Cow genome map

Conread name: Thy1-THY010121B08

Conread position: 10-506
Cow position: chr5:64523738-64524266 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 100

Conread position: 11-104
Cow position: chr5:34288129-34288222 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 85
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 11-113
Cow position: chr5:55850005-55849905 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 11-125
Cow position: chr5:2240867-2240981 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 78

Conread position: 11-130
Cow position: chr5:9233864-9233986 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 8, 98

Conread position: 11-136
Cow position: chr5:69383379-69383252 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 62, 97

Conread position: 11-138
Cow position: chr5:50824716-50824587 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 59, 97

Conread position: 11-141
Cow position: chr5:24069514-24069382 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 80, 65

Conread position: 11-143
Cow position: chr5:60189117-60188976 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 100

Conread position: 11-145
Cow position: chr5:60523856-60523721 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 99, 94

Conread position: 11-146
Cow position: chr5:9170459-9170593 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 64, 43

Conread position: 11-146
Cow position: chr5:73253531-73253398 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 11-147
Cow position: chr5:56334388-56334522 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 114, 14

Conread position: 11-148
Cow position: chr5:17104974-17104838 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 11-156
Cow position: chr5:45186996-45187142 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 22

Conread position: 11-159
Cow position: chr5:61875661-61875517 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 11-167
Cow position: chr5:26549016-26549175 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 60, 97

Conread position: 11-169
Cow position: chr5:22795338-22795178 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 116, 94

Conread position: 11-169
Cow position: chr5:57686613-57686776 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 58, 97

Conread position: 11-173
Cow position: chr5:71724423-71724261 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 40

Conread position: 11-174
Cow position: chr5:35982613-35982781 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 137
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 46, 98

Conread position: 11-175
Cow position: chr5:49341925-49342090 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 62, 97

Conread position: 11-175
Cow position: chr5:69099844-69099677 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 96

Conread position: 11-178
Cow position: chr5:72006366-72006537 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 97

Conread position: 11-181
Cow position: chr5:55795842-55796012 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 23

Conread position: 11-188
Cow position: chr5:67118544-67118364 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 62, 97

Conread position: 11-191
Cow position: chr5:40242167-40241985 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 63, 34

Conread position: 11-195
Cow position: chr5:45420013-45420195 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 64, 97

Conread position: 11-196
Cow position: chr5:13717446-13717629 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 26

Conread position: 11-196
Cow position: chr5:17554909-17555094 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 61, 19

Conread position: 11-196
Cow position: chr5:18289246-18289068 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 11-196
Cow position: chr5:23678579-23678764 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 134, 22

Conread position: 11-196
Cow position: chr5:29912544-29912357 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 60, 18

Conread position: 11-196
Cow position: chr5:35976634-35976459 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 27

Conread position: 11-196
Cow position: chr5:53710565-53710752 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 64, 100

Conread position: 11-196
Cow position: chr5:54375378-54375569 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 152
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 64, 97

Conread position: 11-196
Cow position: chr5:59626848-59627036 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 64, 14

Conread position: 11-196
Cow position: chr5:62378904-62378729 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 94, 0

Conread position: 11-196
Cow position: chr5:66551772-66551961 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 61, 98

Conread position: 11-196
Cow position: chr5:72951968-72951779 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 59, 97

Conread position: 11-197
Cow position: chr5:26150297-26150484 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 145
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 64, 97

Conread position: 11-199
Cow position: chr5:64591971-64592160 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 59, 97

Conread position: 11-201
Cow position: chr5:63150045-63150234 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 74

Conread position: 11-205
Cow position: chr5:17602081-17602272 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 64, 75

Conread position: 11-224
Cow position: chr5:35784865-35785079 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 33

Conread position: 11-225
Cow position: chr5:36038877-36039108 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 44, 98

Conread position: 11-229
Cow position: chr5:12434667-12434427 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 63, 97

Conread position: 11-230
Cow position: chr5:14920806-14921039 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 64, 98

Conread position: 11-231
Cow position: chr5:7698124-7697895 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 31, 41

Conread position: 11-231
Cow position: chr5:60016289-60016057 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 186, 94

Conread position: 11-234
Cow position: chr5:44726210-44726439 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 64, 98

Conread position: 11-237
Cow position: chr5:22667195-22666977 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 63, 98

