

               
Cow position:
               
chrX:20584312-20584554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
7, 93
               

               
Conread position:
               
208-372
               

               
Cow position:
               
chrX:17888430-17888275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
208-375
               

               
Cow position:
               
chrX:31312018-31312180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chrX:1616053-1615849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chrX:40685343-40685120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
208-438
               

               
Cow position:
               
chrX:19469518-19469291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
160, 89
               

               
Conread position:
               
208-444
               

               
Cow position:
               
chrX:5638180-5637948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
208-456
               

               
Cow position:
               
chrX:22624464-22624708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
218, 89
               

               
Conread position:
               
208-457
               

               
Cow position:
               
chrX:43115140-43115388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
145, 12
               

               
Conread position:
               
209-367
               

               
Cow position:
               
chrX:6260158-6260005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
151, 55
               

               
Conread position:
               
209-368
               

               
Cow position:
               
chrX:29121036-29121190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
209-369
               

               
Cow position:
               
chrX:9365686-9365531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
209-374
               

               
Cow position:
               
chrX:39220070-39220231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
155, 8
               

               
Conread position:
               
209-375
               

               
Cow position:
               
chrX:169555-169395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
209-375
               

               
Cow position:
               
chrX:18964835-18964679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
209-375
               

               
Cow position:
               
chrX:29733601-29733442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
209-377
               

               
Cow position:
               
chrX:23498688-23498525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
209-405
               

               
Cow position:
               
chrX:4515674-4515878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 94
               

               
Conread position:
               
209-405
               

               
Cow position:
               
chrX:29553274-29553467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
156, 88
               

               
Conread position:
               
209-413
               

               
Cow position:
               
chrX:20678149-20677949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chrX:8731083-8731303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
148, 73
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chrX:31729431-31729646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
152, 87
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chrX:34543773-34543995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
155, 89
               

               
Conread position:
               
209-424
               

               
Cow position:
               
chrX:35268855-35269065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 34
               

               
Conread position:
               
209-426
               

               
Cow position:
               
chrX:38208554-38208343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
209-449
               

               
Cow position:
               
chrX:22387258-22387003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
209-449
               

               
Cow position:
               
chrX:34565276-34565521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
152, 11
               

               
Conread position:
               
209-457
               

               
Cow position:
               
chrX:27705576-27705831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
154, 37
               

               
Conread position:
               
209-468
               

               
Cow position:
               
chrX:27306442-27306690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
209-476
               

               
Cow position:
               
chrX:35275975-35276243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
144, 45
               

               
Conread position:
               
210-352
               

               
Cow position:
               
chrX:19690210-19690343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
210-361
               

               
Cow position:
               
chrX:19943245-19943099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
210-361
               

               
Cow position:
               
chrX:36514902-36514755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
210-362
               

               
Cow position:
               
chrX:10411994-10411846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 9
               

               
Conread position:
               
210-366
               

               
Cow position:
               
chrX:34502907-34503062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 90
               

               
Conread position:
               
210-368
               

               
Cow position:
               
chrX:20743594-20743747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
210-369
               

               
Cow position:
               
chrX:23514024-23513875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
150, 10
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chrX:15820582-15820742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chrX:23561847-23562006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chrX:32978092-32977936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 67
               

               
Conread position:
               
210-375
               

               
Cow position:
               
chrX:27394037-27393875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
210-408
               

               
Cow position:
               
chrX:32318295-32318494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
65, 88
               

               
Conread position:
               
210-411
               

               
Cow position:
               
chrX:23188792-23188593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
210-422
               

               
Cow position:
               
chrX:37119586-37119782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chrX:20881947-20881752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chrX:31250378-31250599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
150, 81
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chrX:35383040-35382833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
151, 9
               

               
Conread position:
               
210-424
               

               
Cow position:
               
chrX:42282568-42282786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
210-426
               

               
Cow position:
               
chrX:45598616-45598397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 32
               

               
Conread position:
               
210-427
               

               
Cow position:
               
chrX:35413607-35413806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
210-429
               

               
Cow position:
               
chrX:9635199-9634974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
151, 21
               

               
Conread position:
               
210-438
               

               
Cow position:
               
chrX:38094528-38094297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
210-445
               

               
Cow position:
               
chrX:31515162-31515404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
210-447
               

