Non-Coding RNA Search

Cow genome map


           Conread name:
           Thy1-THY010121B08
        

               Conread position:
               1-367
               

               Cow position:
               chr1:55146910-55146542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               270
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               74, 18
               

               Conread position:
               1-489
               

               Cow position:
               chr1:51968576-51968083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 103
               

               Conread position:
               10-192
               

               Cow position:
               chr1:6752126-6752311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               61, 132
               

               Conread position:
               10-348
               

               Cow position:
               chr1:71078855-71079193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 96
               

               Conread position:
               10-356
               

               Cow position:
               chr1:81563850-81563485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 99
               

               Conread position:
               10-483
               

               Cow position:
               chr1:68855270-68854801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               11-104
               

               Cow position:
               chr1:44269193-44269099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               95
               

               Alignm identity:
               81
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               11-123
               

               Cow position:
               chr1:52429556-52429670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               95
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-123
               

               Cow position:
               chr1:68688687-68688573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               58, 97
               

               Conread position:
               11-126
               

               Cow position:
               chr1:759314-759431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               11-132
               

               Cow position:
               chr1:45315532-45315655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               58, 97
               

               Conread position:
               11-134
               

               Cow position:
               chr1:55753112-55753236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               59, 88
               

               Conread position:
               11-136
               

               Cow position:
               chr1:42537218-42537346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               55, 22
               

               Conread position:
               11-136
               

               Cow position:
               chr1:83618500-83618631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               49, 101
               

               Conread position:
               11-139
               

               Cow position:
               chr1:19962154-19962026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               104
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               117, 94
               

               Conread position:
               11-143
               

               Cow position:
               chr1:62034725-62034859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               59, 40
               

               Conread position:
               11-143
               

               Cow position:
               chr1:82556308-82556438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               11-146
               

               Cow position:
               chr1:67654216-67654353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               11-148
               

               Cow position:
               chr1:41027178-41027041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               63, 96
               

               Conread position:
               11-149
               

               Cow position:
               chr1:48214054-48214191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               11-152
               

               Cow position:
               chr1:8670877-8670734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-155
               

               Cow position:
               chr1:62997900-62997756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               128, 94
               

               Conread position:
               11-161
               

               Cow position:
               chr1:97833811-97833663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               131, 90
               

               Conread position:
               11-163
               

               Cow position:
               chr1:49153420-49153267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               120, 22
               

               Conread position:
               11-164
               

               Cow position:
               chr1:816308-816461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               124, 94
               

               Conread position:
               11-169
               

               Cow position:
               chr1:81481278-81481439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               64, 97
               

               Conread position:
               11-171
               

               Cow position:
               chr1:3942112-3942267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               59, 6
               

               Conread position:
               11-173
               

               Cow position:
               chr1:4581226-4581391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               11-174
               

               Cow position:
               chr1:64113686-64113854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               23, 98
               

               Conread position:
               11-175
               

               Cow position:
               chr1:62235343-62235508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               34, 98
               

               Conread position:
               11-175
               

               Cow position:
               chr1:79004075-79003913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               135, 26
               

               Conread position:
               11-178
               

               Cow position:
               chr1:3965937-3965776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               11-178
               

               Cow position:
               chr1:30136250-30136418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               58, 85
               

               Conread position:
               11-178
               

               Cow position:
               chr1:95072436-95072266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               59, 94
               

               Conread position:
               11-182
               

               Cow position:
               chr1:46143358-46143530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               61, 97
               

               Conread position:
               11-187
               

               Cow position:
               chr1:89158021-89158202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-190
               

               Cow position:
               chr1:35671643-35671466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               118, 94
               

               Conread position:
               11-191
               

               Cow position:
               chr1:31855143-31855313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-191
               

               Cow position:
               chr1:48206432-48206611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               114, 66
               

               Conread position:
               11-191
               

               Cow position:
               chr1:98576151-98575969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               63, 97
               

               Conread position:
               11-192
               

               Cow position:
               chr1:48769906-48769726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               11-193
               

               Cow position:
               chr1:52467407-52467223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               152
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               49, 99
               

               Conread position:
               11-195
               

               Cow position:
               chr1:33998860-33998675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               111, 94
               

               Conread position:
               11-195
               

               Cow position:
               chr1:86340364-86340554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               142, 68
               

               Conread position:
               11-196
               

               Cow position:
               chr1:7023225-7023039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               62, 96
               

               Conread position:
               11-196
               

               Cow position:
               chr1:17196523-17196711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               64, 97
               

               Conread position:
               11-196
               

               Cow position:
               chr1:27463237-27463050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               64, 84
               

               Conread position:
               11-196
               

               Cow position:
               chr1:30189256-30189065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               62, 99
               

               Conread position:
               11-196
               

               Cow position:
               chr1:49824960-49825151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               20, 24
               

               Conread position:
               11-196
               

               Cow position:
               chr1:50992037-50991853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-196
               

               Cow position:
               chr1:56618551-56618732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               64, 37
               

               Conread position:
               11-196
               

               Cow position:
               chr1:64572619-64572432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               59, 95
               

               Conread position:
               11-196
               

               Cow position:
               chr1:65028638-65028450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               153
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               62, 98
               

               Conread position:
               11-196
               

               Cow position:
               chr1:67688479-67688661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               59, 43
               

               Conread position:
               11-196
               

               Cow position:
               chr1:72813720-72813533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               80, 67
               

               Conread position:
               11-196
               

               Cow position:
               chr1:88913423-88913237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               64, 49
               

               Conread position:
               11-196
               

               Cow position:
               chr1:90904652-90904835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               60, 94
               

               Conread position:
               11-196
               

               Cow position:
               chr1:99793651-99793462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               119, 94
               

               Conread position:
               11-198
               

               Cow position:
               chr1:5155115-5155303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               59, 6
               

               Conread position:
               11-198
               

               Cow position:
               chr1:78066433-78066622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               58, 97
               

               Conread position:
               11-199
               

               Cow position:
               chr1:98512030-98511843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               59, 16
               