Conread position: 11-239
Cow position: chr5:58446931-58446685 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 59, 97

Conread position: 11-248
Cow position: chr5:45574744-45574489 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 64, 243

Conread position: 11-254
Cow position: chr5:64026895-64027140 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 59, 97

Conread position: 11-257
Cow position: chr5:15721950-15722199 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 64, 98

Conread position: 11-261
Cow position: chr5:12673354-12673598 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 195
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 183, 82

Conread position: 11-266
Cow position: chr5:25035134-25035383 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 120, 91

Conread position: 11-271
Cow position: chr5:7755446-7755710 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 59, 22

Conread position: 11-273
Cow position: chr5:20422069-20422337 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 163, 97

Conread position: 11-278
Cow position: chr5:45397693-45397424 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 178, 40

Conread position: 11-289
Cow position: chr5:42050676-42050391 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 64, 97

Conread position: 11-296
Cow position: chr5:54060400-54060110 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 9, 23

Conread position: 11-299
Cow position: chr5:30949791-30950086 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 64, 98

Conread position: 11-302
Cow position: chr5:56317413-56317125 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 114, 62

Conread position: 11-303
Cow position: chr5:23529159-23529449 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 194
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 70, 22

Conread position: 11-303
Cow position: chr5:56014855-56014564 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 225
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 58, 97

Conread position: 11-304
Cow position: chr5:30629033-30629330 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 47, 7

Conread position: 11-311
Cow position: chr5:44028183-44028480 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 120, 62

Conread position: 11-316
Cow position: chr5:34625084-34624785 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 62, 97

Conread position: 11-317
Cow position: chr5:46512645-46512951 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 233
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 64, 43

Conread position: 11-317
Cow position: chr5:61810895-61810608 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 208
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 198, 65

Conread position: 11-322
Cow position: chr5:48009735-48010036 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 60, 95

Conread position: 11-323
Cow position: chr5:4221102-4220790 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 239
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 23

Conread position: 11-323
Cow position: chr5:69461459-69461144 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 32

Conread position: 11-326
Cow position: chr5:22643108-22643411 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 9, 23

Conread position: 11-328
Cow position: chr5:7044581-7044905 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 95

Conread position: 11-328
Cow position: chr5:34562141-34561813 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 98

Conread position: 11-328
Cow position: chr5:44446741-44447082 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 97

Conread position: 11-328
Cow position: chr5:62142800-62142475 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 225
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 60, 97

Conread position: 11-328
Cow position: chr5:64176002-64176316 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 97

Conread position: 11-328
Cow position: chr5:69731624-69731322 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 114, 92

Conread position: 11-336
Cow position: chr5:1687991-1688319 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 211
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 125, 68

Conread position: 11-336
Cow position: chr5:57737223-57736908 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 59, 97

Conread position: 11-337
Cow position: chr5:4280572-4280256 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 230
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 70, 131

Conread position: 11-337
Cow position: chr5:39442421-39442086 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 237
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 7, 17

Conread position: 11-339
Cow position: chr5:458612-458275 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 239
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 62, 46

Conread position: 11-339
Cow position: chr5:23168702-23169025 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 98

Conread position: 11-348
Cow position: chr5:16025344-16025682 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 257
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 10, 23

Conread position: 11-350
Cow position: chr5:35969656-35969323 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 252
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 9, 23

Conread position: 11-351
Cow position: chr5:27411277-27411614 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 225
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 30

Conread position: 11-352
Cow position: chr5:27306428-27306093 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 96

Conread position: 11-353
Cow position: chr5:1247387-1247050 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 244
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 134, 97

Conread position: 11-353
Cow position: chr5:7723789-7723446 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 251
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 9, 23

Conread position: 11-354
Cow position: chr5:15426662-15426301 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 269
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 64, 95

Conread position: 11-356
Cow position: chr5:20779274-20779609 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 244
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 81, 67

Conread position: 11-356
Cow position: chr5:22242641-22243014 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 105

Conread position: 11-356
Cow position: chr5:40109616-40109272 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 51

Conread position: 11-356
Cow position: chr5:43929612-43929963 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 83

Conread position: 11-359
Cow position: chr5:71454488-71454828 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 254
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 23

Conread position: 11-360
Cow position: chr5:6683243-6683581 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 245
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 199, 62