               
Cow position:
               
chrX:31442839-31442604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
218, 87
               

               
Conread position:
               
210-457
               

               
Cow position:
               
chrX:7277899-7278156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
210-463
               

               
Cow position:
               
chrX:44961741-44961997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
155, 88
               

               
Conread position:
               
210-465
               

               
Cow position:
               
chrX:42492532-42492274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
152, 10
               

               
Conread position:
               
211-374
               

               
Cow position:
               
chrX:23113275-23113436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
211-377
               

               
Cow position:
               
chrX:42171302-42171145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chrX:4289430-4289643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
9, 92
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chrX:11633673-11633891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
161, 87
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chrX:31436465-31436678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
149, 87
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chrX:35278321-35278520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
141, 16
               

               
Conread position:
               
211-424
               

               
Cow position:
               
chrX:35542886-35543093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
152, 44
               

               
Conread position:
               
211-443
               

               
Cow position:
               
chrX:16836295-16836066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
166, 78
               

               
Conread position:
               
211-445
               

               
Cow position:
               
chrX:11614688-11614915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
211-454
               

               
Cow position:
               
chrX:10959403-10959175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
217, 17
               

               
Conread position:
               
211-454
               

               
Cow position:
               
chrX:42893915-42894164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 89
               

               
Conread position:
               
211-456
               

               
Cow position:
               
chrX:12249800-12250054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
212-361
               

               
Cow position:
               
chrX:878388-878243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
212-375
               

               
Cow position:
               
chrX:23091861-23092024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
212-413
               

               
Cow position:
               
chrX:37955838-37956046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
10, 87
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chrX:4466959-4467160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chrX:4632865-4632645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chrX:19394545-19394764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
145, 86
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chrX:25035392-25035172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chrX:33654851-33654634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
148, 15
               

               
Conread position:
               
212-426
               

               
Cow position:
               
chrX:45430029-45429819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
149, 8
               

               
Conread position:
               
212-438
               

               
Cow position:
               
chrX:26205456-26205229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
117, 79
               

               
Conread position:
               
212-444
               

               
Cow position:
               
chrX:11326106-11325877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
212-454
               

               
Cow position:
               
chrX:29050241-29050484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
6, 65
               

               
Conread position:
               
212-454
               

               
Cow position:
               
chrX:32420205-32420455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
212-463
               

               
Cow position:
               
chrX:12979843-12979589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
212-465
               

               
Cow position:
               
chrX:27145596-27145856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
141, 89
               

               
Conread position:
               
212-480
               

               
Cow position:
               
chrX:30672404-30672114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
85, 253
               

               
Conread position:
               
213-360
               

               
Cow position:
               
chrX:11082629-11082486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
213-371
               

               
Cow position:
               
chrX:32821023-32821174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
213-372
               

               
Cow position:
               
chrX:42235530-42235377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
213-424
               

               
Cow position:
               
chrX:1499658-1499863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
213-429
               

               
Cow position:
               
chrX:46070178-46069971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 7
               

               
Conread position:
               
214-375
               

               
Cow position:
               
chrX:25411901-25412056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
214-423
               

               
Cow position:
               
chrX:41123056-41123253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chrX:10516248-10516463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
147, 9
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chrX:27261185-27261399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
72, 83
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chrX:40680608-40680824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
147, 83
               

               
Conread position:
               
214-426
               

               
Cow position:
               
chrX:1360079-1360293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
214-426
               

               
Cow position:
               
chrX:11763007-11762800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
214-437
               

               
Cow position:
               
chrX:27511422-27511644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
165, 84
               

               
Conread position:
               
214-455
               

               
Cow position:
               
chrX:27431924-27431678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
143, 84
               

               
Conread position:
               
214-456
               

               
Cow position:
               
chrX:22392990-22392747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
214-457
               

               
Cow position:
               
chrX:20339897-20339651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
147, 29
               

               
Conread position:
               
215-361
               

               
Cow position:
               
chrX:29680266-29680124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
215-375
               

               
Cow position:
               
chrX:23785642-23785797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
126, 82
               

               
Conread position:
               
215-422
               

               
Cow position:
               
chrX:40336907-40337118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
145, 7
               

               
Conread position:
               
215-423
               

               
Cow position:
               
chrX:38549441-38549654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
57, 5
               

