Cow genome map
| Conread name: | Thy1-THY010122C11 |
| Conread position: | 144-352 |
| Cow position: | chr19:39986567-39986776 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 128 |
| Conread position: | 146-284 |
| Cow position: | chr19:25271442-25271579 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 39, 8 |
| Conread position: | 146-358 |
| Cow position: | chr19:28921799-28921584 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 125 |
| Conread position: | 146-366 |
| Cow position: | chr19:48478954-48478726 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 37, 125 |
| Conread position: | 147-364 |
| Cow position: | chr19:55236463-55236247 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 61 |
| Conread position: | 147-365 |
| Cow position: | chr19:4600041-4599837 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 147-365 |
| Cow position: | chr19:38907384-38907602 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 148-268 |
| Cow position: | chr19:1402835-1402958 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 148-309 |
| Cow position: | chr19:7839070-7839235 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 133, 62 |
| Conread position: | 148-338 |
| Cow position: | chr19:43727111-43726925 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 148-362 |
| Cow position: | chr19:7029890-7029675 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 148-362 |
| Cow position: | chr19:47110012-47109796 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 148-363 |
| Cow position: | chr19:32989426-32989635 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 148-364 |
| Cow position: | chr19:2821555-2821332 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 148-364 |
| Cow position: | chr19:33281329-33281124 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 148-364 |
| Cow position: | chr19:36461558-36461773 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 148-365 |
| Cow position: | chr19:6880901-6881125 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 37, 118 |
| Conread position: | 148-365 |
| Cow position: | chr19:19662018-19661795 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 148-365 |
| Cow position: | chr19:36976940-36977163 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 148-365 |
| Cow position: | chr19:54225335-54225545 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 138, 13 |
| Conread position: | 148-366 |
| Cow position: | chr19:32214772-32214559 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 148-381 |
| Cow position: | chr19:31827071-31826846 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 150-343 |
| Cow position: | chr19:19924629-19924829 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 150-360 |
| Cow position: | chr19:44366991-44366785 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 150-364 |
| Cow position: | chr19:19673385-19673172 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 121 |
| Conread position: | 150-364 |
| Cow position: | chr19:31381023-31381243 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 150-365 |
| Cow position: | chr19:18242456-18242668 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 94 |
| Conread position: | 150-365 |
| Cow position: | chr19:30276903-30276699 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 151-363 |
| Cow position: | chr19:2771043-2771253 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 151-365 |
| Cow position: | chr19:1153183-1152975 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 151-365 |
| Cow position: | chr19:13390884-13390673 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 151-367 |
| Cow position: | chr19:2342452-2342228 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 35, 120 |
| Conread position: | 152-284 |
| Cow position: | chr19:56126226-56126095 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 152-360 |
| Cow position: | chr19:1713174-1713385 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 152-363 |
| Cow position: | chr19:30746374-30746155 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 86 |
| Conread position: | 152-364 |
| Cow position: | chr19:33823287-33823071 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 119 |
| Conread position: | 152-367 |
| Cow position: | chr19:42726328-42726106 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 83 |
| Conread position: | 153-361 |
| Cow position: | chr19:56018557-56018769 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 153-364 |
| Cow position: | chr19:30052039-30052246 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 153-366 |
| Cow position: | chr19:44490064-44489844 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 118 |
| Conread position: | 154-364 |
| Cow position: | chr19:38596585-38596369 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 154-365 |
| Cow position: | chr19:35380584-35380795 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 155-338 |
| Cow position: | chr19:24137229-24137038 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 155-365 |
| Cow position: | chr19:2138138-2138352 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 156-363 |
| Cow position: | chr19:40051426-40051630 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 156-364 |
| Cow position: | chr19:35782166-35782379 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 156-365 |
| Cow position: | chr19:53738301-53738088 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 157-365 |
| Cow position: | chr19:22863696-22863909 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 6, 22 |
| Conread position: | 157-365 |
| Cow position: | chr19:31874076-31873870 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 158-310 |
| Cow position: | chr19:15796629-15796476 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 112 |
| Conread position: | 158-365 |
| Cow position: | chr19:35064225-35064431 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 9, 114 |
| Conread position: | 159-365 |
| Cow position: | chr19:20935715-20935509 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 162-365 |
| Cow position: | chr19:25711357-25711577 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 10, 118 |
| Conread position: | 163-369 |
| Cow position: | chr19:43058495-43058283 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 166-368 |
| Cow position: | chr19:20661456-20661665 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 167-291 |
| Cow position: | chr19:22668188-22668063 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 167-365 |
| Cow position: | chr19:41212096-41212299 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 167-365 |
| Cow position: | chr19:43517187-43516989 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 170-279 |
| Cow position: | chr19:5279820-5279707 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 170-364 |
| Cow position: | chr19:27348321-27348508 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 171-366 |
| Cow position: | chr19:18788153-18788352 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 172-368 |
| Cow position: | chr19:39876571-39876765 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 104 |
| Conread position: | 175-365 |
| Cow position: | chr19:9703890-9704077 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 10, 67 |
| Conread position: | 176-362 |
| Cow position: | chr19:25637551-25637744 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 179-363 |
| Cow position: | chr19:38340037-38340221 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 58 |
| Conread position: | 182-362 |
| Cow position: | chr19:13129810-13129638 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 185-365 |
| Cow position: | chr19:25053738-25053921 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 185-381 |
| Cow position: | chr19:35622293-35622102 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 186-364 |
| Cow position: | chr19:20700022-20699843 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 189-363 |
| Cow position: | chr19:48722960-48722780 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 191-364 |
| Cow position: | chr19:387071-386898 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 206-363 |
| Cow position: | chr19:3124136-3124292 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 212-365 |
| Cow position: | chr19:5648744-5648898 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 213-367 |
| Cow position: | chr19:33622215-33622058 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 219-363 |
| Cow position: | chr19:50657562-50657409 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 232-365 |
| Cow position: | chr19:52305016-52305149 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 53, 37 |
| Conread position: | 238-364 |
| Cow position: | chr19:26690021-26689895 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 23 |
Show alignments to all cow chromosomes.