Conread position: 11-360
Cow position: chr5:38833245-38832884 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 92

Conread position: 11-361
Cow position: chr5:4031862-4032223 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 258
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 9, 24

Conread position: 11-361
Cow position: chr5:24996099-24996458 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 47

Conread position: 11-361
Cow position: chr5:43992448-43992091 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 256
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 10, 23

Conread position: 11-362
Cow position: chr5:50943032-50943385 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 99

Conread position: 11-362
Cow position: chr5:69337944-69337597 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 97

Conread position: 11-363
Cow position: chr5:17062958-17063330 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 253
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 63, 6

Conread position: 11-363
Cow position: chr5:29353003-29353365 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 80, 10

Conread position: 11-365
Cow position: chr5:30253865-30253507 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 95

Conread position: 11-366
Cow position: chr5:33537998-33537655 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 104

Conread position: 11-366
Cow position: chr5:37814750-37814384 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 243
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 62, 98

Conread position: 11-366
Cow position: chr5:54350237-54350600 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 254
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 64, 100

Conread position: 11-367
Cow position: chr5:11229549-11229914 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 65

Conread position: 11-367
Cow position: chr5:11668061-11668418 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 247
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 59, 95

Conread position: 11-367
Cow position: chr5:30845234-30844872 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 94

Conread position: 11-367
Cow position: chr5:35685059-35684694 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 94

Conread position: 11-367
Cow position: chr5:52000342-51999979 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 11, 23

Conread position: 11-382
Cow position: chr5:63992048-63992421 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 97

Conread position: 11-382
Cow position: chr5:64139684-64139306 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 97

Conread position: 11-383
Cow position: chr5:67244042-67243665 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 69

Conread position: 11-386
Cow position: chr5:57626912-57626550 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 38

Conread position: 11-397
Cow position: chr5:27419605-27419993 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 274
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 63, 97

Conread position: 11-400
Cow position: chr5:12351684-12352061 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 272
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 18

Conread position: 11-403
Cow position: chr5:63987322-63987729 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 287
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 9, 24

Conread position: 11-424
Cow position: chr5:50533264-50533683 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 53

Conread position: 11-436
Cow position: chr5:5110945-5111392 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 103

Conread position: 11-438
Cow position: chr5:60715244-60715672 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 301
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 62, 93

Conread position: 11-447
Cow position: chr5:68718991-68718564 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 297
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 180, 94

Conread position: 11-449
Cow position: chr5:26990512-26990070 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 319
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 128, 16

Conread position: 11-449
Cow position: chr5:44796609-44797043 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 23

Conread position: 11-464
Cow position: chr5:20783746-20783284 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 86

Conread position: 11-468
Cow position: chr5:6896003-6896471 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 315
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 114, 68

Conread position: 11-476
Cow position: chr5:39258629-39258199 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 94

Conread position: 11-483
Cow position: chr5:44993925-44994407 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 64

Conread position: 11-484
Cow position: chr5:41609408-41608950 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 68

Conread position: 11-487
Cow position: chr5:50600172-50599700 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 101

Conread position: 11-489
Cow position: chr5:57934984-57935479 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 98

Conread position: 11-495
Cow position: chr5:29771652-29771144 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 99

Conread position: 11-498
Cow position: chr5:4710028-4710521 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 96

Conread position: 11-498
Cow position: chr5:56524298-56523797 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 98

Conread position: 11-503
Cow position: chr5:19813096-19813602 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 98

Conread position: 11-504
Cow position: chr5:15598114-15598616 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 34

Conread position: 11-504
Cow position: chr5:43923038-43923532 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 22

Conread position: 11-504
Cow position: chr5:64321873-64321371 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 20

Conread position: 11-504
Cow position: chr5:72564888-72564376 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 23

Conread position: 11-505
Cow position: chr5:27171869-27172331 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 349
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 23

Conread position: 11-505
Cow position: chr5:44053931-44054418 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 42

Conread position: 11-505
Cow position: chr5:65776260-65776781 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 103

Conread position: 11-506
Cow position: chr5:3582684-3582192 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 95

Conread position: 11-506
Cow position: chr5:4166764-4166287 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 24

Conread position: 11-506
Cow position: chr5:4218981-4218498 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 16

Conread position: 11-506
Cow position: chr5:12322683-12323179 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 94