               Conread position:
               11-200
               

               Cow position:
               chr1:95974504-95974309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               63, 97
               

               Conread position:
               11-205
               

               Cow position:
               chr1:24581680-24581492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               60, 83
               

               Conread position:
               11-208
               

               Cow position:
               chr1:45223685-45223484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               63, 99
               

               Conread position:
               11-208
               

               Cow position:
               chr1:77232474-77232665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-208
               

               Cow position:
               chr1:81580281-81580078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               60, 96
               

               Conread position:
               11-214
               

               Cow position:
               chr1:10716600-10716390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               60, 96
               

               Conread position:
               11-214
               

               Cow position:
               chr1:23998832-23999033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               64, 23
               

               Conread position:
               11-223
               

               Cow position:
               chr1:22824009-22823794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               64, 97
               

               Conread position:
               11-226
               

               Cow position:
               chr1:20104370-20104144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               64, 100
               

               Conread position:
               11-229
               

               Cow position:
               chr1:26934168-26934388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               63, 101
               

               Conread position:
               11-231
               

               Cow position:
               chr1:19226953-19227173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               59, 96
               

               Conread position:
               11-234
               

               Cow position:
               chr1:78838899-78838666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               58, 75
               

               Conread position:
               11-237
               

               Cow position:
               chr1:41047199-41047435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               63, 17
               

               Conread position:
               11-240
               

               Cow position:
               chr1:8128864-8129105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               64, 97
               

               Conread position:
               11-240
               

               Cow position:
               chr1:89230127-89230366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               59, 98
               

               Conread position:
               11-240
               

               Cow position:
               chr1:89449004-89448759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               11-240
               

               Cow position:
               chr1:97090430-97090189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-243
               

               Cow position:
               chr1:85549974-85550219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-249
               

               Cow position:
               chr1:42175831-42175578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               59, 103
               

               Conread position:
               11-249
               

               Cow position:
               chr1:85647678-85647928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               192
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               64, 13
               

               Conread position:
               11-249
               

               Cow position:
               chr1:87197924-87197681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 97
               

               Conread position:
               11-249
               

               Cow position:
               chr1:91023363-91023614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               59, 83
               

               Conread position:
               11-255
               

               Cow position:
               chr1:97954364-97954612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               63, 97
               

               Conread position:
               11-261
               

               Cow position:
               chr1:3882355-3882622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-261
               

               Cow position:
               chr1:18780225-18780493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               59, 102
               

               Conread position:
               11-261
               

               Cow position:
               chr1:45553139-45553388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               124, 94
               

               Conread position:
               11-274
               

               Cow position:
               chr1:12978786-12978512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               11-274
               

               Cow position:
               chr1:27380560-27380306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               11-277
               

               Cow position:
               chr1:97696848-97696569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               111, 94
               

               Conread position:
               11-283
               

               Cow position:
               chr1:22525982-22525711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               186
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               54, 97
               

               Conread position:
               11-283
               

               Cow position:
               chr1:101632233-101632508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-294
               

               Cow position:
               chr1:89388448-89388151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               59, 101
               

               Conread position:
               11-299
               

               Cow position:
               chr1:58754693-58754970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               11-299
               

               Cow position:
               chr1:61012417-61012124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               61, 97
               

               Conread position:
               11-299
               

               Cow position:
               chr1:91874813-91875102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               60, 39
               

               Conread position:
               11-299
               

               Cow position:
               chr1:92369838-92369543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               224
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               60, 11
               

               Conread position:
               11-305
               

               Cow position:
               chr1:724844-724543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               195
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               64, 100
               

               Conread position:
               11-306
               

               Cow position:
               chr1:83072545-83072251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               228
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               11-314
               

               Cow position:
               chr1:94261640-94261347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               11-316
               

               Cow position:
               chr1:4414105-4414410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 75
               

               Conread position:
               11-317
               

               Cow position:
               chr1:75142101-75141803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               64, 95
               

               Conread position:
               11-322
               

               Cow position:
               chr1:100393059-100393373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               234
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               61, 100
               

               Conread position:
               11-323
               

               Cow position:
               chr1:62291597-62291895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               225
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               235, 94
               

               Conread position:
               11-325
               

               Cow position:
               chr1:53671646-53671961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               239
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               33, 41
               

               Conread position:
               11-328
               

               Cow position:
               chr1:4291268-4290944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               228
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-328
               

               Cow position:
               chr1:43388948-43389262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 61
               

               Conread position:
               11-328
               

               Cow position:
               chr1:55705139-55705468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               247
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               37, 100
               

               Conread position:
               11-328
               

               Cow position:
               chr1:70435102-70434779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               239
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               62, 82
               

               Conread position:
               11-328
               

               Cow position:
               chr1:84910545-84910848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               126, 62
               

               Conread position:
               11-328
               

               Cow position:
               chr1:93044121-93043811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 62
               

               Conread position:
               11-328
               

               Cow position:
               chr1:97611553-97611867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               19, 27
               

               Conread position:
               11-328
               

               Cow position:
               chr1:98031026-98030700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 14
               

               Conread position:
               11-336
               

               Cow position:
               chr1:102785057-102784738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 29
               

               Conread position:
               11-337
               

               Cow position:
               chr1:52052613-52052930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               233
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               64, 99
               

               Conread position:
               11-337
               

               Cow position:
               chr1:89381379-89381052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               249
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               60, 98
               

               Conread position:
               11-339
               

               Cow position:
               chr1:6077995-6077670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               117, 62
               

               Conread position:
               11-350
               

               Cow position:
               chr1:25281553-25281918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               57, 97
               

               Conread position:
               11-352
               

               Cow position:
               chr1:51445990-51445635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               249
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               64, 92
               

               Conread position:
               11-354
               

               Cow position:
               chr1:71253452-71253801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 94
               

               Conread position:
               11-354
               

               Cow position:
               chr1:98594669-98594325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               190, 67
               

