Cow genome map
| Conread name: | Tra1-TCH01A040030 |
| Conread position: | 253-704 |
| Cow position: | chr1:2170012-2169564 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 253-710 |
| Cow position: | chr1:20385112-20384660 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 253-785 |
| Cow position: | chr1:74821963-74822499 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 254-457 |
| Cow position: | chr1:95050633-95050426 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 254-710 |
| Cow position: | chr1:98551235-98551677 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 264-784 |
| Cow position: | chr1:22826690-22827208 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 267-461 |
| Cow position: | chr1:38712500-38712698 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 267-710 |
| Cow position: | chr1:1981585-1981154 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 267-711 |
| Cow position: | chr1:22728574-22729013 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 162 |
| Conread position: | 268-383 |
| Cow position: | chr1:55135290-55135405 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 268-461 |
| Cow position: | chr1:3908873-3908680 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 268-709 |
| Cow position: | chr1:41696588-41697018 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 268-710 |
| Cow position: | chr1:51968005-51968421 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 268-710 |
| Cow position: | chr1:68818285-68817838 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 261 |
| Conread position: | 268-711 |
| Cow position: | chr1:54207295-54206857 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 268-719 |
| Cow position: | chr1:30034078-30034505 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 268-728 |
| Cow position: | chr1:57272364-57272822 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 268-787 |
| Cow position: | chr1:53397511-53398029 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 268-787 |
| Cow position: | chr1:67821690-67821170 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 268-787 |
| Cow position: | chr1:84812423-84811885 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 268-787 |
| Cow position: | chr1:85028490-85029007 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 19 |
| Conread position: | 269-457 |
| Cow position: | chr1:100759612-100759800 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 269-659 |
| Cow position: | chr1:98493958-98494335 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 269-710 |
| Cow position: | chr1:41004837-41004402 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 269-787 |
| Cow position: | chr1:42887717-42887223 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 269-787 |
| Cow position: | chr1:64678237-64678749 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 272-700 |
| Cow position: | chr1:12596378-12595953 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 272-703 |
| Cow position: | chr1:26702666-26702253 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 272-710 |
| Cow position: | chr1:55203111-55202663 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 300 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 34, 334 |
| Conread position: | 272-710 |
| Cow position: | chr1:70380623-70380183 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 272-717 |
| Cow position: | chr1:1403918-1403513 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 311 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 272-787 |
| Cow position: | chr1:13638132-13637609 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 272-787 |
| Cow position: | chr1:82937053-82936543 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 273-461 |
| Cow position: | chr1:24581173-24581361 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 273-719 |
| Cow position: | chr1:43353117-43352687 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 273-783 |
| Cow position: | chr1:42874409-42873900 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 14 |
| Conread position: | 273-787 |
| Cow position: | chr1:89349514-89350019 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 274-709 |
| Cow position: | chr1:665905-666325 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 274-718 |
| Cow position: | chr1:81859681-81859258 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 13 |
| Conread position: | 275-787 |
| Cow position: | chr1:61006024-61005508 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 12 |
| Conread position: | 276-681 |
| Cow position: | chr1:92198312-92198701 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 280-729 |
| Cow position: | chr1:99136890-99136451 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 280-737 |
| Cow position: | chr1:96478223-96478685 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 283-737 |
| Cow position: | chr1:78091574-78092023 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 6 |
| Conread position: | 286-710 |
| Cow position: | chr1:84255302-84255724 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 287-706 |
| Cow position: | chr1:89342443-89342038 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 124 |
| Conread position: | 287-710 |
| Cow position: | chr1:63391227-63390810 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 177 |
| Conread position: | 290-703 |
| Cow position: | chr1:36874566-36874967 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 174 |
| Conread position: | 293-710 |
| Cow position: | chr1:56225025-56225427 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 22 |
| Conread position: | 295-709 |
| Cow position: | chr1:78783105-78783506 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 14 |
| Conread position: | 298-706 |
| Cow position: | chr1:95499940-95499537 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 169 |