Conread position: 11-506
Cow position: chr5:15364006-15363508 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 97

Conread position: 11-506
Cow position: chr5:16893647-16894154 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 97

Conread position: 11-506
Cow position: chr5:17086897-17087408 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 50

Conread position: 11-506
Cow position: chr5:21617582-21617080 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 97

Conread position: 11-506
Cow position: chr5:21828991-21828471 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 11-506
Cow position: chr5:26467752-26467237 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 100

Conread position: 11-506
Cow position: chr5:27155129-27154639 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 39

Conread position: 11-506
Cow position: chr5:29828170-29827668 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 16

Conread position: 11-506
Cow position: chr5:29903399-29903907 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 97

Conread position: 11-506
Cow position: chr5:34463456-34463969 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 22

Conread position: 11-506
Cow position: chr5:35826726-35826216 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 97

Conread position: 11-506
Cow position: chr5:37646205-37645680 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 23

Conread position: 11-506
Cow position: chr5:41604747-41604221 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 34

Conread position: 11-506
Cow position: chr5:44752183-44752704 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 23

Conread position: 11-506
Cow position: chr5:45845564-45846076 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 14

Conread position: 11-506
Cow position: chr5:46509741-46510253 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 97

Conread position: 11-506
Cow position: chr5:50821907-50821403 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 97

Conread position: 11-506
Cow position: chr5:55177010-55176501 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 46

Conread position: 11-506
Cow position: chr5:55232689-55233153 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 95

Conread position: 11-506
Cow position: chr5:62172536-62172021 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 23

Conread position: 11-506
Cow position: chr5:64758643-64759114 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 23

Conread position: 11-506
Cow position: chr5:66257760-66257263 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 94

Conread position: 11-506
Cow position: chr5:74643554-74644044 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 91

Conread position: 12-130
Cow position: chr5:26253050-26253170 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 58, 96

Conread position: 12-143
Cow position: chr5:46540933-46541065 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 94

Conread position: 12-164
Cow position: chr5:45574242-45574398 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 96

Conread position: 12-190
Cow position: chr5:56338898-56339074 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 95

Conread position: 12-196
Cow position: chr5:69636347-69636173 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 56, 96

Conread position: 12-229
Cow position: chr5:38076361-38076591 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 6

Conread position: 12-232
Cow position: chr5:60183928-60183690 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 60, 99

Conread position: 12-234
Cow position: chr5:49474422-49474658 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 61, 96

Conread position: 12-328
Cow position: chr5:45804182-45803865 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 21

Conread position: 12-347
Cow position: chr5:47696327-47696668 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 236
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 132, 66

Conread position: 12-348
Cow position: chr5:56028418-56028751 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 75

Conread position: 12-358
Cow position: chr5:56070982-56070622 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 99

Conread position: 12-366
Cow position: chr5:34301039-34300686 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 249
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 36, 70

Conread position: 12-424
Cow position: chr5:6503759-6504169 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 274
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 62, 15

Conread position: 12-438
Cow position: chr5:57327923-57327482 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 293
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 14

Conread position: 12-448
Cow position: chr5:61726087-61725644 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 15

Conread position: 12-469
Cow position: chr5:28927471-28927945 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 56

Conread position: 12-506
Cow position: chr5:35208383-35207876 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 16

Conread position: 12-506
Cow position: chr5:60210021-60210524 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 20

Conread position: 13-136
Cow position: chr5:51298591-51298716 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 94

Conread position: 13-144
Cow position: chr5:34914931-34915064 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 93

Conread position: 13-173
Cow position: chr5:20288141-20288303 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 60, 96

Conread position: 13-173
Cow position: chr5:61102838-61102675 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 62, 97

Conread position: 13-176
Cow position: chr5:56212027-56211859 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 93

Conread position: 13-178
Cow position: chr5:56517226-56517058 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 57, 95

Conread position: 13-189
Cow position: chr5:24136836-24136658 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 62, 29

Conread position: 13-196
Cow position: chr5:1461211-1461025 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 60, 95

Conread position: 13-196
Cow position: chr5:19752424-19752243 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 112, 57

Conread position: 13-196
Cow position: chr5:57767863-57768043 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 95

Conread position: 13-196
Cow position: chr5:63234707-63234888 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 132, 60