               
Conread position:
               
215-424
               

               
Cow position:
               
chrX:25207859-25207652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
153, 16
               

               
Conread position:
               
215-454
               

               
Cow position:
               
chrX:24331772-24332017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
114, 16
               

               
Conread position:
               
216-351
               

               
Cow position:
               
chrX:25788909-25788778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
216-367
               

               
Cow position:
               
chrX:18046397-18046538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
216-384
               

               
Cow position:
               
chrX:19097228-19097059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chrX:9252166-9251954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
151, 20
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chrX:12309390-12309176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
144, 75
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chrX:25815905-25815690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
139, 81
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chrX:27075055-27074842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
151, 81
               

               
Conread position:
               
216-438
               

               
Cow position:
               
chrX:42836177-42836405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
147, 81
               

               
Conread position:
               
216-452
               

               
Cow position:
               
chrX:15007153-15006922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
152, 81
               

               
Conread position:
               
216-455
               

               
Cow position:
               
chrX:42331274-42331519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
216-457
               

               
Cow position:
               
chrX:11656078-11656327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
145, 6
               

               
Conread position:
               
217-374
               

               
Cow position:
               
chrX:5900464-5900612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
217-383
               

               
Cow position:
               
chrX:917370-917210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
217-423
               

               
Cow position:
               
chrX:4153034-4152836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
217-423
               

               
Cow position:
               
chrX:29478721-29478930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
146, 65
               

               
Conread position:
               
217-423
               

               
Cow position:
               
chrX:41068721-41068928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
6, 81
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chrX:11653761-11653976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 87
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chrX:14973744-14973548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chrX:22074792-22075004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chrX:31489515-31489730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
217-429
               

               
Cow position:
               
chrX:29601831-29601615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
144, 80
               

               
Conread position:
               
217-447
               

               
Cow position:
               
chrX:38587846-38587607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
144, 80
               

               
Conread position:
               
217-448
               

               
Cow position:
               
chrX:13177481-13177246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
217-449
               

               
Cow position:
               
chrX:3806679-3806912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
144, 80
               

               
Conread position:
               
217-449
               

               
Cow position:
               
chrX:13121935-13122184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
129, 81
               

               
Conread position:
               
217-454
               

               
Cow position:
               
chrX:9651026-9650787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
217-457
               

               
Cow position:
               
chrX:24170732-24170481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
143, 80
               

               
Conread position:
               
217-458
               

               
Cow position:
               
chrX:17966338-17966572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
144, 81
               

               
Conread position:
               
217-464
               

               
Cow position:
               
chrX:17956690-17956948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
145, 44
               

               
Conread position:
               
217-465
               

               
Cow position:
               
chrX:20887642-20887395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
217-474
               

               
Cow position:
               
chrX:41238355-41238103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
217-481
               

               
Cow position:
               
chrX:4269067-4268804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
218-378
               

               
Cow position:
               
chrX:7646250-7646410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
115, 10
               

               
Conread position:
               
218-424
               

               
Cow position:
               
chrX:27228125-27228338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
119, 5
               

               
Conread position:
               
218-424
               

               
Cow position:
               
chrX:27446683-27446892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
218-452
               

               
Cow position:
               
chrX:12290718-12290962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
219-375
               

               
Cow position:
               
chrX:43730224-43730073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
220-358
               

               
Cow position:
               
chrX:7710539-7710405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
220-361
               

               
Cow position:
               
chrX:31829461-31829324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chrX:25036987-25037135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
220-374
               

               
Cow position:
               
chrX:29194232-29194380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
220-375
               

               
Cow position:
               
chrX:5872317-5872468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
220-393
               

               
Cow position:
               
chrX:22915041-22914873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
220-397
               

               
Cow position:
               
chrX:10305347-10305180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chrX:4645913-4645705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
108, 77
               

               
Conread position:
               
220-424
               

               
Cow position:
               
chrX:38964108-38964306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
220-426
               

               
Cow position:
               
chrX:16762771-16762979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
97, 78
               

               
Conread position:
               
220-444
               

               
Cow position:
               
chrX:42432514-42432283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 84
               

               
Conread position:
               
220-448
               

               
Cow position:
               
chrX:34222716-34222948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
142, 81
               

               
Conread position:
               