               Conread position:
               11-355
               

               Cow position:
               chr1:50930875-50931216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               242
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               313, 84
               

               Conread position:
               11-355
               

               Cow position:
               chr1:101834919-101834593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               212, 62
               

               Conread position:
               11-356
               

               Cow position:
               chr1:92197557-92197212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 82
               

               Conread position:
               11-358
               

               Cow position:
               chr1:70538715-70538353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 97
               

               Conread position:
               11-359
               

               Cow position:
               chr1:3923696-3924045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               248
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               61, 97
               

               Conread position:
               11-359
               

               Cow position:
               chr1:24534153-24534494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               10, 23
               

               Conread position:
               11-359
               

               Cow position:
               chr1:43505633-43505272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 97
               

               Conread position:
               11-359
               

               Cow position:
               chr1:47233374-47233726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               11-359
               

               Cow position:
               chr1:69678221-69678573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 49
               

               Conread position:
               11-360
               

               Cow position:
               chr1:96947617-96947946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               250
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               64, 44
               

               Conread position:
               11-361
               

               Cow position:
               chr1:5135606-5135944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               11-361
               

               Cow position:
               chr1:85162443-85162800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 97
               

               Conread position:
               11-362
               

               Cow position:
               chr1:1956231-1956583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               262
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               60, 20
               

               Conread position:
               11-366
               

               Cow position:
               chr1:196901-197260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-366
               

               Cow position:
               chr1:6941572-6941208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               266
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-366
               

               Cow position:
               chr1:6958985-6958621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-366
               

               Cow position:
               chr1:37321898-37322264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 57
               

               Conread position:
               11-366
               

               Cow position:
               chr1:52912794-52913118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 41
               

               Conread position:
               11-366
               

               Cow position:
               chr1:61885017-61884657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 97
               

               Conread position:
               11-366
               

               Cow position:
               chr1:64302139-64302490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               35, 98
               

               Conread position:
               11-366
               

               Cow position:
               chr1:74084087-74084447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               253
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               114, 97
               

               Conread position:
               11-366
               

               Cow position:
               chr1:74947014-74947375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               7, 17
               

               Conread position:
               11-366
               

               Cow position:
               chr1:83748046-83747685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-366
               

               Cow position:
               chr1:95764990-95765347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               77, 16
               

               Conread position:
               11-367
               

               Cow position:
               chr1:41252306-41252662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               262
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               85, 61
               

               Conread position:
               11-367
               

               Cow position:
               chr1:54478433-54478063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               261
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-367
               

               Cow position:
               chr1:71295188-71295567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 101
               

               Conread position:
               11-367
               

               Cow position:
               chr1:80900223-80899849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 23
               

               Conread position:
               11-367
               

               Cow position:
               chr1:93810533-93810184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-371
               

               Cow position:
               chr1:37706873-37707232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 67
               

               Conread position:
               11-376
               

               Cow position:
               chr1:61741864-61742238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 96
               

               Conread position:
               11-380
               

               Cow position:
               chr1:29935283-29935654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 95
               

               Conread position:
               11-381
               

               Cow position:
               chr1:39509954-39510316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-384
               

               Cow position:
               chr1:89509817-89510210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 97
               

               Conread position:
               11-388
               

               Cow position:
               chr1:99609472-99609084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               281
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               59, 94
               

               Conread position:
               11-391
               

               Cow position:
               chr1:25383772-25383373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-392
               

               Cow position:
               chr1:75744966-75744578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-394
               

               Cow position:
               chr1:26688369-26688762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               267
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               7, 17
               

               Conread position:
               11-398
               

               Cow position:
               chr1:81613493-81613089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 97
               

               Conread position:
               11-399
               

               Cow position:
               chr1:52956355-52955982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               18, 41
               

               Conread position:
               11-403
               

               Cow position:
               chr1:45555469-45555062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               283
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               59, 6
               

               Conread position:
               11-412
               

               Cow position:
               chr1:41056782-41056373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-416
               

               Cow position:
               chr1:88652740-88652317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 103
               

               Conread position:
               11-417
               

               Cow position:
               chr1:100800457-100800042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 98
               

               Conread position:
               11-421
               

               Cow position:
               chr1:12464560-12464972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               11-421
               

               Cow position:
               chr1:33330990-33331389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 94
               

               Conread position:
               11-428
               

               Cow position:
               chr1:37886708-37887112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 62
               

               Conread position:
               11-432
               

               Cow position:
               chr1:42887173-42887590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               11-435
               

               Cow position:
               chr1:7350652-7350205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 100
               

               Conread position:
               11-437
               

               Cow position:
               chr1:73960804-73960365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 35
               

               Conread position:
               11-437
               

               Cow position:
               chr1:95215086-95215511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               11-438
               

               Cow position:
               chr1:69264912-69264486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 83
               

               Conread position:
               11-438
               

               Cow position:
               chr1:81913051-81913485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 40
               

               Conread position:
               11-447
               

               Cow position:
               chr1:77462454-77462021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               300
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               134, 39
               

               Conread position:
               11-449
               

               Cow position:
               chr1:16855595-16856020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-457
               

               Cow position:
               chr1:44125534-44126004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 94
               

               Conread position:
               11-464
               

               Cow position:
               chr1:53623059-53622605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               288
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               62, 22
               

               Conread position:
               11-468
               

               Cow position:
               chr1:80973505-80973989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               325
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               121, 16
               

               Conread position:
               11-469
               

               Cow position:
               chr1:3166972-3167433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 94
               

               Conread position:
               11-470
               

               Cow position:
               chr1:84239019-84239454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               319
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-471
               

               Cow position:
               chr1:11729279-11728824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               326
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-473
               

               Cow position:
               chr1:8719-8252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-473
               

               Cow position:
               chr1:69694889-69695379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 23
               

               Conread position:
               11-476
               

               Cow position:
               chr1:41735516-41735992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 17
               

               Conread position:
               11-478
               

               Cow position:
               chr1:82884291-82884761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 33
               