| Conread position: | 298-710 |
| Cow position: | chr1:52039194-52039593 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 165 |
| Conread position: | 298-783 |
| Cow position: | chr1:97761186-97761650 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 154 |
| Conread position: | 322-703 |
| Cow position: | chr1:13548411-13548030 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 52 |
| Conread position: | 342-787 |
| Cow position: | chr1:24133462-24133009 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 112 |
| Conread position: | 348-775 |
| Cow position: | chr1:3035383-3034957 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 63 |
| Conread position: | 349-737 |
| Cow position: | chr1:91817163-91816785 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 114 |
| Conread position: | 357-710 |
| Cow position: | chr1:48105820-48105473 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 99 |
| Conread position: | 359-704 |
| Cow position: | chr1:3657748-3657408 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 180, 106 |
| Conread position: | 364-789 |
| Cow position: | chr1:82884762-82884337 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 99 |
| Conread position: | 377-787 |
| Cow position: | chr1:1877665-1878074 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 17 |
| Conread position: | 380-710 |
| Cow position: | chr1:21508032-21508352 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 159, 8 |
| Conread position: | 412-783 |
| Cow position: | chr1:73960371-73960753 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 48 |
| Conread position: | 414-708 |
| Cow position: | chr1:7350211-7350502 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 48 |
| Conread position: | 414-710 |
| Cow position: | chr1:57901064-57900779 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 49 |
| Conread position: | 423-719 |
| Cow position: | chr1:34000578-34000882 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 426-787 |
| Cow position: | chr1:39427316-39426951 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 37, 107 |
| Conread position: | 468-786 |
| Cow position: | chr1:70538324-70538664 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 482-737 |
| Cow position: | chr1:68217625-68217375 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 41, 121 |
| Conread position: | 491-719 |
| Cow position: | chr1:634935-635163 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 48, 111 |
| Conread position: | 492-704 |
| Cow position: | chr1:81563478-81563691 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 496-706 |
| Cow position: | chr1:29671775-29671565 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 499-675 |
| Cow position: | chr1:99222078-99221902 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 499-697 |
| Cow position: | chr1:82370503-82370688 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 499-701 |
| Cow position: | chr1:3924042-3923843 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 499-709 |
| Cow position: | chr1:14379778-14379575 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 499-709 |
| Cow position: | chr1:45020051-45019848 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 499-709 |
| Cow position: | chr1:74947365-74947163 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 175, 39 |
| Conread position: | 499-710 |
| Cow position: | chr1:43505275-43505485 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 499-710 |
| Cow position: | chr1:90864548-90864332 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 499-710 |
| Cow position: | chr1:95765337-95765129 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 158 |
| Conread position: | 499-718 |
| Cow position: | chr1:29935629-29935418 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 499-729 |
| Cow position: | chr1:60707155-60707384 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 499-737 |
| Cow position: | chr1:60907113-60907363 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 499-783 |
| Cow position: | chr1:1956577-1956283 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 35, 98 |
| Conread position: | 499-787 |
| Cow position: | chr1:5023988-5023708 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 138 |
| Conread position: | 499-787 |
| Cow position: | chr1:5135939-5135656 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 499-787 |
| Cow position: | chr1:47233723-47233424 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 499-787 |
| Cow position: | chr1:78857570-78857275 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 499-787 |
| Cow position: | chr1:80899860-80900174 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 499-787 |
| Cow position: | chr1:92197212-92197507 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 40, 76 |
| Conread position: | 499-788 |
| Cow position: | chr1:61884667-61884968 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 500-729 |
| Cow position: | chr1:75744613-75744841 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 102 |
| Conread position: | 500-788 |
| Cow position: | chr1:39510289-39510003 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 501-776 |
| Cow position: | chr1:71253801-71253510 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 38, 97 |
| Conread position: | 501-787 |
| Cow position: | chr1:1165354-1165653 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 24, 224 |
| Conread position: | 502-710 |
| Cow position: | chr1:37322250-37322041 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 502-718 |
| Cow position: | chr1:51628747-51628529 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 37, 144 |
| Conread position: | 508-698 |
| Cow position: | chr1:62732336-62732525 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 508-700 |