220-454
               

               
Cow position:
               
chrX:34420734-34420975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
141, 77
               

               
Conread position:
               
220-454
               

               
Cow position:
               
chrX:46587822-46588061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
143, 78
               

               
Conread position:
               
221-361
               

               
Cow position:
               
chrX:11073190-11073054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
221-411
               

               
Cow position:
               
chrX:1719116-1719304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
153, 76
               

               
Conread position:
               
221-429
               

               
Cow position:
               
chrX:4328182-4327968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
144, 77
               

               
Conread position:
               
221-437
               

               
Cow position:
               
chrX:161413-161628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
154, 77
               

               
Conread position:
               
221-453
               

               
Cow position:
               
chrX:36356113-36356347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
142, 56
               

               
Conread position:
               
224-352
               

               
Cow position:
               
chrX:37665695-37665819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
224-457
               

               
Cow position:
               
chrX:35285177-35285423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 76
               

               
Conread position:
               
225-424
               

               
Cow position:
               
chrX:31745000-31744806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
225-424
               

               
Cow position:
               
chrX:38301814-38302023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
136, 75
               

               
Conread position:
               
225-454
               

               
Cow position:
               
chrX:19018826-19018589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
136, 75
               

               
Conread position:
               
226-361
               

               
Cow position:
               
chrX:23562638-23562769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
226-375
               

               
Cow position:
               
chrX:6690254-6690109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
226-375
               

               
Cow position:
               
chrX:28878168-28878023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
226-411
               

               
Cow position:
               
chrX:15147187-15147001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
142, 51
               

               
Conread position:
               
226-423
               

               
Cow position:
               
chrX:24365815-24365614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 71
               

               
Conread position:
               
226-424
               

               
Cow position:
               
chrX:1122537-1122338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
226-424
               

               
Cow position:
               
chrX:30840546-30840750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
226-424
               

               
Cow position:
               
chrX:42450008-42449804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
135, 71
               

               
Conread position:
               
226-454
               

               
Cow position:
               
chrX:17524378-17524139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
226-454
               

               
Cow position:
               
chrX:42855464-42855701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
135, 72
               

               
Conread position:
               
226-467
               

               
Cow position:
               
chrX:35658806-35659046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 10
               

               
Conread position:
               
226-468
               

               
Cow position:
               
chrX:8925705-8925930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
227-424
               

               
Cow position:
               
chrX:32910111-32910306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
136, 71
               

               
Conread position:
               
227-427
               

               
Cow position:
               
chrX:3860621-3860437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
227-454
               

               
Cow position:
               
chrX:19717529-19717755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
134, 19
               

               
Conread position:
               
227-456
               

               
Cow position:
               
chrX:24054678-24054901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
228-424
               

               
Cow position:
               
chrX:4559747-4559943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
133, 39
               

               
Conread position:
               
228-437
               

               
Cow position:
               
chrX:4768749-4768950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 29
               

               
Conread position:
               
228-457
               

               
Cow position:
               
chrX:39180225-39179992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
133, 69
               

               
Conread position:
               
230-424
               

               
Cow position:
               
chrX:27668948-27668753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 69
               

               
Conread position:
               
230-424
               

               
Cow position:
               
chrX:43779837-43779656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
153, 67
               

               
Conread position:
               
230-426
               

               
Cow position:
               
chrX:19761764-19761960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
231-343
               

               
Cow position:
               
chrX:6213881-6213989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
233-372
               

               
Cow position:
               
chrX:753165-753304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 66
               

               
Conread position:
               
235-438
               

               
Cow position:
               
chrX:20583681-20583889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 65
               

               
Conread position:
               
236-421
               

               
Cow position:
               
chrX:907962-908147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
100, 51
               

               
Conread position:
               
236-453
               

               
Cow position:
               
chrX:29467762-29467541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
124, 60
               

               
Conread position:
               
236-467
               

               
Cow position:
               
chrX:23088872-23089095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
179, 26
               

               
Conread position:
               
238-375
               

               
Cow position:
               
chrX:23266433-23266567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
127, 58
               

               
Conread position:
               
239-383
               

               
Cow position:
               
chrX:18637508-18637648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
239-423
               

               
Cow position:
               
chrX:41810149-41809967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
131, 58
               

               
Conread position:
               