               Conread position:
               11-482
               

               Cow position:
               chr1:35162514-35162029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 97
               

               Conread position:
               11-482
               

               Cow position:
               chr1:69539795-69539317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 97
               

               Conread position:
               11-483
               

               Cow position:
               chr1:53521019-53520531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 101
               

               Conread position:
               11-484
               

               Cow position:
               chr1:37309415-37309892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-484
               

               Cow position:
               chr1:48730728-48731212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 62
               

               Conread position:
               11-484
               

               Cow position:
               chr1:56225573-56225096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 97
               

               Conread position:
               11-485
               

               Cow position:
               chr1:8349221-8349691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-486
               

               Cow position:
               chr1:48105332-48105820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 51
               

               Conread position:
               11-486
               

               Cow position:
               chr1:62964370-62963900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               11-487
               

               Cow position:
               chr1:21787440-21786937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 97
               

               Conread position:
               11-488
               

               Cow position:
               chr1:72304285-72304753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 14
               

               Conread position:
               11-490
               

               Cow position:
               chr1:7971516-7971064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 98
               

               Conread position:
               11-496
               

               Cow position:
               chr1:57575660-57576156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 100
               

               Conread position:
               11-496
               

               Cow position:
               chr1:81290610-81290127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 96
               

               Conread position:
               11-497
               

               Cow position:
               chr1:70380039-70380550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 93
               

               Conread position:
               11-498
               

               Cow position:
               chr1:24132959-24133459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 94
               

               Conread position:
               11-498
               

               Cow position:
               chr1:82880748-82880275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 95
               

               Conread position:
               11-498
               

               Cow position:
               chr1:85029058-85028565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 99
               

               Conread position:
               11-499
               

               Cow position:
               chr1:45288767-45289268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               11-499
               

               Cow position:
               chr1:52039740-52039240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 95
               

               Conread position:
               11-500
               

               Cow position:
               chr1:13547874-13548390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               346
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               63, 6
               

               Conread position:
               11-503
               

               Cow position:
               chr1:10778667-10778173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               11-503
               

               Cow position:
               chr1:43352552-43353050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 67
               

               Conread position:
               11-504
               

               Cow position:
               chr1:79844569-79844067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               11-505
               

               Cow position:
               chr1:13637559-13638065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               11-505
               

               Cow position:
               chr1:39068852-39069365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               11-505
               

               Cow position:
               chr1:41697159-41696658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 94
               

               Conread position:
               11-505
               

               Cow position:
               chr1:53458799-53458303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 92
               

               Conread position:
               11-506
               

               Cow position:
               chr1:15333995-15333505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 62
               

               Conread position:
               11-506
               

               Cow position:
               chr1:36875130-36874614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 23
               

               Conread position:
               11-506
               

               Cow position:
               chr1:42873846-42874351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 99
               

               Conread position:
               11-506
               

               Cow position:
               chr1:46693551-46694060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 15
               

               Conread position:
               11-506
               

               Cow position:
               chr1:51394522-51394006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 96
               

               Conread position:
               11-506
               

               Cow position:
               chr1:64678799-64678305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 97
               

               Conread position:
               11-506
               

               Cow position:
               chr1:68618828-68619323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 7
               

               Conread position:
               11-506
               

               Cow position:
               chr1:68817695-68818216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 96
               

               Conread position:
               11-506
               

               Cow position:
               chr1:74822555-74822046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 102
               

               Conread position:
               11-506
               

               Cow position:
               chr1:76019593-76020084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 41
               

               Conread position:
               11-506
               

               Cow position:
               chr1:81355599-81356107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 99
               

               Conread position:
               11-506
               

               Cow position:
               chr1:82936493-82936988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               11-506
               

               Cow position:
               chr1:84255871-84255354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 99
               

               Conread position:
               11-506
               

               Cow position:
               chr1:89341876-89342392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 103
               

               Conread position:
               11-506
               

               Cow position:
               chr1:89350069-89349578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 98
               

               Conread position:
               11-506
               

               Cow position:
               chr1:90621401-90621899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 98
               

               Conread position:
               11-506
               

               Cow position:
               chr1:93499724-93499219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 7
               

               Conread position:
               11-506
               

               Cow position:
               chr1:95177041-95176531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 14
               

               Conread position:
               11-506
               

               Cow position:
               chr1:95499392-95499901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 96
               

               Conread position:
               11-506
               

               Cow position:
               chr1:98551823-98551317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 6
               

               Conread position:
               11-506
               

               Cow position:
               chr1:99642265-99642763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 88
               

               Conread position:
               12-160
               

               Cow position:
               chr1:57091081-57090930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               58, 96
               

               Conread position:
               12-171
               

               Cow position:
               chr1:52662070-52662231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 93
               

               Conread position:
               12-196
               

               Cow position:
               chr1:61542816-61542999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               8, 22
               

               Conread position:
               12-196
               

               Cow position:
               chr1:80841749-80841571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               58, 97
               

               Conread position:
               12-221
               

               Cow position:
               chr1:91811880-91811668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               177, 66
               

               Conread position:
               12-272
               

               Cow position:
               chr1:86110641-86110898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               209
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               184, 54
               

               Conread position:
               12-328
               

               Cow position:
               chr1:74955918-74956238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               237
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               133, 61
               

               Conread position:
               12-367
               

               Cow position:
               chr1:21836034-21835689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               245
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               93, 61
               

               Conread position:
               12-390
               

               Cow position:
               chr1:21954122-21954503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               278
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               63, 7
               

               Conread position:
               12-465
               

               Cow position:
               chr1:83582830-83583317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 96
               

               Conread position:
               12-471
               

               Cow position:
               chr1:36998288-36997828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 97
               

               Conread position:
               12-486
               

               Cow position:
               chr1:72068732-72069210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 96
               

               Conread position:
               12-505
               

               Cow position:
               chr1:68253698-68253188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 99
               

               Conread position:
               12-505
               

               Cow position:
               chr1:81568925-81569439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 97
               

