Cow genome map
| Conread name: | Thy1-THY010122C11 |
| Conread position: | 139-365 |
| Cow position: | chr24:37204909-37205139 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 132 |
| Conread position: | 144-365 |
| Cow position: | chr24:15919672-15919443 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 145-364 |
| Cow position: | chr24:36486097-36486319 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 146-365 |
| Cow position: | chr24:41332915-41333135 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 147-364 |
| Cow position: | chr24:24311466-24311241 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 147-366 |
| Cow position: | chr24:28349535-28349324 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 19 |
| Conread position: | 148-268 |
| Cow position: | chr24:26455800-26455678 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 148-285 |
| Cow position: | chr24:40855152-40855015 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 148-310 |
| Cow position: | chr24:18786959-18787124 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 148-353 |
| Cow position: | chr24:27054368-27054152 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 148-354 |
| Cow position: | chr24:6061439-6061648 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 148-363 |
| Cow position: | chr24:39350258-39350465 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 148-364 |
| Cow position: | chr24:6507809-6508023 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 40, 62 |
| Conread position: | 148-364 |
| Cow position: | chr24:27633367-27633154 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 148-364 |
| Cow position: | chr24:32158315-32158529 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 37, 87 |
| Conread position: | 148-364 |
| Cow position: | chr24:39259118-39258905 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 38 |
| Conread position: | 148-365 |
| Cow position: | chr24:7079750-7079529 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 148-365 |
| Cow position: | chr24:17412701-17412475 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 169 |
| Conread position: | 148-365 |
| Cow position: | chr24:23685110-23685321 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 148-365 |
| Cow position: | chr24:36801338-36801143 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 148-365 |
| Cow position: | chr24:43733931-43733709 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 150-300 |
| Cow position: | chr24:31258379-31258530 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 150-365 |
| Cow position: | chr24:27968034-27967820 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 150-365 |
| Cow position: | chr24:38267147-38266933 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 151-363 |
| Cow position: | chr24:14746591-14746377 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 151-364 |
| Cow position: | chr24:15508584-15508794 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 19 |
| Conread position: | 151-365 |
| Cow position: | chr24:32758802-32759030 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 151-365 |
| Cow position: | chr24:39493251-39493037 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 151-365 |
| Cow position: | chr24:44041051-44041269 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 15, 122 |
| Conread position: | 152-345 |
| Cow position: | chr24:14617610-14617416 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 152-363 |
| Cow position: | chr24:27683489-27683700 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 134, 34 |
| Conread position: | 152-363 |
| Cow position: | chr24:35569140-35568929 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 153-364 |
| Cow position: | chr24:21860270-21860480 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 154-360 |
| Cow position: | chr24:20862004-20862212 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 154-365 |
| Cow position: | chr24:15473313-15473095 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 155-364 |
| Cow position: | chr24:18243514-18243724 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 155-382 |
| Cow position: | chr24:30860590-30860359 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 116 |
| Conread position: | 156-365 |
| Cow position: | chr24:42580891-42581090 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 130, 27 |
| Conread position: | 156-367 |
| Cow position: | chr24:36554885-36555091 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 157-363 |
| Cow position: | chr24:35074044-35073834 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 157-364 |
| Cow position: | chr24:24136908-24137110 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 157-364 |
| Cow position: | chr24:40091620-40091831 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 12, 98 |
| Conread position: | 157-364 |
| Cow position: | chr24:43432742-43432542 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 157-365 |
| Cow position: | chr24:39123815-39123609 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 157-365 |
| Cow position: | chr24:39955095-39955306 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 10, 30 |
| Conread position: | 157-367 |
| Cow position: | chr24:6342134-6341908 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 122 |
| Conread position: | 158-288 |
| Cow position: | chr24:19611960-19611830 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 113 |
| Conread position: | 159-365 |
| Cow position: | chr24:28062900-28062685 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 160-361 |
| Cow position: | chr24:28279584-28279385 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 126, 23 |
| Conread position: | 160-365 |
| Cow position: | chr24:25677986-25677774 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 25, 166 |
| Conread position: | 169-362 |
| Cow position: | chr24:43448664-43448852 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 170-365 |
| Cow position: | chr24:18741632-18741831 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 16, 96 |
| Conread position: | 170-365 |
| Cow position: | chr24:30900291-30900488 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 171-364 |
| Cow position: | chr24:14337665-14337475 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 172-381 |
| Cow position: | chr24:40346573-40346786 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 177-365 |
| Cow position: | chr24:11007151-11006955 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 178-365 |
| Cow position: | chr24:39500348-39500543 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 7, 93 |
| Conread position: | 180-362 |
| Cow position: | chr24:29027970-29027789 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 62 |
| Conread position: | 186-364 |
| Cow position: | chr24:34533048-34532864 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 186-393 |
| Cow position: | chr24:6665558-6665771 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 95, 85 |
| Conread position: | 189-365 |
| Cow position: | chr24:22305467-22305298 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 79 |
| Conread position: | 199-364 |
| Cow position: | chr24:28724347-28724185 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 70 |
| Conread position: | 213-360 |
| Cow position: | chr24:30428035-30427886 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 222-366 |
| Cow position: | chr24:36730385-36730240 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 223-365 |
| Cow position: | chr24:1271979-1272129 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 31, 48 |
| Conread position: | 235-367 |
| Cow position: | chr24:6957050-6956915 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 235-367 |
| Cow position: | chr24:42816867-42816734 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 239-365 |
| Cow position: | chr24:40445996-40445872 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.