Cow genome map
| Conread name: | Thy1-THY010122C11 |
| Conread position: | 146-298 |
| Cow position: | chr20:37609259-37609105 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 146-365 |
| Cow position: | chr20:7182649-7182869 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 146-367 |
| Cow position: | chr20:33178490-33178720 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 147-329 |
| Cow position: | chr20:32988811-32988989 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 148-298 |
| Cow position: | chr20:11355244-11355096 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 148-322 |
| Cow position: | chr20:24234183-24234010 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 115, 38 |
| Conread position: | 148-347 |
| Cow position: | chr20:13821554-13821761 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 38, 125 |
| Conread position: | 148-363 |
| Cow position: | chr20:10033895-10034119 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 123 |
| Conread position: | 148-363 |
| Cow position: | chr20:12041122-12041338 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 138, 35 |
| Conread position: | 148-363 |
| Cow position: | chr20:20359757-20359967 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 148-365 |
| Cow position: | chr20:14679647-14679425 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 148-365 |
| Cow position: | chr20:14831588-14831806 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 148-365 |
| Cow position: | chr20:17670208-17669989 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 148-365 |
| Cow position: | chr20:20471809-20471598 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 38, 76 |
| Conread position: | 148-365 |
| Cow position: | chr20:23834154-23833933 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 138, 40 |
| Conread position: | 148-365 |
| Cow position: | chr20:32861971-32862185 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 148-383 |
| Cow position: | chr20:27001418-27001182 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 149-361 |
| Cow position: | chr20:42138401-42138181 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 123 |
| Conread position: | 150-268 |
| Cow position: | chr20:15918007-15917888 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 150-291 |
| Cow position: | chr20:23235060-23234918 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 150-348 |
| Cow position: | chr20:31069661-31069459 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 122 |
| Conread position: | 150-355 |
| Cow position: | chr20:25274264-25274462 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 150-358 |
| Cow position: | chr20:18413880-18413668 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 150-365 |
| Cow position: | chr20:26880883-26881107 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 35, 123 |
| Conread position: | 151-362 |
| Cow position: | chr20:18618658-18618448 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 151-364 |
| Cow position: | chr20:7659196-7659406 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 151-364 |
| Cow position: | chr20:26077105-26076892 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 34, 83 |
| Conread position: | 151-365 |
| Cow position: | chr20:35958669-35958452 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 153-365 |
| Cow position: | chr20:15576865-15577084 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 118 |
| Conread position: | 153-365 |
| Cow position: | chr20:21019587-21019372 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 154-364 |
| Cow position: | chr20:9988602-9988391 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 132, 12 |
| Conread position: | 157-284 |
| Cow position: | chr20:39056023-39056151 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 114 |
| Conread position: | 157-310 |
| Cow position: | chr20:19339854-19340005 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 28, 113 |
| Conread position: | 157-333 |
| Cow position: | chr20:25823301-25823117 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 157-365 |
| Cow position: | chr20:35897537-35897325 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 28, 72 |
| Conread position: | 158-361 |
| Cow position: | chr20:19351736-19351957 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 158-362 |
| Cow position: | chr20:220637-220426 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 158-363 |
| Cow position: | chr20:13994831-13994618 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 160-364 |
| Cow position: | chr20:19266170-19265965 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 162-364 |
| Cow position: | chr20:7110108-7110309 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 24, 6 |
| Conread position: | 162-365 |
| Cow position: | chr20:4894880-4895086 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 35 |
| Conread position: | 162-365 |
| Cow position: | chr20:7442116-7442317 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 24, 7 |
| Conread position: | 162-365 |
| Cow position: | chr20:32577908-32578112 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 24, 68 |
| Conread position: | 163-361 |
| Cow position: | chr20:38123902-38123695 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 22, 84 |
| Conread position: | 163-363 |
| Cow position: | chr20:41500526-41500735 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 23, 109 |
| Conread position: | 167-362 |
| Cow position: | chr20:7600773-7600968 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 167-365 |
| Cow position: | chr20:20557642-20557847 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 175-363 |
| Cow position: | chr20:5104440-5104626 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 175-363 |
| Cow position: | chr20:13465510-13465327 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 175-364 |
| Cow position: | chr20:35907051-35907239 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 175-366 |
| Cow position: | chr20:7539224-7539421 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 181-362 |
| Cow position: | chr20:14865186-14865368 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 105, 5 |
| Conread position: | 185-342 |
| Cow position: | chr20:12362877-12363033 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 190-367 |
| Cow position: | chr20:29308521-29308700 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 194-365 |
| Cow position: | chr20:18491165-18490994 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 87, 74 |
| Conread position: | 203-365 |
| Cow position: | chr20:3892012-3891851 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 212-365 |
| Cow position: | chr20:37093548-37093701 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 215-363 |
| Cow position: | chr20:32667953-32667798 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 54 |
| Conread position: | 232-367 |
| Cow position: | chr20:3427096-3426963 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 235-358 |
| Cow position: | chr20:37165665-37165540 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 235-363 |
| Cow position: | chr20:4892962-4893088 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 235-366 |
| Cow position: | chr20:27843594-27843457 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 33 |
Show alignments to all cow chromosomes.