               Conread position:
               12-506
               

               Cow position:
               chr1:38277926-38278435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               12-506
               

               Cow position:
               chr1:102349647-102350173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 64
               

               Conread position:
               13-136
               

               Cow position:
               chr1:27959449-27959573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               102
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               61, 92
               

               Conread position:
               13-142
               

               Cow position:
               chr1:98912104-98911979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               103
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               13-191
               

               Cow position:
               chr1:68672500-68672676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               13-193
               

               Cow position:
               chr1:98583855-98583679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               61, 96
               

               Conread position:
               13-194
               

               Cow position:
               chr1:45670734-45670559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               7, 23
               

               Conread position:
               13-197
               

               Cow position:
               chr1:79640186-79640373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               60, 95
               

               Conread position:
               13-278
               

               Cow position:
               chr1:78097029-78096762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 95
               

               Conread position:
               13-289
               

               Cow position:
               chr1:42545677-42545959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               13-293
               

               Cow position:
               chr1:20667640-20667921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               56, 97
               

               Conread position:
               13-317
               

               Cow position:
               chr1:68863133-68862832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               208
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               118, 60
               

               Conread position:
               13-328
               

               Cow position:
               chr1:98461388-98461076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               57, 90
               

               Conread position:
               13-347
               

               Cow position:
               chr1:62036904-62036570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 95
               

               Conread position:
               13-351
               

               Cow position:
               chr1:59519017-59518662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               125, 55
               

               Conread position:
               13-354
               

               Cow position:
               chr1:51531853-51531527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               84, 65
               

               Conread position:
               13-360
               

               Cow position:
               chr1:19481979-19482326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               263
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               62, 96
               

               Conread position:
               13-360
               

               Cow position:
               chr1:78811140-78810784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               251
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               60, 95
               

               Conread position:
               13-421
               

               Cow position:
               chr1:63434704-63435122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               13-469
               

               Cow position:
               chr1:81868627-81869084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               293
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               7, 23
               

               Conread position:
               13-494
               

               Cow position:
               chr1:101634814-101634313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 96
               

               Conread position:
               13-504
               

               Cow position:
               chr1:3789967-3790456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 91
               

               Conread position:
               13-506
               

               Cow position:
               chr1:3138016-3137532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 64
               

               Conread position:
               13-506
               

               Cow position:
               chr1:22729158-22728645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 22
               

               Conread position:
               13-506
               

               Cow position:
               chr1:22827260-22826763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 96
               

               Conread position:
               13-506
               

               Cow position:
               chr1:72011711-72012210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               13-506
               

               Cow position:
               chr1:84811837-84812354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 95
               

               Conread position:
               13-506
               

               Cow position:
               chr1:85774559-85774060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 95
               

               Conread position:
               14-178
               

               Cow position:
               chr1:86912541-86912375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               56, 94
               

               Conread position:
               14-196
               

               Cow position:
               chr1:42541699-42541515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               60, 94
               

               Conread position:
               14-196
               

               Cow position:
               chr1:82513252-82513437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               56, 94
               

               Conread position:
               14-244
               

               Cow position:
               chr1:39426904-39427135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               56, 94
               

               Conread position:
               14-414
               

               Cow position:
               chr1:68845389-68845792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 64
               

               Conread position:
               14-506
               

               Cow position:
               chr1:20384522-20385029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 65
               

               Conread position:
               15-134
               

               Cow position:
               chr1:40935667-40935788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               54, 93
               

               Conread position:
               15-175
               

               Cow position:
               chr1:80584530-80584370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               60, 93
               

               Conread position:
               15-194
               

               Cow position:
               chr1:43855395-43855222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               15-194
               

               Cow position:
               chr1:100474334-100474152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               56, 93
               

               Conread position:
               15-196
               

               Cow position:
               chr1:69551377-69551567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               34, 100
               

               Conread position:
               15-302
               

               Cow position:
               chr1:54156635-54156929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               54, 92
               

               Conread position:
               15-328
               

               Cow position:
               chr1:34771403-34771718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               5, 20
               

               Conread position:
               15-356
               

               Cow position:
               chr1:10633146-10632805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               60, 96
               

               Conread position:
               15-358
               

               Cow position:
               chr1:78857229-78857572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 93
               

               Conread position:
               15-366
               

               Cow position:
               chr1:5597111-5597451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 83
               

               Conread position:
               15-449
               

               Cow position:
               chr1:20205127-20204678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 88
               

               Conread position:
               15-464
               

               Cow position:
               chr1:90868342-90868800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 18
               

               Conread position:
               15-487
               

               Cow position:
               chr1:49796092-49795624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               340
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               167, 63
               

               Conread position:
               15-506
               

               Cow position:
               chr1:1981013-1981515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 78
               

               Conread position:
               15-506
               

               Cow position:
               chr1:3456950-3456468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 61
               

               Conread position:
               15-506
               

               Cow position:
               chr1:53398075-53397580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 94
               

               Conread position:
               15-506
               

               Cow position:
               chr1:54206716-54207224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 93
               

               Conread position:
               15-506
               

               Cow position:
               chr1:61005463-61005964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 45
               

               Conread position:
               16-167
               

               Cow position:
               chr1:92590291-92590142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               111, 62
               

               Conread position:
               16-302
               

               Cow position:
               chr1:43703508-43703226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               58, 94
               

               Conread position:
               16-397
               

               Cow position:
               chr1:1991315-1991721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               290
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               26, 97
               

               Conread position:
               17-155
               

               Cow position:
               chr1:85772107-85771968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               111
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               52, 91
               

               Conread position:
               17-193
               

               Cow position:
               chr1:102306048-102306222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               125, 34
               

               Conread position:
               17-361
               

               Cow position:
               chr1:36932252-36931906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               246
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               57, 77
               

               Conread position:
               17-366
               

               Cow position:
               chr1:69540380-69540025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               247
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               127, 49
               

               Conread position:
               18-484
               

               Cow position:
               chr1:53425273-53424811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 15
               

