Cow genome map

Conread name: Tra1-TCH01A040030

Conread position: 252-710
Cow position: chr13:17800552-17800105 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 14

Conread position: 267-666
Cow position: chr13:33500149-33499757 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 19

Conread position: 267-703
Cow position: chr13:37516674-37517099 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 20

Conread position: 267-705
Cow position: chr13:23444340-23444779 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 304
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 35, 19

Conread position: 267-710
Cow position: chr13:41807219-41806806 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 20

Conread position: 267-785
Cow position: chr13:12990310-12989789 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 20

Conread position: 268-460
Cow position: chr13:46182237-46182048 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 152
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 19, 0

Conread position: 268-573
Cow position: chr13:20088091-20088383 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 33, 20

Conread position: 268-662
Cow position: chr13:34038031-34037642 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 18

Conread position: 268-688
Cow position: chr13:47590676-47591091 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 19

Conread position: 268-710
Cow position: chr13:15167282-15166850 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 268-717
Cow position: chr13:12978019-12977590 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 19

Conread position: 268-718
Cow position: chr13:24059866-24060311 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 20

Conread position: 268-719
Cow position: chr13:34375720-34375289 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-781
Cow position: chr13:37520885-37521433 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 268-786
Cow position: chr13:17820798-17821332 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-787
Cow position: chr13:21235225-21235734 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 145

Conread position: 268-787
Cow position: chr13:22085294-22085809 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 21

Conread position: 268-787
Cow position: chr13:61976502-61977023 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 269-702
Cow position: chr13:57493720-57494149 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 18

Conread position: 269-703
Cow position: chr13:47313362-47312959 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 19

Conread position: 269-709
Cow position: chr13:53535833-53536274 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 17

Conread position: 269-710
Cow position: chr13:3701896-3701469 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 18

Conread position: 272-728
Cow position: chr13:20683665-20684110 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 15

Conread position: 272-729
Cow position: chr13:971435-971881 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 15

Conread position: 275-709
Cow position: chr13:25531331-25531756 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 12

Conread position: 278-709
Cow position: chr13:6945842-6945399 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 9

Conread position: 287-786
Cow position: chr13:46525017-46525491 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 26

Conread position: 288-719
Cow position: chr13:12682095-12682522 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 178

Conread position: 293-787
Cow position: chr13:47007297-47007782 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 69

Conread position: 299-787
Cow position: chr13:20879402-20879887 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 165

Conread position: 305-785
Cow position: chr13:35525784-35526262 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 160

Conread position: 320-698
Cow position: chr13:21155081-21155450 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 14

Conread position: 322-744
Cow position: chr13:45355687-45355273 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 43

Conread position: 322-773
Cow position: chr13:18215841-18215394 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 131

Conread position: 326-719
Cow position: chr13:1568705-1568315 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 134

Conread position: 327-719
Cow position: chr13:52284312-52283935 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 16

Conread position: 354-710
Cow position: chr13:17855751-17855404 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 104

Conread position: 356-787
Cow position: chr13:18835563-18835141 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 107

Conread position: 361-710
Cow position: chr13:1767141-1766801 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 242
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 178, 99

Conread position: 362-787
Cow position: chr13:13321147-13320734 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 30

Conread position: 367-787
Cow position: chr13:152308-151900 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 11

Conread position: 371-785
Cow position: chr13:21175961-21176383 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 91

Conread position: 372-728
Cow position: chr13:40652294-40651947 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 80

Conread position: 393-729
Cow position: chr13:45604072-45604403 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 70

Conread position: 393-786
Cow position: chr13:12448648-12449050 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 68

Conread position: 393-787
Cow position: chr13:32017183-32017575 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 70

Conread position: 396-786
Cow position: chr13:34508213-34507824 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 67

Conread position: 414-787
Cow position: chr13:27524943-27525324 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 25

Conread position: 418-710
Cow position: chr13:25261477-25261779 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 218

Conread position: 420-710
Cow position: chr13:55843797-55843510 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 119, 42

Conread position: 427-787
Cow position: chr13:14927543-14927197 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 36

Conread position: 464-709
Cow position: chr13:21210139-21209892 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 212