Conread position: 13-199
Cow position: chr5:70951767-70951942 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 184, 37

Conread position: 13-249
Cow position: chr5:41713421-41713174 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 17, 21

Conread position: 13-249
Cow position: chr5:57101659-57101903 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 187
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 32, 21

Conread position: 13-298
Cow position: chr5:74580911-74580627 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 95

Conread position: 13-312
Cow position: chr5:59631594-59631301 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 217
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 61, 18

Conread position: 13-329
Cow position: chr5:6286311-6286623 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 57, 95

Conread position: 13-329
Cow position: chr5:57575895-57575569 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 97

Conread position: 13-358
Cow position: chr5:72895808-72895461 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 238
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 55, 95

Conread position: 13-362
Cow position: chr5:65588821-65588477 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 13-364
Cow position: chr5:32338843-32339212 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 263
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 59, 101

Conread position: 13-435
Cow position: chr5:65941128-65941566 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 95

Conread position: 13-505
Cow position: chr5:35763383-35762906 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 12

Conread position: 13-506
Cow position: chr5:6045418-6044901 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 97

Conread position: 13-506
Cow position: chr5:8820891-8821372 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 94

Conread position: 13-506
Cow position: chr5:14314650-14314138 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 94

Conread position: 13-506
Cow position: chr5:30303013-30302513 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 83

Conread position: 13-506
Cow position: chr5:41545771-41546275 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 96

Conread position: 13-506
Cow position: chr5:55068828-55068337 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 95

Conread position: 13-506
Cow position: chr5:57074209-57074701 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 95

Conread position: 14-365
Cow position: chr5:41165209-41164850 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 94

Conread position: 14-395
Cow position: chr5:31640546-31640158 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 94

Conread position: 14-476
Cow position: chr5:58793486-58793969 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 94

Conread position: 14-478
Cow position: chr5:9894002-9894481 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 93

Conread position: 14-506
Cow position: chr5:47601933-47601426 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 95

Conread position: 15-168
Cow position: chr5:30233027-30232871 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 18

Conread position: 15-231
Cow position: chr5:42670744-42670966 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 55, 42

Conread position: 15-240
Cow position: chr5:49440751-49440991 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 60, 94

Conread position: 15-261
Cow position: chr5:60599086-60599325 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 6

Conread position: 15-296
Cow position: chr5:16214807-16214524 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 198
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 5, 19

Conread position: 15-298
Cow position: chr5:65967611-65967897 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 56, 94

Conread position: 15-309
Cow position: chr5:51935309-51935006 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 203
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 43

Conread position: 15-311
Cow position: chr5:65136383-65136105 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 76

Conread position: 15-338
Cow position: chr5:51053529-51053856 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 239
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 60, 111

Conread position: 15-367
Cow position: chr5:53835836-53835475 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 39

Conread position: 15-375
Cow position: chr5:28302623-28302990 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 96

Conread position: 15-382
Cow position: chr5:19278586-19278950 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 264
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 58, 95

Conread position: 15-476
Cow position: chr5:67212481-67212026 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 93

Conread position: 15-496
Cow position: chr5:43457411-43457883 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 95

Conread position: 15-498
Cow position: chr5:54311456-54310952 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 95

Conread position: 15-506
Cow position: chr5:8024080-8024575 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 325
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 138, 51

Conread position: 16-194
Cow position: chr5:43403024-43402840 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 53, 92

Conread position: 16-194
Cow position: chr5:65883654-65883833 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 11

Conread position: 16-356
Cow position: chr5:3771965-3771617 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 235
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 57, 88

Conread position: 16-482
Cow position: chr5:30276809-30276334 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 92

Conread position: 16-504
Cow position: chr5:32696704-32697177 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 36

Conread position: 16-505
Cow position: chr5:7193538-7193048 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 93

Conread position: 16-506
Cow position: chr5:14903949-14904441 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 93

Conread position: 17-196
Cow position: chr5:45273383-45273562 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 94

Conread position: 17-366
Cow position: chr5:55966762-55967122 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 92

Conread position: 17-461
Cow position: chr5:52644962-52645420 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 333
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 58, 93

Conread position: 17-506
Cow position: chr5:20407560-20408043 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 91

Conread position: 18-255
Cow position: chr5:59717853-59717616 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 71

