Cow genome map
| Conread name: | Tra1-TCH01A040030 |
| Conread position: | 254-629 |
| Cow position: | chr14:30760744-30760375 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 254-709 |
| Cow position: | chr14:10907261-10906804 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 254-718 |
| Cow position: | chr14:39774520-39774969 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 267-710 |
| Cow position: | chr14:33791730-33791274 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 19 |
| Conread position: | 268-474 |
| Cow position: | chr14:41719615-41719825 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 268-526 |
| Cow position: | chr14:49411740-49411989 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 268-672 |
| Cow position: | chr14:36776126-36775732 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 268-698 |
| Cow position: | chr14:41471445-41471872 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 268-702 |
| Cow position: | chr14:15054470-15054893 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 108 |
| Conread position: | 268-704 |
| Cow position: | chr14:33462679-33462253 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 268-718 |
| Cow position: | chr14:25886024-25885590 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 5 |
| Conread position: | 268-719 |
| Cow position: | chr14:46075108-46074661 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 268-737 |
| Cow position: | chr14:40230116-40230578 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 268-741 |
| Cow position: | chr14:24992337-24991880 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 268-787 |
| Cow position: | chr14:19189561-19189038 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 269-783 |
| Cow position: | chr14:27792056-27791542 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 273-787 |
| Cow position: | chr14:34199317-34199849 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 274-698 |
| Cow position: | chr14:28090458-28090876 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 275-706 |
| Cow position: | chr14:48400293-48399876 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 276-687 |
| Cow position: | chr14:22583655-22583253 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 276-787 |
| Cow position: | chr14:33714153-33714684 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 58 |
| Conread position: | 287-719 |
| Cow position: | chr14:32371239-32371665 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 157 |
| Conread position: | 288-785 |
| Cow position: | chr14:8784678-8784192 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 174 |
| Conread position: | 296-718 |
| Cow position: | chr14:42596873-42596461 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 306-710 |
| Cow position: | chr14:20640136-20640539 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 154 |
| Conread position: | 306-710 |
| Cow position: | chr14:39779231-39778843 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 96 |
| Conread position: | 333-776 |
| Cow position: | chr14:34096138-34096562 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 33 |
| Conread position: | 340-710 |
| Cow position: | chr14:22989485-22989122 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 123 |
| Conread position: | 347-710 |
| Cow position: | chr14:28304339-28304696 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 107 |
| Conread position: | 355-709 |
| Cow position: | chr14:37624052-37624396 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 184, 91 |
| Conread position: | 358-718 |
| Cow position: | chr14:27591516-27591874 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 145, 186 |
| Conread position: | 360-718 |
| Cow position: | chr14:36440333-36439992 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 361-706 |
| Cow position: | chr14:26432820-26433148 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 178, 80 |
| Conread position: | 422-687 |
| Cow position: | chr14:34082790-34083042 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 41 |
| Conread position: | 425-722 |
| Cow position: | chr14:48427442-48427149 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 428-791 |
| Cow position: | chr14:39769860-39770244 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 498-762 |
| Cow position: | chr14:11819825-11820101 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 104 |
| Conread position: | 499-709 |
| Cow position: | chr14:16834628-16834414 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 39, 95 |
| Conread position: | 499-729 |
| Cow position: | chr14:41809354-41809587 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 500-715 |
| Cow position: | chr14:37333988-37333773 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 39, 111 |
| Conread position: | 501-785 |
| Cow position: | chr14:33751807-33751531 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 503-774 |
| Cow position: | chr14:3195145-3194866 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 68 |
| Conread position: | 507-679 |
| Cow position: | chr14:30926995-30926821 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 508-718 |
| Cow position: | chr14:24922395-24922181 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 510-709 |
| Cow position: | chr14:23107613-23107416 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 145, 34 |
| Conread position: | 513-719 |
| Cow position: | chr14:37678714-37678923 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 24, 133 |
| Conread position: | 513-772 |
| Cow position: | chr14:3437274-3437020 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 159, 82 |
| Conread position: | 519-781 |
| Cow position: | chr14:37890128-37889861 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 519-787 |
| Cow position: | chr14:24796145-24796439 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 520-737 |
| Cow position: | chr14:11043211-11043429 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 127 |
| Conread position: | 522-710 |
| Cow position: | chr14:8750349-8750163 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 529-737 |
| Cow position: | chr14:11846766-11846557 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 112, 8 |
| Conread position: | 536-729 |
| Cow position: | chr14:14979443-14979638 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 109, 64 |
| Conread position: | 537-709 |
| Cow position: | chr14:31785235-31785056 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 537-786 |
| Cow position: | chr14:40433180-40432920 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 137, 12 |
| Conread position: | 538-707 |
| Cow position: | chr14:34984122-34983954 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 139, 79 |
| Conread position: | 546-705 |
| Cow position: | chr14:31479104-31479257 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 63 |
| Conread position: | 570-786 |
| Cow position: | chr14:20826698-20826485 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 600-786 |
| Cow position: | chr14:36254508-36254701 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.