Cow genome map
| Conread name: | Tra1-TCH01A040030 |
| Conread position: | 254-680 |
| Cow position: | chr12:4593564-4593990 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 13 |
| Conread position: | 268-715 |
| Cow position: | chr12:27928992-27928548 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 268-719 |
| Cow position: | chr12:17007681-17008129 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 269-702 |
| Cow position: | chr12:17079746-17080166 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 17 |
| Conread position: | 282-719 |
| Cow position: | chr12:19691742-19691309 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 287-788 |
| Cow position: | chr12:18123191-18123680 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 27 |
| Conread position: | 298-785 |
| Cow position: | chr12:47928728-47929209 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 147 |
| Conread position: | 322-787 |
| Cow position: | chr12:6210629-6210148 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 52 |
| Conread position: | 360-687 |
| Cow position: | chr12:27803470-27803155 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 179, 100 |
| Conread position: | 364-710 |
| Cow position: | chr12:5632296-5631966 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 175, 97 |
| Conread position: | 384-722 |
| Cow position: | chr12:30596064-30596398 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 155, 79 |
| Conread position: | 385-787 |
| Cow position: | chr12:15121941-15122336 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 217, 78 |
| Conread position: | 394-709 |
| Cow position: | chr12:31959502-31959802 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 140, 44 |
| Conread position: | 424-787 |
| Cow position: | chr12:18577486-18577849 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 10 |
| Conread position: | 437-719 |
| Cow position: | chr12:9710554-9710284 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 102, 26 |
| Conread position: | 490-710 |
| Cow position: | chr12:44622057-44622270 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 49, 92 |
| Conread position: | 498-710 |
| Cow position: | chr12:26317165-26317378 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 499-709 |
| Cow position: | chr12:30805562-30805769 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 499-723 |
| Cow position: | chr12:40307403-40307629 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 499-729 |
| Cow position: | chr12:11056583-11056810 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 164 |
| Conread position: | 499-769 |
| Cow position: | chr12:44905344-44905624 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 499-785 |
| Cow position: | chr12:30605449-30605157 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 238 |
| Conread position: | 499-787 |
| Cow position: | chr12:34148644-34148351 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 499-787 |
| Cow position: | chr12:37994018-37993722 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 500-701 |
| Cow position: | chr12:10162247-10162046 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 38, 105 |
| Conread position: | 500-709 |
| Cow position: | chr12:1223633-1223428 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 7 |
| Conread position: | 501-710 |
| Cow position: | chr12:18518380-18518582 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 502-783 |
| Cow position: | chr12:731215-730930 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 172, 36 |
| Conread position: | 503-709 |
| Cow position: | chr12:16851298-16851094 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 505-710 |
| Cow position: | chr12:43942192-43942387 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 20, 102 |
| Conread position: | 507-709 |
| Cow position: | chr12:44439136-44438943 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 508-710 |
| Cow position: | chr12:26223269-26223073 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 102 |
| Conread position: | 508-737 |
| Cow position: | chr12:32714757-32714988 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 509-729 |
| Cow position: | chr12:46143538-46143759 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 510-710 |
| Cow position: | chr12:18417281-18417486 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 519-706 |
| Cow position: | chr12:35354511-35354698 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 130 |
| Conread position: | 519-786 |
| Cow position: | chr12:39465305-39465588 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 245 |
| Conread position: | 521-782 |
| Cow position: | chr12:8710560-8710826 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 523-709 |
| Cow position: | chr12:19372373-19372194 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 529-737 |
| Cow position: | chr12:3994686-3994900 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 547-719 |
| Cow position: | chr12:29770817-29770648 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 127, 41 |
| Conread position: | 547-787 |
| Cow position: | chr12:5658320-5658067 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 550-719 |
| Cow position: | chr12:28471398-28471563 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 126, 37 |
| Conread position: | 555-717 |
| Cow position: | chr12:4809069-4809232 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 119, 110 |
| Conread position: | 560-787 |
| Cow position: | chr12:24662884-24663124 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 114, 45 |
| Conread position: | 563-787 |
| Cow position: | chr12:27037677-27037440 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 143, 111 |
| Conread position: | 564-786 |
| Cow position: | chr12:30210252-30210492 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 110, 7 |
| Conread position: | 568-789 |
| Cow position: | chr12:33129041-33129266 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 144, 105 |
| Conread position: | 571-709 |
| Cow position: | chr12:36544869-36544735 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 576-709 |
| Cow position: | chr12:33851140-33851273 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.