239-452
               

               
Cow position:
               
chrX:28940261-28940481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 58
               

               
Conread position:
               
244-424
               

               
Cow position:
               
chrX:44995521-44995709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 55
               

               
Conread position:
               
246-375
               

               
Cow position:
               
chrX:37062559-37062433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 51
               

               
Conread position:
               
246-424
               

               
Cow position:
               
chrX:23359085-23358908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
115, 41
               

               
Conread position:
               
246-424
               

               
Cow position:
               
chrX:30962851-30962666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
111, 54
               

               
Conread position:
               
246-448
               

               
Cow position:
               
chrX:32877349-32877140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
115, 51
               

               
Conread position:
               
246-456
               

               
Cow position:
               
chrX:32866901-32867112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
115, 52
               

               
Conread position:
               
248-453
               

               
Cow position:
               
chrX:46909843-46910053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
113, 49
               

               
Conread position:
               
248-455
               

               
Cow position:
               
chrX:16763899-16763690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
249-453
               

               
Cow position:
               
chrX:2314590-2314378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
250-424
               

               
Cow position:
               
chrX:31986544-31986363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
105, 49
               

               
Conread position:
               
250-424
               

               
Cow position:
               
chrX:36722775-36722604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
113, 48
               

               
Conread position:
               
251-389
               

               
Cow position:
               
chrX:27667456-27667590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
252-424
               

               
Cow position:
               
chrX:47379089-47378921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
103, 46
               

               
Conread position:
               
252-444
               

               
Cow position:
               
chrX:2551123-2551314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
160, 46
               

               
Conread position:
               
252-450
               

               
Cow position:
               
chrX:48822310-48822104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
109, 51
               

               
Conread position:
               
253-457
               

               
Cow position:
               
chrX:17498355-17498567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
103, 47
               

               
Conread position:
               
257-424
               

               
Cow position:
               
chrX:16556180-16556014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
106, 43
               

               
Conread position:
               
257-424
               

               
Cow position:
               
chrX:42875250-42875418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
104, 7
               

               
Conread position:
               
258-426
               

               
Cow position:
               
chrX:19795466-19795298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 40
               

               
Conread position:
               
258-437
               

               
Cow position:
               
chrX:34837026-34836849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
258-462
               

               
Cow position:
               
chrX:37752068-37751866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 40
               

               
Conread position:
               
258-463
               

               
Cow position:
               
chrX:11454224-11454424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
259-446
               

               
Cow position:
               
chrX:30824028-30824217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
103, 30
               

               
Conread position:
               
260-422
               

               
Cow position:
               
chrX:40567665-40567812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
260-423
               

               
Cow position:
               
chrX:27415540-27415380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
109, 38
               

               
Conread position:
               
260-424
               

               
Cow position:
               
chrX:45759711-45759878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
261-422
               

               
Cow position:
               
chrX:40116523-40116675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
262-448
               

               
Cow position:
               
chrX:46068717-46068528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
263-447
               

               
Cow position:
               
chrX:21986248-21986065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
165, 37
               

               
Conread position:
               
263-448
               

               
Cow position:
               
chrX:5097756-5097555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
98, 44
               

               
Conread position:
               
263-454
               

               
Cow position:
               
chrX:32747775-32747966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
111, 37
               

               
Conread position:
               
266-450
               

               
Cow position:
               
chrX:23108087-23108263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
168, 37
               

               
Conread position:
               
266-465
               

               
Cow position:
               
chrX:23497643-23497450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
97, 11
               

               
Conread position:
               
268-424
               

               
Cow position:
               
chrX:41166777-41166620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 30
               

               
Conread position:
               
270-453
               

               
Cow position:
               
chrX:12800-12985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
272-407
               

               
Cow position:
               
chrX:40543469-40543336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
278-450
               

               
Cow position:
               
chrX:20752280-20752443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
150, 20
               

               
Conread position:
               
278-462
               

               
Cow position:
               
chrX:17525809-17525631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
286-424
               

               
Cow position:
               
chrX:14900438-14900302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
300-424
               

               
Cow position:
               
chrX:35029850-35029726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
302-468
               

               
Cow position:
               
chrX:1571511-1571336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
313-426
               

               
Cow position:
               
chrX:3494958-3494839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               
Show alignments to all cow chromosomes.