| Cow position: | chr1:19516645-19516454 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 508-709 |
| Cow position: | chr1:70236532-70236328 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 508-710 |
| Cow position: | chr1:25383423-25383624 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 508-710 |
| Cow position: | chr1:94403977-94404173 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 508-719 |
| Cow position: | chr1:56643828-56643619 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 508-785 |
| Cow position: | chr1:71079192-71078908 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 166, 21 |
| Conread position: | 508-787 |
| Cow position: | chr1:85162786-85162493 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 515-719 |
| Cow position: | chr1:6077662-6077869 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 515-781 |
| Cow position: | chr1:54732690-54732437 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 516-703 |
| Cow position: | chr1:59518670-59518872 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 23, 173 |
| Conread position: | 518-738 |
| Cow position: | chr1:43358244-43358023 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 78 |
| Conread position: | 519-709 |
| Cow position: | chr1:56634870-56635055 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 519-710 |
| Cow position: | chr1:62919948-62920125 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 519-781 |
| Cow position: | chr1:77720460-77720200 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 20, 77 |
| Conread position: | 519-787 |
| Cow position: | chr1:19482301-19482027 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 20, 70 |
| Conread position: | 519-787 |
| Cow position: | chr1:89381050-89381329 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 521-709 |
| Cow position: | chr1:69415943-69415753 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 8 |
| Conread position: | 524-706 |
| Cow position: | chr1:71952864-71953033 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 526-736 |
| Cow position: | chr1:98030693-98030901 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 526-787 |
| Cow position: | chr1:11728956-11729229 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 530-787 |
| Cow position: | chr1:8287831-8287576 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 69 |
| Conread position: | 534-728 |
| Cow position: | chr1:100393377-100393187 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 170, 133 |
| Conread position: | 536-787 |
| Cow position: | chr1:62036590-62036856 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 131 |
| Conread position: | 537-729 |
| Cow position: | chr1:26179024-26178833 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 537-776 |
| Cow position: | chr1:62291895-62291655 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 137, 50 |
| Conread position: | 539-787 |
| Cow position: | chr1:12464871-12464610 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 134, 58 |
| Conread position: | 541-710 |
| Cow position: | chr1:4414413-4414247 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 133, 46 |
| Conread position: | 545-787 |
| Cow position: | chr1:5597400-5597158 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 131, 21 |
| Conread position: | 547-709 |
| Cow position: | chr1:24542781-24542622 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 127, 46 |
| Conread position: | 551-786 |
| Cow position: | chr1:89497770-89498009 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 104, 37 |
| Conread position: | 553-722 |
| Cow position: | chr1:83072250-83072412 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 159, 34 |
| Conread position: | 554-710 |
| Cow position: | chr1:102113301-102113144 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 555-710 |
| Cow position: | chr1:24413248-24413406 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 555-710 |
| Cow position: | chr1:33331280-33331127 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 119, 97 |
| Conread position: | 560-709 |
| Cow position: | chr1:89082921-89083070 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 114, 42 |
| Conread position: | 560-737 |
| Cow position: | chr1:42398383-42398205 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 561-709 |
| Cow position: | chr1:84910816-84910674 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 48 |
| Conread position: | 567-787 |
| Cow position: | chr1:24581399-24581630 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 127 |
| Conread position: | 572-786 |
| Cow position: | chr1:91875085-91874859 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 105, 33 |
| Conread position: | 576-785 |
| Cow position: | chr1:12978506-12978734 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 577-776 |
| Cow position: | chr1:27380301-27380502 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 582-787 |
| Cow position: | chr1:88913149-88913374 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 584-780 |
| Cow position: | chr1:86110898-86110690 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 585-710 |
| Cow position: | chr1:31960059-31960186 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 588-787 |
| Cow position: | chr1:89508394-89508603 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 590-788 |
| Cow position: | chr1:77683197-77683407 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 595-785 |
| Cow position: | chr1:427076-426878 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 600-781 |
| Cow position: | chr1:68845302-68845121 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 603-787 |
| Cow position: | chr1:91023615-91023413 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 605-778 |
| Cow position: | chr1:50907539-50907373 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 69, 24 |
Show alignments to all cow chromosomes.