               Conread position:
               20-367
               

               Cow position:
               chr1:31390494-31390843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               50, 13
               

               Conread position:
               20-503
               

               Cow position:
               chr1:64250957-64251468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 58
               

               Conread position:
               21-196
               

               Cow position:
               chr1:55819145-55818980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               21-348
               

               Cow position:
               chr1:44507067-44506728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               49, 87
               

               Conread position:
               22-506
               

               Cow position:
               chr1:29916507-29916009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               344
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               52, 29
               

               Conread position:
               24-167
               

               Cow position:
               chr1:43286437-43286291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               47, 84
               

               Conread position:
               24-196
               

               Cow position:
               chr1:86682469-86682643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               46, 85
               

               Conread position:
               24-234
               

               Cow position:
               chr1:5023671-5023888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               46, 84
               

               Conread position:
               24-326
               

               Cow position:
               chr1:92010402-92010101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               97, 21
               

               Conread position:
               24-328
               

               Cow position:
               chr1:89076542-89076850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               51, 87
               

               Conread position:
               24-360
               

               Cow position:
               chr1:47658436-47658103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               50, 87
               

               Conread position:
               24-367
               

               Cow position:
               chr1:90422992-90423345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               69, 21
               

               Conread position:
               24-368
               

               Cow position:
               chr1:80764445-80764795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               52, 21
               

               Conread position:
               24-382
               

               Cow position:
               chr1:40600136-40599776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 85
               

               Conread position:
               24-506
               

               Cow position:
               chr1:4374246-4374742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 84
               

               Conread position:
               25-187
               

               Cow position:
               chr1:5539188-5539350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               48, 6
               

               Conread position:
               25-195
               

               Cow position:
               chr1:37124219-37124045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               49, 84
               

               Conread position:
               25-381
               

               Cow position:
               chr1:60707493-60707133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               48, 61
               

               Conread position:
               25-486
               

               Cow position:
               chr1:55135927-55135459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 90
               

               Conread position:
               26-322
               

               Cow position:
               chr1:63138930-63138630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               48, 85
               

               Conread position:
               26-329
               

               Cow position:
               chr1:26178724-26179030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               49, 5
               

               Conread position:
               27-506
               

               Cow position:
               chr1:44769021-44769518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 81
               

               Conread position:
               28-221
               

               Cow position:
               chr1:261395-261598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               163
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               94, 75
               

               Conread position:
               28-347
               

               Cow position:
               chr1:26729799-26729489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               47, 5
               

               Conread position:
               28-382
               

               Cow position:
               chr1:79164997-79165366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               29-196
               

               Cow position:
               chr1:71665846-71666014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               46, 79
               

               Conread position:
               29-196
               

               Cow position:
               chr1:72684777-72684615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               98, 5
               

               Conread position:
               29-506
               

               Cow position:
               chr1:92434086-92433617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 77
               

               Conread position:
               33-316
               

               Cow position:
               chr1:28563487-28563771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               93, 72
               

               Conread position:
               33-327
               

               Cow position:
               chr1:98311154-98310847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               29, 79
               

               Conread position:
               33-355
               

               Cow position:
               chr1:56477674-56477348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               42, 77
               

               Conread position:
               33-357
               

               Cow position:
               chr1:89485662-89485342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               234
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               42, 77
               

               Conread position:
               33-406
               

               Cow position:
               chr1:57297564-57297198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               39, 75
               

               Conread position:
               33-485
               

               Cow position:
               chr1:31413890-31414348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 77
               

               Conread position:
               34-463
               

               Cow position:
               chr1:21508474-21508032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 77
               

               Conread position:
               34-505
               

               Cow position:
               chr1:78092118-78091629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 79
               

               Conread position:
               34-506
               

               Cow position:
               chr1:34686261-34685796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 39
               

               Conread position:
               34-506
               

               Cow position:
               chr1:63390686-63391176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 75
               

               Conread position:
               34-506
               

               Cow position:
               chr1:73584329-73584826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 78
               

               Conread position:
               34-506
               

               Cow position:
               chr1:97761681-97761225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 74
               

               Conread position:
               35-322
               

               Cow position:
               chr1:86482984-86482695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               39, 70
               

               Conread position:
               35-367
               

               Cow position:
               chr1:27359017-27358684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               230
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               39, 69
               

               Conread position:
               35-484
               

               Cow position:
               chr1:92963475-92963008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               320
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               82, 43
               

               Conread position:
               36-195
               

               Cow position:
               chr1:61560644-61560807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               34, 71
               

               Conread position:
               36-227
               

               Cow position:
               chr1:92580837-92580636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               39, 77
               

               Conread position:
               36-309
               

               Cow position:
               chr1:6788204-6788485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               38, 72
               

               Conread position:
               36-328
               

               Cow position:
               chr1:3429430-3429723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               38, 75
               

               Conread position:
               36-449
               

               Cow position:
               chr1:70297357-70296921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               306
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               38, 79
               

               Conread position:
               36-494
               

               Cow position:
               chr1:91816692-91817163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 77
               

               Conread position:
               36-506
               

               Cow position:
               chr1:61735356-61735846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 77
               

               Conread position:
               38-240
               

               Cow position:
               chr1:87440544-87440330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               170
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               34, 14
               

               Conread position:
               39-191
               

               Cow position:
               chr1:80904843-80904689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               97, 66
               

               Conread position:
               39-196
               

               Cow position:
               chr1:51044228-51044387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               34, 72
               

               Conread position:
               39-309
               

               Cow position:
               chr1:89498029-89497770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 66
               

               Conread position:
               39-349
               

               Cow position:
               chr1:75383053-75382756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               215
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               133, 40
               

               Conread position:
               39-366
               

               Cow position:
               chr1:65103696-65103377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               41, 70
               

               Conread position:
               40-299
               

               Cow position:
               chr1:42398116-42398382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               31, 71
               

               Conread position:
               43-337
               

               Cow position:
               chr1:94404283-94403992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               185
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               153, 63
               