Conread position: 18-430
Cow position: chr5:65752977-65752550 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 89

Conread position: 18-498
Cow position: chr5:66366626-66366156 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 89

Conread position: 19-382
Cow position: chr5:42064320-42063946 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 262
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 70, 8

Conread position: 19-468
Cow position: chr5:51357410-51357849 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 33

Conread position: 20-337
Cow position: chr5:40039652-40039975 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 47, 13

Conread position: 20-506
Cow position: chr5:18574287-18573785 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 85

Conread position: 22-178
Cow position: chr5:63192628-63192786 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 131
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 49, 84

Conread position: 22-506
Cow position: chr5:37941694-37942175 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 44

Conread position: 24-186
Cow position: chr5:43408246-43408411 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 10, 85

Conread position: 24-293
Cow position: chr5:46425744-46426011 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 85

Conread position: 24-302
Cow position: chr5:41009893-41010166 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 51, 63

Conread position: 24-305
Cow position: chr5:59115493-59115208 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 69, 54

Conread position: 24-445
Cow position: chr5:39695762-39695331 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 305
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 50, 21

Conread position: 24-445
Cow position: chr5:41598601-41599022 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 64, 21

Conread position: 24-469
Cow position: chr5:35209366-35209820 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 25

Conread position: 24-506
Cow position: chr5:31481259-31480768 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 87

Conread position: 25-506
Cow position: chr5:51151244-51151747 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 66

Conread position: 26-506
Cow position: chr5:59082085-59082577 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 87

Conread position: 33-169
Cow position: chr5:51065631-51065496 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 64

Conread position: 33-173
Cow position: chr5:45148268-45148402 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 33-305
Cow position: chr5:41452570-41452839 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 96, 46

Conread position: 33-362
Cow position: chr5:43737861-43738183 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 213, 40

Conread position: 33-367
Cow position: chr5:4617468-4617137 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 227
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 60, 73

Conread position: 33-498
Cow position: chr5:39447433-39447912 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 76

Conread position: 33-506
Cow position: chr5:9089921-9090390 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 76

Conread position: 34-309
Cow position: chr5:57265803-57266074 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 79

Conread position: 34-351
Cow position: chr5:37425843-37425519 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 40, 18

Conread position: 34-360
Cow position: chr5:65601558-65601227 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 239
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 36, 71

Conread position: 34-389
Cow position: chr5:34050219-34049845 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 41, 79

Conread position: 34-433
Cow position: chr5:3281936-3281519 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 45

Conread position: 34-506
Cow position: chr5:26132996-26133459 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 44

Conread position: 34-506
Cow position: chr5:61840289-61839803 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 76

Conread position: 35-308
Cow position: chr5:69520991-69520715 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 73

Conread position: 35-506
Cow position: chr5:24349207-24348736 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 76

Conread position: 36-328
Cow position: chr5:45409422-45409130 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 200
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 39, 81

Conread position: 36-506
Cow position: chr5:25230913-25231393 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 63

Conread position: 37-249
Cow position: chr5:63865893-63865668 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 99, 69

Conread position: 37-356
Cow position: chr5:66297311-66297009 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 290, 42

Conread position: 37-506
Cow position: chr5:16509204-16508707 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 227

Conread position: 38-505
Cow position: chr5:3242384-3242849 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 37

Conread position: 40-480
Cow position: chr5:38805250-38805705 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 314
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 34, 11

Conread position: 42-303
Cow position: chr5:55956001-55955735 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 68

Conread position: 42-506
Cow position: chr5:63647384-63647852 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 37

Conread position: 43-492
Cow position: chr5:34528639-34528194 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 32

Conread position: 46-495
Cow position: chr5:31144698-31145152 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 62

Conread position: 52-506
Cow position: chr5:34638967-34638508 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 57

Conread position: 53-249
Cow position: chr5:991546-991339 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 22, 56

Conread position: 53-344
Cow position: chr5:63185172-63185469 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 61

Conread position: 57-492
Cow position: chr5:32140630-32141070 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 57

Conread position: 61-317
Cow position: chr5:6670119-6670382 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 47

Conread position: 61-383
Cow position: chr5:1766280-1766600 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 137, 17

Conread position: 69-382
Cow position: chr5:26595040-26595360 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 38

Conread position: 69-506
Cow position: chr5:64823248-64823689 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 38

