Cow genome map
| Conread name: | Thy1-THY010122C11 |
| Conread position: | 96-365 |
| Cow position: | chr13:37517182-37516915 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 90, 23 |
| Conread position: | 138-362 |
| Cow position: | chr13:9803060-9803278 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 47, 134 |
| Conread position: | 146-345 |
| Cow position: | chr13:4423487-4423279 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 146-365 |
| Cow position: | chr13:3016174-3015947 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 147-342 |
| Cow position: | chr13:34761679-34761869 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 38, 86 |
| Conread position: | 147-362 |
| Cow position: | chr13:60974082-60974296 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 85 |
| Conread position: | 147-366 |
| Cow position: | chr13:46298639-46298419 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 133, 28 |
| Conread position: | 147-367 |
| Cow position: | chr13:17346808-17347030 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 148-276 |
| Cow position: | chr13:57326100-57325972 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 148-278 |
| Cow position: | chr13:548508-548633 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 148-284 |
| Cow position: | chr13:50739169-50739303 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 148-307 |
| Cow position: | chr13:37558281-37558438 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 148-307 |
| Cow position: | chr13:39699809-39699971 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 148-323 |
| Cow position: | chr13:46430302-46430122 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 37, 125 |
| Conread position: | 148-362 |
| Cow position: | chr13:29814542-29814759 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 131 |
| Conread position: | 148-364 |
| Cow position: | chr13:14377979-14378207 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 133 |
| Conread position: | 148-365 |
| Cow position: | chr13:11768040-11767820 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 148-365 |
| Cow position: | chr13:20180417-20180618 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 148-365 |
| Cow position: | chr13:32773357-32773583 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 148-365 |
| Cow position: | chr13:35654092-35653872 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 148-365 |
| Cow position: | chr13:35719138-35718913 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 148-365 |
| Cow position: | chr13:36771420-36771204 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 148-365 |
| Cow position: | chr13:38898243-38898032 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 148-365 |
| Cow position: | chr13:60487460-60487235 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 148-366 |
| Cow position: | chr13:24280248-24280468 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 148-366 |
| Cow position: | chr13:30510060-30510281 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 148-369 |
| Cow position: | chr13:46284614-46284395 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 148-382 |
| Cow position: | chr13:11834477-11834246 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 22, 126 |
| Conread position: | 149-364 |
| Cow position: | chr13:8607516-8607299 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 36, 79 |
| Conread position: | 149-368 |
| Cow position: | chr13:23586121-23586363 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 150-362 |
| Cow position: | chr13:20466280-20466074 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 150-363 |
| Cow position: | chr13:34995321-34995107 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 35, 58 |
| Conread position: | 150-365 |
| Cow position: | chr13:6759791-6759569 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 36, 121 |
| Conread position: | 150-365 |
| Cow position: | chr13:7262395-7262614 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 150-365 |
| Cow position: | chr13:14226932-14227148 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 151-344 |
| Cow position: | chr13:2302836-2302638 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 151-358 |
| Cow position: | chr13:32535663-32535869 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 151-362 |
| Cow position: | chr13:38012360-38012579 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 151-365 |
| Cow position: | chr13:7076262-7076477 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 63 |
| Conread position: | 151-365 |
| Cow position: | chr13:9665065-9665296 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 34, 121 |
| Conread position: | 151-365 |
| Cow position: | chr13:18350844-18351061 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 34, 92 |
| Conread position: | 152-335 |
| Cow position: | chr13:24822758-24822576 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 75 |
| Conread position: | 152-367 |
| Cow position: | chr13:31813883-31814090 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 153-363 |
| Cow position: | chr13:46458626-46458841 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 153-365 |
| Cow position: | chr13:54080806-54080584 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 86, 56 |
| Conread position: | 154-365 |
| Cow position: | chr13:25435113-25434908 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 154-367 |
| Cow position: | chr13:20839572-20839790 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 155-365 |
| Cow position: | chr13:1959018-1959230 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 155-365 |
| Cow position: | chr13:22886988-22886771 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 156-364 |
| Cow position: | chr13:41608357-41608150 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 115 |
| Conread position: | 156-365 |
| Cow position: | chr13:34261241-34261453 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 156-365 |
| Cow position: | chr13:55843489-55843705 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 156-366 |
| Cow position: | chr13:60690718-60690500 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 157-365 |
| Cow position: | chr13:6945377-6945594 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 114 |
| Conread position: | 157-365 |
| Cow position: | chr13:62169537-62169319 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 157-367 |
| Cow position: | chr13:24285569-24285785 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 157-381 |
| Cow position: | chr13:1766780-1767005 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 114 |
| Conread position: | 158-365 |
| Cow position: | chr13:12207055-12207264 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 159-365 |
| Cow position: | chr13:6079406-6079198 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 159-365 |
| Cow position: | chr13:23816738-23816530 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 160-303 |
| Cow position: | chr13:54865018-54864875 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 162-364 |
| Cow position: | chr13:33282020-33282234 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 162-365 |
| Cow position: | chr13:6894107-6894315 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 23, 111 |
| Conread position: | 162-365 |
| Cow position: | chr13:32717859-32717654 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 162-365 |
| Cow position: | chr13:47863685-47863478 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 164-367 |
| Cow position: | chr13:19033570-19033769 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 75 |
| Conread position: | 166-343 |
| Cow position: | chr13:12521767-12521575 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 166-365 |
| Cow position: | chr13:50823532-50823335 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 167-365 |
| Cow position: | chr13:26261779-26261573 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 167-367 |
| Cow position: | chr13:46985036-46985235 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 170-364 |
| Cow position: | chr13:23167074-23166876 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 172-362 |
| Cow position: | chr13:661617-661415 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 175-364 |
| Cow position: | chr13:24539519-24539716 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 8, 96 |
| Conread position: | 175-365 |
| Cow position: | chr13:23444784-23444589 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 175-383 |
| Cow position: | chr13:46501329-46501544 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 176-361 |
| Cow position: | chr13:51940766-51940948 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 8, 59 |
| Conread position: | 185-364 |
| Cow position: | chr13:33875706-33875882 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 37 |
| Conread position: | 185-365 |
| Cow position: | chr13:10658329-10658514 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 71 |
| Conread position: | 186-365 |
| Cow position: | chr13:21288045-21287869 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 189-365 |
| Cow position: | chr13:12989887-12990068 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 190-329 |
| Cow position: | chr13:24767430-24767574 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 31 |
| Conread position: | 191-365 |
| Cow position: | chr13:11290774-11290599 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 95, 8 |
| Conread position: | 206-366 |
| Cow position: | chr13:60694640-60694800 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 61 |
| Conread position: | 210-367 |
| Cow position: | chr13:14220539-14220692 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.