               Conread position:
               44-382
               

               Cow position:
               chr1:635265-634915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               249
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               31, 69
               

               Conread position:
               47-361
               

               Cow position:
               chr1:1916159-1916489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               30, 64
               

               Conread position:
               50-386
               

               Cow position:
               chr1:32341144-32341487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               25, 54
               

               Conread position:
               51-240
               

               Cow position:
               chr1:85301481-85301280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               24, 55
               

               Conread position:
               54-296
               

               Cow position:
               chr1:24445567-24445811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               26, 54
               

               Conread position:
               57-366
               

               Cow position:
               chr1:57635517-57635209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               175, 50
               

               Conread position:
               57-498
               

               Cow position:
               chr1:97755578-97755123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               310
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               21, 53
               

               Conread position:
               57-506
               

               Cow position:
               chr1:44155308-44154863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 53
               

               Conread position:
               57-506
               

               Cow position:
               chr1:61564851-61564389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 40
               

               Conread position:
               60-452
               

               Cow position:
               chr1:22745680-22745277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               273
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               10, 51
               

               Conread position:
               62-342
               

               Cow position:
               chr1:62920217-62919945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               62, 5
               

               Conread position:
               63-197
               

               Cow position:
               chr1:58438950-58439084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               102
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               65, 42
               

               Conread position:
               69-198
               

               Cow position:
               chr1:41695645-41695516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               71, 37
               

               Conread position:
               69-298
               

               Cow position:
               chr1:99039312-99039537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               116, 37
               

               Conread position:
               69-366
               

               Cow position:
               chr1:45535750-45535444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               218
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               130, 38
               

               Conread position:
               69-438
               

               Cow position:
               chr1:98563205-98562824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 38
               

               Conread position:
               69-506
               

               Cow position:
               chr1:95017486-95017921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 37
               

               Conread position:
               69-506
               

               Cow position:
               chr1:99807673-99808139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               323
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               45, 38
               

               Conread position:
               73-407
               

               Cow position:
               chr1:22448542-22448889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               255
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               62, 34
               

               Conread position:
               74-417
               

               Cow position:
               chr1:4573558-4573218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               124, 34
               

               Conread position:
               74-504
               

               Cow position:
               chr1:40962838-40963282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               296
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               47, 34
               

               Conread position:
               78-494
               

               Cow position:
               chr1:80870147-80869716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 13
               

               Conread position:
               83-367
               

               Cow position:
               chr1:31871458-31871161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               206
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               83-385
               

               Cow position:
               chr1:99095391-99095086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               113, 10
               

               Conread position:
               83-410
               

               Cow position:
               chr1:47009062-47008724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               42, 24
               

               Conread position:
               84-469
               

               Cow position:
               chr1:1403453-1403830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 22
               

               Conread position:
               84-495
               

               Cow position:
               chr1:3034971-3035383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 22
               

               Conread position:
               85-328
               

               Cow position:
               chr1:53540418-53540176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               64, 22
               

               Conread position:
               87-506
               

               Cow position:
               chr1:29671496-29671914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 19
               

               Conread position:
               92-366
               

               Cow position:
               chr1:63905454-63905732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               106, 22
               

               Conread position:
               93-403
               

               Cow position:
               chr1:33811949-33811633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               59, 13
               

               Conread position:
               93-506
               

               Cow position:
               chr1:71946351-71946768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               94-506
               

               Cow position:
               chr1:3340956-3340521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 13
               

               Conread position:
               96-505
               

               Cow position:
               chr1:12595885-12596307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 10
               

               Conread position:
               97-429
               

               Cow position:
               chr1:57900726-57901064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 9
               

               Conread position:
               105-366
               

               Cow position:
               chr1:100537811-100537552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               78, 29
               

               Conread position:
               106-496
               

               Cow position:
               chr1:41004353-41004759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 147
               

               Conread position:
               107-337
               

               Cow position:
               chr1:71818455-71818684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               88, 40
               

               Conread position:
               107-359
               

               Cow position:
               chr1:75967437-75967185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               139, 42
               

               Conread position:
               107-366
               

               Cow position:
               chr1:56408625-56408355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               32, 12
               

               Conread position:
               108-506
               

               Cow position:
               chr1:666371-665967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 41
               

               Conread position:
               108-506
               

               Cow position:
               chr1:76222683-76223095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 91
               

               Conread position:
               109-320
               

               Cow position:
               chr1:98348309-98348513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               44, 127
               

               Conread position:
               112-367
               

               Cow position:
               chr1:19998040-19998294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               78, 11
               

               Conread position:
               117-483
               

               Cow position:
               chr1:50634401-50634792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               284
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               12, 140
               

               Conread position:
               121-400
               

               Cow position:
               chr1:87888395-87888108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               35, 97
               

               Conread position:
               125-306
               

               Cow position:
               chr1:102113115-102113301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               79, 95
               

               Conread position:
               126-484
               

               Cow position:
               chr1:72181814-72181459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               54, 120
               

               Conread position:
               127-467
               

               Cow position:
               chr1:70933409-70933741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               198, 26
               

               Conread position:
               132-476
               

               Cow position:
               chr1:9443866-9444216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               15, 24
               

               Conread position:
               133-366
               

               Cow position:
               chr1:86614842-86614608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               15, 22
               

               Conread position:
               136-484
               

               Cow position:
               chr1:46821971-46821631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 57
               

               Conread position:
               139-453
               

               Cow position:
               chr1:100770772-100771085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               14, 59
               

               Conread position:
               140-360
               

               Cow position:
               chr1:14379559-14379782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               7, 59
               

               Conread position:
               155-506
               

               Cow position:
               chr1:21093052-21092688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 43
               

               Conread position:
               171-469
               

               Cow position:
               chr1:23624104-23623786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 23
               

               Conread position:
               171-495
               

               Cow position:
               chr1:36613345-36613667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 14
               

               Conread position:
               183-505
               

               Cow position:
               chr1:61724113-61724423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 15
               

               Conread position:
               187-352
               

               Cow position:
               chr1:56618762-56618921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               143, 11
               

