Cow genome map
| Conread name: | Thy1-THY010122C11 |
| Conread position: | 113-364 |
| Cow position: | chr18:35797611-35797357 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 127-365 |
| Cow position: | chr18:39503711-39503953 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 139-363 |
| Cow position: | chr18:34324993-34325226 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 146-364 |
| Cow position: | chr18:26535557-26535784 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 129 |
| Conread position: | 148-315 |
| Cow position: | chr18:23714935-23715107 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 148-357 |
| Cow position: | chr18:12023687-12023893 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 138, 15 |
| Conread position: | 148-362 |
| Cow position: | chr18:36478151-36477930 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 37, 93 |
| Conread position: | 148-362 |
| Cow position: | chr18:50566824-50566604 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 148-363 |
| Cow position: | chr18:51500125-51500348 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 137, 37 |
| Conread position: | 148-364 |
| Cow position: | chr18:16842111-16842333 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 125 |
| Conread position: | 148-364 |
| Cow position: | chr18:39185560-39185342 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 148-365 |
| Cow position: | chr18:7322688-7322465 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 148-365 |
| Cow position: | chr18:22874828-22874605 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 31, 86 |
| Conread position: | 148-365 |
| Cow position: | chr18:32773827-32773611 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 148-365 |
| Cow position: | chr18:33157765-33157553 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 148-365 |
| Cow position: | chr18:50993320-50993538 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 135, 35 |
| Conread position: | 148-365 |
| Cow position: | chr18:51412319-51412106 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 148-369 |
| Cow position: | chr18:21176138-21175910 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 150-324 |
| Cow position: | chr18:36123489-36123306 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 150-336 |
| Cow position: | chr18:41072957-41072764 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 63 |
| Conread position: | 150-353 |
| Cow position: | chr18:19363885-19363676 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 150-362 |
| Cow position: | chr18:55697073-55697281 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 150-365 |
| Cow position: | chr18:21203322-21203527 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 133, 11 |
| Conread position: | 150-365 |
| Cow position: | chr18:46048709-46048493 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 150-400 |
| Cow position: | chr18:23424868-23424624 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 151-359 |
| Cow position: | chr18:4515976-4515765 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 151-363 |
| Cow position: | chr18:25647303-25647516 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 101 |
| Conread position: | 151-364 |
| Cow position: | chr18:3158651-3158869 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 151-400 |
| Cow position: | chr18:33407562-33407308 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 152-364 |
| Cow position: | chr18:32860590-32860380 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 152-369 |
| Cow position: | chr18:42061021-42060807 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 153-291 |
| Cow position: | chr18:35749034-35749169 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 155-278 |
| Cow position: | chr18:23487971-23487847 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 116 |
| Conread position: | 155-343 |
| Cow position: | chr18:34021329-34021144 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 131, 13 |
| Conread position: | 155-363 |
| Cow position: | chr18:4040123-4039913 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 155-365 |
| Cow position: | chr18:4578523-4578737 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 28, 74 |
| Conread position: | 156-362 |
| Cow position: | chr18:4316253-4316042 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 156-363 |
| Cow position: | chr18:28101575-28101360 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 156-366 |
| Cow position: | chr18:51537715-51537929 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 157-358 |
| Cow position: | chr18:23360577-23360368 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 157-365 |
| Cow position: | chr18:17334469-17334684 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 157-372 |
| Cow position: | chr18:43463465-43463679 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 158-364 |
| Cow position: | chr18:10101432-10101224 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 45 |
| Conread position: | 158-365 |
| Cow position: | chr18:1495246-1495037 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 159-367 |
| Cow position: | chr18:29796484-29796695 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 163-361 |
| Cow position: | chr18:31562458-31562658 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 163-364 |
| Cow position: | chr18:21939299-21939088 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 9, 114 |
| Conread position: | 167-365 |
| Cow position: | chr18:25002947-25003144 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 169-367 |
| Cow position: | chr18:17324647-17324438 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 170-365 |
| Cow position: | chr18:31672581-31672775 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 175-364 |
| Cow position: | chr18:56159386-56159198 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 177-364 |
| Cow position: | chr18:39709812-39709623 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 52 |
| Conread position: | 182-365 |
| Cow position: | chr18:28657993-28658182 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 88, 53 |
| Conread position: | 182-367 |
| Cow position: | chr18:28923922-28924101 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 182-368 |
| Cow position: | chr18:8105029-8105212 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 185-364 |
| Cow position: | chr18:2270592-2270771 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 24 |
| Conread position: | 185-366 |
| Cow position: | chr18:4529423-4529252 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 186-362 |
| Cow position: | chr18:50927649-50927474 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 186-365 |
| Cow position: | chr18:3044353-3044164 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 173 |
| Conread position: | 189-367 |
| Cow position: | chr18:50700580-50700396 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 97, 80 |
| Conread position: | 190-361 |
| Cow position: | chr18:44262534-44262358 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 190-366 |
| Cow position: | chr18:49100462-49100637 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 193-368 |
| Cow position: | chr18:32244115-32244286 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 77 |
| Conread position: | 194-361 |
| Cow position: | chr18:52950165-52950333 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 197-367 |
| Cow position: | chr18:33275212-33275038 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 235-354 |
| Cow position: | chr18:36649834-36649715 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 235-368 |
| Cow position: | chr18:26391550-26391417 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 236-371 |
| Cow position: | chr18:24671820-24671952 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 237-360 |
| Cow position: | chr18:31997338-31997218 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 239-365 |
| Cow position: | chr18:36346200-36346326 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 245-363 |
| Cow position: | chr18:23476822-23476940 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 24 |
Show alignments to all cow chromosomes.