Conread position: 488-787
Cow position: chr13:17021469-17021789 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 492-719
Cow position: chr13:20466048-20466263 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 46, 34

Conread position: 494-787
Cow position: chr13:48037865-48037560 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 91

Conread position: 496-784
Cow position: chr13:39460033-39459755 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 14, 75

Conread position: 498-729
Cow position: chr13:24586288-24586054 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 172

Conread position: 499-698
Cow position: chr13:33631360-33631170 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 89

Conread position: 499-703
Cow position: chr13:22886752-22886957 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 40, 91

Conread position: 499-704
Cow position: chr13:20880686-20880889 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 26, 79

Conread position: 499-710
Cow position: chr13:15172167-15172380 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 499-710
Cow position: chr13:17114140-17114345 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 40, 57

Conread position: 499-723
Cow position: chr13:20784828-20784612 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 40, 99

Conread position: 499-739
Cow position: chr13:55295386-55295619 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 185
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 40, 20

Conread position: 499-782
Cow position: chr13:35659993-35659701 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 110

Conread position: 499-783
Cow position: chr13:30693941-30693655 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 98

Conread position: 499-785
Cow position: chr13:13501382-13501679 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 37

Conread position: 499-785
Cow position: chr13:55673965-55674269 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 499-786
Cow position: chr13:3315433-3315737 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 224
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 27, 132

Conread position: 499-786
Cow position: chr13:23960566-23960864 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 499-787
Cow position: chr13:15234150-15233863 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 40, 20

Conread position: 499-787
Cow position: chr13:20705963-20706268 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 26

Conread position: 499-787
Cow position: chr13:45022968-45023272 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 499-787
Cow position: chr13:54702430-54702123 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 500-786
Cow position: chr13:54381696-54381982 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 39, 19

Conread position: 501-729
Cow position: chr13:25817751-25817538 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 37, 88

Conread position: 501-787
Cow position: chr13:42200856-42200556 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 37, 18

Conread position: 508-702
Cow position: chr13:5713525-5713339 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 31, 81

Conread position: 508-709
Cow position: chr13:43184641-43184840 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 164
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 17, 79

Conread position: 508-719
Cow position: chr13:34263142-34263347 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 31, 80

Conread position: 508-773
Cow position: chr13:17816002-17815729 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 101

Conread position: 508-787
Cow position: chr13:24369816-24369518 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 170

Conread position: 510-787
Cow position: chr13:43480290-43479997 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 282

Conread position: 513-706
Cow position: chr13:18852302-18852115 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 26, 96

Conread position: 518-718
Cow position: chr13:12202586-12202388 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 70

Conread position: 519-718
Cow position: chr13:18170366-18170564 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 19, 70

Conread position: 520-706
Cow position: chr13:52199308-52199121 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 157
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 65

Conread position: 520-719
Cow position: chr13:17347026-17346826 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 19, 78

Conread position: 520-719
Cow position: chr13:18172559-18172360 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 82

Conread position: 521-706
Cow position: chr13:22025483-22025674 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 156
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 17, 83

Conread position: 523-787
Cow position: chr13:37804095-37803828 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 16, 43

Conread position: 527-787
Cow position: chr13:15528819-15529097 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 10

Conread position: 538-709
Cow position: chr13:2302638-2302809 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 106, 21

Conread position: 543-703
Cow position: chr13:48165234-48165386 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 555-709
Cow position: chr13:21189464-21189309 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 119, 0

Conread position: 555-710
Cow position: chr13:49503345-49503500 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 129
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 119, 71

Conread position: 566-787
Cow position: chr13:20473515-20473745 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 108, 83

Conread position: 584-719
Cow position: chr13:18697003-18696865 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 62

Conread position: 593-710
Cow position: chr13:26698348-26698467 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 103
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 69, 0

Conread position: 593-719
Cow position: chr13:17568950-17569078 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 593-786
Cow position: chr13:10098841-10099050 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 597-776
Cow position: chr13:20264766-20264951 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 158

Conread position: 597-780
Cow position: chr13:17966064-17966264 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 77, 0

Conread position: 599-718
Cow position: chr13:11381579-11381697 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 75, 91

Show alignments to all cow chromosomes.