Cow genome map
| Conread name: | Thy1-THY010122C11 |
| Conread position: | 138-358 |
| Cow position: | chr22:10685102-10685320 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 148, 9 |
| Conread position: | 138-362 |
| Cow position: | chr22:40048542-40048327 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 141-361 |
| Cow position: | chr22:41971170-41971392 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 6 |
| Conread position: | 145-340 |
| Cow position: | chr22:26011856-26011654 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 88, 5 |
| Conread position: | 147-310 |
| Cow position: | chr22:26376250-26376084 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 147-361 |
| Cow position: | chr22:14118960-14118739 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 147-364 |
| Cow position: | chr22:35382265-35382490 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 38, 171 |
| Conread position: | 147-365 |
| Cow position: | chr22:1975593-1975373 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 148-279 |
| Cow position: | chr22:13057715-13057848 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 148-284 |
| Cow position: | chr22:15358224-15358088 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 103, 122 |
| Conread position: | 148-313 |
| Cow position: | chr22:33386526-33386690 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 148-334 |
| Cow position: | chr22:1081484-1081295 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 138, 75 |
| Conread position: | 148-351 |
| Cow position: | chr22:19040385-19040594 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 148-358 |
| Cow position: | chr22:23861167-23861379 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 14, 99 |
| Conread position: | 148-363 |
| Cow position: | chr22:2476228-2476447 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 124 |
| Conread position: | 148-365 |
| Cow position: | chr22:11745925-11746145 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 148-368 |
| Cow position: | chr22:37554641-37554868 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 148-381 |
| Cow position: | chr22:26184182-26184416 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 148-399 |
| Cow position: | chr22:19738591-19738854 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 149-325 |
| Cow position: | chr22:16650222-16650402 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 137, 27 |
| Conread position: | 150-341 |
| Cow position: | chr22:3064235-3064429 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 150-341 |
| Cow position: | chr22:13187858-13187665 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 63 |
| Conread position: | 150-349 |
| Cow position: | chr22:33917919-33918122 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 166 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 150-359 |
| Cow position: | chr22:5622738-5622951 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 150-359 |
| Cow position: | chr22:9466590-9466391 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 122 |
| Conread position: | 150-361 |
| Cow position: | chr22:23618321-23618541 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 120 |
| Conread position: | 150-365 |
| Cow position: | chr22:23009960-23010172 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 150-365 |
| Cow position: | chr22:44924081-44924301 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 150-366 |
| Cow position: | chr22:13235517-13235308 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 151-364 |
| Cow position: | chr22:19848417-19848634 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 35, 85 |
| Conread position: | 151-365 |
| Cow position: | chr22:6566668-6566882 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 151-367 |
| Cow position: | chr22:22997456-22997238 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 152-336 |
| Cow position: | chr22:23580865-23581046 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 152-354 |
| Cow position: | chr22:15666189-15665986 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 10, 120 |
| Conread position: | 152-364 |
| Cow position: | chr22:11778632-11778853 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 11, 118 |
| Conread position: | 152-365 |
| Cow position: | chr22:28370920-28370707 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 152-365 |
| Cow position: | chr22:35520279-35520502 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 33, 119 |
| Conread position: | 152-367 |
| Cow position: | chr22:41245222-41245007 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 153-364 |
| Cow position: | chr22:2913254-2913040 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 153-365 |
| Cow position: | chr22:4651157-4650942 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 153-365 |
| Cow position: | chr22:25742976-25743192 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 153-365 |
| Cow position: | chr22:39293772-39293986 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 154-361 |
| Cow position: | chr22:26316446-26316238 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 118 |
| Conread position: | 154-365 |
| Cow position: | chr22:23854950-23854742 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 154-365 |
| Cow position: | chr22:25943451-25943242 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 155-363 |
| Cow position: | chr22:32221618-32221423 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 30, 116 |
| Conread position: | 155-365 |
| Cow position: | chr22:15398602-15398817 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 156-363 |
| Cow position: | chr22:44835620-44835405 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 156-368 |
| Cow position: | chr22:25629789-25630013 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 81 |
| Conread position: | 157-362 |
| Cow position: | chr22:25783952-25784162 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 157-363 |
| Cow position: | chr22:24185439-24185643 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 158-363 |
| Cow position: | chr22:15428477-15428680 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 128, 20 |
| Conread position: | 160-344 |
| Cow position: | chr22:19207944-19207751 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 160-365 |
| Cow position: | chr22:42605599-42605393 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 112 |
| Conread position: | 167-364 |
| Cow position: | chr22:4161649-4161851 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 167-365 |
| Cow position: | chr22:37201816-37201618 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 19, 70 |
| Conread position: | 170-361 |
| Cow position: | chr22:30515211-30515017 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 170-364 |
| Cow position: | chr22:33201453-33201248 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 170-366 |
| Cow position: | chr22:39303043-39303246 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 171-365 |
| Cow position: | chr22:9155407-9155607 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 171-365 |
| Cow position: | chr22:10683704-10683904 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 115, 98 |
| Conread position: | 171-366 |
| Cow position: | chr22:7301875-7302083 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 104 |
| Conread position: | 174-364 |
| Cow position: | chr22:8063369-8063564 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 175-361 |
| Cow position: | chr22:11500735-11500543 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 177-364 |
| Cow position: | chr22:31149377-31149190 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 178-364 |
| Cow position: | chr22:27514620-27514425 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 180-365 |
| Cow position: | chr22:26080947-26081139 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 101, 5 |
| Conread position: | 182-365 |
| Cow position: | chr22:15090686-15090501 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 182-365 |
| Cow position: | chr22:33485656-33485842 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 185-356 |
| Cow position: | chr22:15623267-15623088 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 60, 85 |
| Conread position: | 185-367 |
| Cow position: | chr22:27791408-27791225 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 30 |
| Conread position: | 190-381 |
| Cow position: | chr22:13274408-13274217 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 96, 79 |
| Conread position: | 199-365 |
| Cow position: | chr22:25311613-25311785 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 87, 70 |
| Conread position: | 207-367 |
| Cow position: | chr22:14006071-14005911 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 212-356 |
| Cow position: | chr22:10064981-10065126 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 234-366 |
| Cow position: | chr22:33797891-33798025 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 235-364 |
| Cow position: | chr22:11590513-11590378 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 46, 34 |
Show alignments to all cow chromosomes.