Cow genome map
| Conread name: | Thy1-THY010122C11 |
| Conread position: | 148-363 |
| Cow position: | chr29:356300-356091 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 148-364 |
| Cow position: | chr29:650261-650038 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 148-364 |
| Cow position: | chr29:37960995-37961214 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 122 |
| Conread position: | 148-365 |
| Cow position: | chr29:13554120-13553895 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 125 |
| Conread position: | 148-365 |
| Cow position: | chr29:15940651-15940875 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 148-365 |
| Cow position: | chr29:32655450-32655662 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 148-365 |
| Cow position: | chr29:39023368-39023575 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 148-368 |
| Cow position: | chr29:6150110-6150312 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 148-399 |
| Cow position: | chr29:12901125-12901386 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 150-336 |
| Cow position: | chr29:709139-709331 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 35, 121 |
| Conread position: | 150-339 |
| Cow position: | chr29:10188035-10187848 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 150-362 |
| Cow position: | chr29:603340-603545 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 150-362 |
| Cow position: | chr29:18963711-18963506 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 150-364 |
| Cow position: | chr29:4367703-4367484 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 151-362 |
| Cow position: | chr29:9912152-9911943 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 35, 77 |
| Conread position: | 151-363 |
| Cow position: | chr29:18072913-18072694 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 151-364 |
| Cow position: | chr29:19907335-19907120 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 151-365 |
| Cow position: | chr29:11787776-11787555 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 151-365 |
| Cow position: | chr29:18338563-18338783 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 151-367 |
| Cow position: | chr29:25737438-25737655 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 152-363 |
| Cow position: | chr29:23743076-23743274 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 153-315 |
| Cow position: | chr29:35442488-35442648 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 133, 17 |
| Conread position: | 153-361 |
| Cow position: | chr29:5964442-5964646 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 153-363 |
| Cow position: | chr29:37719886-37719675 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 153-364 |
| Cow position: | chr29:12451355-12451135 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 27, 103 |
| Conread position: | 153-365 |
| Cow position: | chr29:18695227-18695020 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 133, 33 |
| Conread position: | 153-365 |
| Cow position: | chr29:26735005-26734796 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 133, 82 |
| Conread position: | 153-366 |
| Cow position: | chr29:19508931-19508722 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 154-365 |
| Cow position: | chr29:31926312-31926527 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 177 |
| Conread position: | 156-306 |
| Cow position: | chr29:7393075-7392916 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 156-365 |
| Cow position: | chr29:29302685-29302891 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 127, 30 |
| Conread position: | 157-365 |
| Cow position: | chr29:1956120-1956326 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 122, 27 |
| Conread position: | 159-365 |
| Cow position: | chr29:2522541-2522341 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 160-368 |
| Cow position: | chr29:21534705-21534919 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 161-364 |
| Cow position: | chr29:26129470-26129262 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 162-365 |
| Cow position: | chr29:7407919-7408126 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 163-364 |
| Cow position: | chr29:24952656-24952449 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 163-364 |
| Cow position: | chr29:34736500-34736702 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 24, 78 |
| Conread position: | 163-365 |
| Cow position: | chr29:12783988-12784192 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 166-361 |
| Cow position: | chr29:44135495-44135698 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 166-365 |
| Cow position: | chr29:11071733-11071941 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 167-362 |
| Cow position: | chr29:2588929-2589125 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 167-364 |
| Cow position: | chr29:478068-477866 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 119, 21 |
| Conread position: | 169-364 |
| Cow position: | chr29:21925172-21924973 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 169-365 |
| Cow position: | chr29:34609759-34609961 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 170-310 |
| Cow position: | chr29:38992856-38992995 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 172-358 |
| Cow position: | chr29:36404781-36404591 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 175-344 |
| Cow position: | chr29:10475367-10475195 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 10, 47 |
| Conread position: | 175-365 |
| Cow position: | chr29:16309697-16309513 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 177-365 |
| Cow position: | chr29:26017550-26017748 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 46, 99 |
| Conread position: | 187-344 |
| Cow position: | chr29:1612633-1612795 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 48 |
| Conread position: | 189-365 |
| Cow position: | chr29:32644862-32644676 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 190-366 |
| Cow position: | chr29:22162314-22162489 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 199-366 |
| Cow position: | chr29:17339368-17339535 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 212-364 |
| Cow position: | chr29:21265649-21265498 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 74, 22 |
| Conread position: | 233-364 |
| Cow position: | chr29:7051855-7051716 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 235-369 |
| Cow position: | chr29:34699924-34700055 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 243-364 |
| Cow position: | chr29:5063015-5062895 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 244-400 |
| Cow position: | chr29:7972153-7972311 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 25 |
Show alignments to all cow chromosomes.