Cow genome map
| Conread name: | Thy1-THY010122C11 |
| Conread position: | 137-362 |
| Cow position: | chr12:35807636-35807405 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 137-366 |
| Cow position: | chr12:34089797-34089557 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 139-321 |
| Cow position: | chr12:6117857-6117670 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 46, 85 |
| Conread position: | 145-355 |
| Cow position: | chr12:38484443-38484664 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 41, 134 |
| Conread position: | 145-364 |
| Cow position: | chr12:23379525-23379301 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 146-382 |
| Cow position: | chr12:25312423-25312669 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 40, 124 |
| Conread position: | 148-362 |
| Cow position: | chr12:28559242-28559024 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 148-364 |
| Cow position: | chr12:12938977-12939204 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 37, 125 |
| Conread position: | 148-364 |
| Cow position: | chr12:33458092-33457875 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 148-365 |
| Cow position: | chr12:18417515-18417290 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 148-365 |
| Cow position: | chr12:27038810-27039041 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 148-365 |
| Cow position: | chr12:27055551-27055334 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 135, 38 |
| Conread position: | 148-365 |
| Cow position: | chr12:34103188-34103409 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 148-367 |
| Cow position: | chr12:18769127-18769350 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 148-368 |
| Cow position: | chr12:29483945-29484166 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 149-364 |
| Cow position: | chr12:1223398-1223616 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 150-364 |
| Cow position: | chr12:25619430-25619651 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 150-365 |
| Cow position: | chr12:5539035-5539240 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 150-365 |
| Cow position: | chr12:16851065-16851283 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 151-364 |
| Cow position: | chr12:25456059-25455841 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 151-364 |
| Cow position: | chr12:40910349-40910564 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 119, 10 |
| Conread position: | 151-365 |
| Cow position: | chr12:8868935-8869157 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 151-365 |
| Cow position: | chr12:11696623-11696420 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 34, 120 |
| Conread position: | 151-365 |
| Cow position: | chr12:30919365-30919158 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 152-365 |
| Cow position: | chr12:21829028-21828810 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 152-381 |
| Cow position: | chr12:39753811-39753570 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 153-398 |
| Cow position: | chr12:245750-245997 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 122 |
| Conread position: | 155-364 |
| Cow position: | chr12:1504963-1504753 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 144 |
| Conread position: | 157-366 |
| Cow position: | chr12:3757100-3757310 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 158-309 |
| Cow position: | chr12:27495947-27495787 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 158-366 |
| Cow position: | chr12:35354723-35354509 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 159-310 |
| Cow position: | chr12:35985073-35984912 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 160-353 |
| Cow position: | chr12:29161881-29162073 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 75 |
| Conread position: | 160-365 |
| Cow position: | chr12:41979364-41979573 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 112 |
| Conread position: | 161-310 |
| Cow position: | chr12:21861852-21862003 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 111 |
| Conread position: | 162-364 |
| Cow position: | chr12:27803121-27803323 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 163-363 |
| Cow position: | chr12:794490-794278 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 116 |
| Conread position: | 166-365 |
| Cow position: | chr12:3212256-3212051 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 170-364 |
| Cow position: | chr12:18937326-18937114 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 111 |
| Conread position: | 170-364 |
| Cow position: | chr12:26868870-26869069 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 16, 185 |
| Conread position: | 171-364 |
| Cow position: | chr12:15622523-15622729 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 175-363 |
| Cow position: | chr12:10028814-10028624 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 111, 36 |
| Conread position: | 175-363 |
| Cow position: | chr12:40158319-40158512 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 176-363 |
| Cow position: | chr12:30688260-30688066 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 160 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 178-381 |
| Cow position: | chr12:15938350-15938558 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 100 |
| Conread position: | 185-345 |
| Cow position: | chr12:30064855-30064690 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 101, 84 |
| Conread position: | 186-363 |
| Cow position: | chr12:15232194-15232016 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 82 |
| Conread position: | 199-365 |
| Cow position: | chr12:40824189-40824365 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 203-361 |
| Cow position: | chr12:12331613-12331771 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 66 |
| Conread position: | 207-365 |
| Cow position: | chr12:5797659-5797818 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 207-365 |
| Cow position: | chr12:7131711-7131867 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 57 |
| Conread position: | 217-362 |
| Cow position: | chr12:35718185-35718332 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 234-365 |
| Cow position: | chr12:4341864-4341994 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.