Cow genome map
| Conread name: | Thy1-THY010122C11 |
| Conread position: | 139-363 |
| Cow position: | chr14:35018701-35018479 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 147, 31 |
| Conread position: | 145-364 |
| Cow position: | chr14:34221110-34221332 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 146-364 |
| Cow position: | chr14:10742568-10742776 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 140, 29 |
| Conread position: | 146-367 |
| Cow position: | chr14:7813514-7813295 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 147-362 |
| Cow position: | chr14:15913489-15913276 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 148-330 |
| Cow position: | chr14:26627891-26628080 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 148-331 |
| Cow position: | chr14:14182406-14182587 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 148-360 |
| Cow position: | chr14:14221829-14222049 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 123 |
| Conread position: | 148-361 |
| Cow position: | chr14:46751737-46751952 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 148-362 |
| Cow position: | chr14:24797516-24797301 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 148-362 |
| Cow position: | chr14:47974040-47974255 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 148-363 |
| Cow position: | chr14:13928064-13927843 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 148-364 |
| Cow position: | chr14:6984906-6984689 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 148-364 |
| Cow position: | chr14:8488246-8488463 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 140, 13 |
| Conread position: | 148-364 |
| Cow position: | chr14:21018170-21018390 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 148-364 |
| Cow position: | chr14:25385827-25385613 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 148-365 |
| Cow position: | chr14:4731353-4731580 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 70, 38 |
| Conread position: | 148-365 |
| Cow position: | chr14:18238200-18238418 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 65 |
| Conread position: | 148-365 |
| Cow position: | chr14:34163814-34163596 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 148-365 |
| Cow position: | chr14:39302299-39302084 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 130, 19 |
| Conread position: | 148-365 |
| Cow position: | chr14:47604239-47604024 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 37, 110 |
| Conread position: | 148-370 |
| Cow position: | chr14:35712121-35711897 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 150-306 |
| Cow position: | chr14:41654339-41654185 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 150-357 |
| Cow position: | chr14:15514075-15514290 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 150-364 |
| Cow position: | chr14:7582391-7582163 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 150-364 |
| Cow position: | chr14:21691213-21691002 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 67 |
| Conread position: | 150-365 |
| Cow position: | chr14:10906776-10906996 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 150-365 |
| Cow position: | chr14:25231584-25231370 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 151-363 |
| Cow position: | chr14:18448952-18448732 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 126 |
| Conread position: | 151-365 |
| Cow position: | chr14:31399637-31399854 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 151-365 |
| Cow position: | chr14:35700487-35700710 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 34, 120 |
| Conread position: | 151-365 |
| Cow position: | chr14:37624424-37624209 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 151-365 |
| Cow position: | chr14:37678941-37678719 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 151-366 |
| Cow position: | chr14:17841228-17841007 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 152-365 |
| Cow position: | chr14:37333758-37333970 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 140, 10 |
| Conread position: | 152-367 |
| Cow position: | chr14:10090615-10090836 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 152-367 |
| Cow position: | chr14:39877533-39877328 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 134, 31 |
| Conread position: | 153-364 |
| Cow position: | chr14:12488636-12488424 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 93 |
| Conread position: | 154-364 |
| Cow position: | chr14:29606169-29605958 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 86 |
| Conread position: | 154-365 |
| Cow position: | chr14:12559417-12559206 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 154-365 |
| Cow position: | chr14:25779161-25779373 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 70, 34 |
| Conread position: | 155-365 |
| Cow position: | chr14:23107393-23107605 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 155-366 |
| Cow position: | chr14:25378429-25378211 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 156-365 |
| Cow position: | chr14:8101858-8102057 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 157-365 |
| Cow position: | chr14:31888636-31888427 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 157-378 |
| Cow position: | chr14:46962604-46962831 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 28, 8 |
| Conread position: | 158-365 |
| Cow position: | chr14:9875461-9875668 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 27, 113 |
| Conread position: | 159-365 |
| Cow position: | chr14:34355625-34355423 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 162-351 |
| Cow position: | chr14:36439984-36440173 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 163-361 |
| Cow position: | chr14:43565828-43565624 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 48 |
| Conread position: | 163-364 |
| Cow position: | chr14:22966825-22967030 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 163-366 |
| Cow position: | chr14:47138729-47138519 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 111 |
| Conread position: | 166-366 |
| Cow position: | chr14:12614018-12613822 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 167-365 |
| Cow position: | chr14:20069439-20069242 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 167-381 |
| Cow position: | chr14:47483770-47483991 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 119, 102 |
| Conread position: | 170-341 |
| Cow position: | chr14:6175664-6175838 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 170-365 |
| Cow position: | chr14:24991902-24992091 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 101 |
| Conread position: | 171-362 |
| Cow position: | chr14:12601956-12602152 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 15, 101 |
| Conread position: | 178-363 |
| Cow position: | chr14:40230551-40230360 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 59 |
| Conread position: | 182-363 |
| Cow position: | chr14:30662080-30662264 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 186-363 |
| Cow position: | chr14:42918188-42918367 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 189-355 |
| Cow position: | chr14:35085010-35084844 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 97, 80 |
| Conread position: | 189-367 |
| Cow position: | chr14:4369959-4369779 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 194-365 |
| Cow position: | chr14:1706379-1706555 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 207-362 |
| Cow position: | chr14:24837842-24837684 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 207-367 |
| Cow position: | chr14:3642743-3642577 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 210-366 |
| Cow position: | chr14:8766829-8766977 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 87, 59 |
| Conread position: | 228-367 |
| Cow position: | chr14:28605313-28605456 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 235-364 |
| Cow position: | chr14:40034119-40034248 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 235-365 |
| Cow position: | chr14:2298811-2298682 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 62, 35 |
| Conread position: | 239-365 |
| Cow position: | chr14:19593986-19593861 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.