Cow genome map
| Conread name: | Thy1-THY010122C11 |
| Conread position: | 148-278 |
| Cow position: | chr28:4763865-4763734 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 148-279 |
| Cow position: | chr28:26901081-26901212 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 122 |
| Conread position: | 148-310 |
| Cow position: | chr28:21570177-21570014 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 148-320 |
| Cow position: | chr28:33285124-33285294 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 148-364 |
| Cow position: | chr28:2814518-2814728 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 148-364 |
| Cow position: | chr28:3769678-3769885 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 148-364 |
| Cow position: | chr28:11007185-11006947 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 37, 137 |
| Conread position: | 148-364 |
| Cow position: | chr28:15689030-15688811 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 148-364 |
| Cow position: | chr28:32300370-32300589 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 148-365 |
| Cow position: | chr28:4022374-4022152 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 148-365 |
| Cow position: | chr28:11500898-11501122 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 148-365 |
| Cow position: | chr28:16687014-16686802 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 148-365 |
| Cow position: | chr28:25564071-25563846 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 148-366 |
| Cow position: | chr28:4274853-4275062 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 74, 121 |
| Conread position: | 148-366 |
| Cow position: | chr28:13693741-13693519 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 149-364 |
| Cow position: | chr28:23621532-23621318 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 150-343 |
| Cow position: | chr28:10035379-10035192 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 120, 20 |
| Conread position: | 150-364 |
| Cow position: | chr28:21873761-21873543 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 150-366 |
| Cow position: | chr28:18934438-18934224 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 136, 73 |
| Conread position: | 150-368 |
| Cow position: | chr28:23007747-23007960 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 151-362 |
| Cow position: | chr28:12942365-12942155 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 151-364 |
| Cow position: | chr28:17029734-17029945 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 74, 10 |
| Conread position: | 151-365 |
| Cow position: | chr28:9285387-9285608 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 151-365 |
| Cow position: | chr28:26220241-26220031 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 152-355 |
| Cow position: | chr28:15081938-15082143 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 33, 119 |
| Conread position: | 152-369 |
| Cow position: | chr28:7607215-7606993 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 153-349 |
| Cow position: | chr28:21940181-21939981 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 153-365 |
| Cow position: | chr28:18462627-18462843 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 153-365 |
| Cow position: | chr28:34150539-34150761 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 121 |
| Conread position: | 154-362 |
| Cow position: | chr28:28414657-28414440 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 155-365 |
| Cow position: | chr28:16622983-16622786 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 155-367 |
| Cow position: | chr28:10642035-10642250 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 156-365 |
| Cow position: | chr28:34230212-34229999 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 157-364 |
| Cow position: | chr28:28590716-28590509 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 157-365 |
| Cow position: | chr28:29455676-29455887 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 158-362 |
| Cow position: | chr28:17625152-17625364 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 113 |
| Conread position: | 158-369 |
| Cow position: | chr28:15008141-15007930 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 160-365 |
| Cow position: | chr28:29392988-29392772 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 25, 6 |
| Conread position: | 162-361 |
| Cow position: | chr28:30995254-30995051 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 162-365 |
| Cow position: | chr28:10456557-10456752 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 163-362 |
| Cow position: | chr28:9851592-9851403 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 166-368 |
| Cow position: | chr28:14508399-14508600 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 175-364 |
| Cow position: | chr28:16204366-16204563 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 175-365 |
| Cow position: | chr28:12430568-12430379 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 175-365 |
| Cow position: | chr28:19133755-19133553 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 175-367 |
| Cow position: | chr28:26719313-26719127 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 61 |
| Conread position: | 178-362 |
| Cow position: | chr28:5817800-5817620 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 179-365 |
| Cow position: | chr28:2340492-2340301 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 107, 75 |
| Conread position: | 182-363 |
| Cow position: | chr28:9294968-9294785 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 99, 42 |
| Conread position: | 184-365 |
| Cow position: | chr28:34636620-34636448 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 186-365 |
| Cow position: | chr28:14657652-14657470 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 189-365 |
| Cow position: | chr28:23231118-23231297 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 199-365 |
| Cow position: | chr28:11355986-11356154 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 87, 22 |
| Conread position: | 210-354 |
| Cow position: | chr28:6993807-6993656 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 210-365 |
| Cow position: | chr28:25334950-25334790 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 76, 11 |
| Conread position: | 214-365 |
| Cow position: | chr28:16879350-16879498 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 219-364 |
| Cow position: | chr28:10514174-10514321 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 235-361 |
| Cow position: | chr28:17316765-17316632 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 246-365 |
| Cow position: | chr28:1099754-1099872 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.