Conread position: 73-356
Cow position: chr5:56433860-56433572 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 125, 34

Conread position: 73-417
Cow position: chr5:70050800-70050457 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 8

Conread position: 73-506
Cow position: chr5:14420288-14420730 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 33

Conread position: 77-327
Cow position: chr5:60126430-60126179 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 186
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 15, 31

Conread position: 83-506
Cow position: chr5:29681133-29680703 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 286
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 44, 24

Conread position: 84-249
Cow position: chr5:1779237-1779398 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 119, 16

Conread position: 85-484
Cow position: chr5:7921357-7921745 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 284, 22

Conread position: 85-506
Cow position: chr5:44583088-44583499 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 6

Conread position: 87-433
Cow position: chr5:4797278-4797625 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 255
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 107, 20

Conread position: 87-506
Cow position: chr5:7140061-7140469 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 20

Conread position: 87-506
Cow position: chr5:27015725-27015308 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 19

Conread position: 88-506
Cow position: chr5:6086516-6086950 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 18

Conread position: 89-483
Cow position: chr5:42096665-42096266 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 279
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 42, 18

Conread position: 91-449
Cow position: chr5:34916172-34915813 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 15

Conread position: 92-366
Cow position: chr5:37713854-37714144 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 15

Conread position: 93-328
Cow position: chr5:8994526-8994761 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 60, 14

Conread position: 93-483
Cow position: chr5:15882425-15882838 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 278
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 44, 14

Conread position: 97-506
Cow position: chr5:16185125-16184707 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 45

Conread position: 97-506
Cow position: chr5:62826717-62827139 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 5

Conread position: 98-506
Cow position: chr5:19470156-19470568 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 8

Conread position: 99-478
Cow position: chr5:34288435-34288825 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 7

Conread position: 105-461
Cow position: chr5:47313502-47313133 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 258
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 19, 35

Conread position: 108-410
Cow position: chr5:9859686-9860002 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 42, 147

Conread position: 108-413
Cow position: chr5:59443223-59443543 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 45, 135

Conread position: 108-506
Cow position: chr5:6130379-6129971 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 274
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 140, 90

Conread position: 108-506
Cow position: chr5:10261208-10261628 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 25

Conread position: 111-483
Cow position: chr5:31434284-31433916 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 264
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 80, 140

Conread position: 115-445
Cow position: chr5:42748176-42747838 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 234
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 81, 105

Conread position: 120-365
Cow position: chr5:9234062-9234319 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 128-366
Cow position: chr5:56385236-56384988 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 27

Conread position: 134-506
Cow position: chr5:44369884-44369508 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 254
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 193, 23

Conread position: 135-487
Cow position: chr5:29505108-29504739 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 109

Conread position: 141-435
Cow position: chr5:3492188-3491894 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 82, 55

Conread position: 150-356
Cow position: chr5:54530961-54530753 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 27, 57

Conread position: 153-356
Cow position: chr5:6033215-6033009 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 85

Conread position: 161-353
Cow position: chr5:63388767-63388568 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 89

Conread position: 187-476
Cow position: chr5:61030291-61030584 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 46

Conread position: 187-505
Cow position: chr5:19969094-19969416 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 46

Conread position: 191-408
Cow position: chr5:50950484-50950266 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 137, 48

Conread position: 194-360
Cow position: chr5:28324281-28324112 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 97, 39

Conread position: 194-366
Cow position: chr5:32963703-32963868 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 133, 16

Conread position: 194-459
Cow position: chr5:60520089-60519837 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 133, 39

Conread position: 194-506
Cow position: chr5:12672103-12672410 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 45

Conread position: 194-506
Cow position: chr5:55942469-55942782 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 243
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 133, 39

Conread position: 195-379
Cow position: chr5:50975818-50975633 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 81, 44

Conread position: 195-382
Cow position: chr5:37366827-37366633 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 134, 44

Conread position: 195-468
Cow position: chr5:28035636-28035376 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 132, 41

Conread position: 196-380
Cow position: chr5:25935877-25935699 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 132, 35

Conread position: 196-506
Cow position: chr5:14629979-14630293 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 43

Conread position: 198-495
Cow position: chr5:39675524-39675823 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 232
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 129, 41

Show alignments to all cow chromosomes.