               Conread position:
               187-496
               

               Cow position:
               chr1:18223961-18224277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               141, 43
               

               Conread position:
               188-476
               

               Cow position:
               chr1:52863104-52863393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               128, 45
               

               Conread position:
               189-484
               

               Cow position:
               chr1:98494339-98494054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               219
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               138, 44
               

               Conread position:
               194-324
               

               Cow position:
               chr1:99792723-99792601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               194-346
               

               Cow position:
               chr1:62996402-62996257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               134, 45
               

               Conread position:
               194-352
               

               Cow position:
               chr1:30504379-30504227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               133, 34
               

               Conread position:
               194-506
               

               Cow position:
               chr1:40062360-40062042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 42
               

               Conread position:
               195-354
               

               Cow position:
               chr1:26159521-26159678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               135, 46
               

               Conread position:
               195-366
               

               Cow position:
               chr1:96192956-96193132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               61, 7
               

               Conread position:
               195-381
               

               Cow position:
               chr1:55686310-55686494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               122, 44
               

               Conread position:
               195-503
               

               Cow position:
               chr1:58439143-58439437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               234
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               140, 43
               

               Conread position:
               195-506
               

               Cow position:
               chr1:92198678-92198373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               230
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               132, 35
               

               Conread position:
               196-498
               

               Cow position:
               chr1:53650800-53650511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 54
               

               Conread position:
               197-497
               

               Cow position:
               chr1:41138431-41138748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 72
               

               Conread position:
               198-498
               

               Cow position:
               chr1:99104980-99105284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               131, 41
               

               Conread position:
               200-506
               

               Cow position:
               chr1:85865685-85865394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               126, 41
               

               Conread position:
               201-422
               

               Cow position:
               chr1:81579667-81579439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               126, 40
               

               Conread position:
               238-506
               

               Cow position:
               chr1:28277523-28277246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               89, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-367
Cow position:	chr1:55146910-55146542 (view UCSC Genome Browser custom track)
Alignm length:	387
Alignm identity:	270
Alignm E-value:	3e-39
Alignm gaps (pig, cow):	74, 18
Conread position:	1-489
Cow position:	chr1:51968576-51968083 (view UCSC Genome Browser custom track)
Alignm length:	507
Alignm identity:	344
Alignm E-value:	0
Alignm gaps (pig, cow):	74, 103
Conread position:	10-192
Cow position:	chr1:6752126-6752311 (view UCSC Genome Browser custom track)
Alignm length:	187
Alignm identity:	134
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	61, 132
Conread position:	10-348
Cow position:	chr1:71078855-71079193 (view UCSC Genome Browser custom track)
Alignm length:	345
Alignm identity:	246
Alignm E-value:	0
Alignm gaps (pig, cow):	65, 96
Conread position:	10-356
Cow position:	chr1:81563850-81563485 (view UCSC Genome Browser custom track)
Alignm length:	369
Alignm identity:	269
Alignm E-value:	0
Alignm gaps (pig, cow):	65, 99
Conread position:	10-483
Cow position:	chr1:68855270-68854801 (view UCSC Genome Browser custom track)
Alignm length:	489
Alignm identity:	352
Alignm E-value:	0
Alignm gaps (pig, cow):	64, 98
Conread position:	11-104
Cow position:	chr1:44269193-44269099 (view UCSC Genome Browser custom track)
Alignm length:	95
Alignm identity:	81
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	13, 0
Conread position:	11-123
Cow position:	chr1:52429556-52429670 (view UCSC Genome Browser custom track)
Alignm length:	116
Alignm identity:	95
Alignm E-value:	6e-23
Alignm gaps (pig, cow):	59, 97
Conread position:	11-126
Cow position:	chr1:759314-759431 (view UCSC Genome Browser custom track)
Alignm length:	119
Alignm identity:	96
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	60, 97
Conread position:	11-132
Cow position:	chr1:45315532-45315655 (view UCSC Genome Browser custom track)
Alignm length:	125
Alignm identity:	101
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	58, 97
Conread position:	11-134
Cow position:	chr1:55753112-55753236 (view UCSC Genome Browser custom track)
Alignm length:	127
Alignm identity:	102
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	59, 88
Conread position:	11-136
Cow position:	chr1:42537218-42537346 (view UCSC Genome Browser custom track)
Alignm length:	131
Alignm identity:	105
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	55, 22
Conread position:	11-139
Cow position:	chr1:19962154-19962026 (view UCSC Genome Browser custom track)
Alignm length:	130
Alignm identity:	104
Alignm E-value:	8e-26
Alignm gaps (pig, cow):	117, 94
Conread position:	11-143
Cow position:	chr1:62034725-62034859 (view UCSC Genome Browser custom track)
Alignm length:	137
Alignm identity:	106
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	59, 40
Conread position:	11-146
Cow position:	chr1:67654216-67654353 (view UCSC Genome Browser custom track)
Alignm length:	139
Alignm identity:	105
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	60, 97
Conread position:	11-148
Cow position:	chr1:41027178-41027041 (view UCSC Genome Browser custom track)
Alignm length:	140
Alignm identity:	114
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	63, 96
Conread position:	11-149
Cow position:	chr1:48214054-48214191 (view UCSC Genome Browser custom track)
Alignm length:	139
Alignm identity:	113
Alignm E-value:	4e-31
Alignm gaps (pig, cow):	94, 0
Conread position:	11-152
Cow position:	chr1:8670877-8670734 (view UCSC Genome Browser custom track)
Alignm length:	146
Alignm identity:	111
Alignm E-value:	5e-22
Alignm gaps (pig, cow):	9, 23
Conread position:	11-155
Cow position:	chr1:62997900-62997756 (view UCSC Genome Browser custom track)
Alignm length:	146
Alignm identity:	115
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	128, 94
Conread position:	11-161
Cow position:	chr1:97833811-97833663 (view UCSC Genome Browser custom track)
Alignm length:	152
Alignm identity:	115
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	131, 90