Cow genome map
| Conread name: | Tra1-TCH01A040030 |
| Conread position: | 252-445 |
| Cow position: | chr15:12723809-12723610 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 252-710 |
| Cow position: | chr15:15707535-15707976 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 267-709 |
| Cow position: | chr15:10570046-10570477 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 267-787 |
| Cow position: | chr15:13669335-13669821 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 267-788 |
| Cow position: | chr15:39090829-39090336 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 20 |
| Conread position: | 268-555 |
| Cow position: | chr15:5913194-5912895 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 268-636 |
| Cow position: | chr15:16927482-16927871 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 268-706 |
| Cow position: | chr15:2534131-2534566 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 268-706 |
| Cow position: | chr15:3892984-3893415 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 268-709 |
| Cow position: | chr15:10336311-10335892 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 268-710 |
| Cow position: | chr15:1831136-1830695 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 19 |
| Conread position: | 268-728 |
| Cow position: | chr15:3734705-3734249 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 268-782 |
| Cow position: | chr15:26078799-26079308 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 268-787 |
| Cow position: | chr15:6530269-6530807 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 268-787 |
| Cow position: | chr15:14505993-14505472 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 268-787 |
| Cow position: | chr15:50302773-50302223 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 268-788 |
| Cow position: | chr15:28039313-28038815 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 269-461 |
| Cow position: | chr15:26921828-26922025 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 269-584 |
| Cow position: | chr15:276311-276012 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 269-696 |
| Cow position: | chr15:42143417-42143004 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 269-706 |
| Cow position: | chr15:14871307-14870882 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 272-787 |
| Cow position: | chr15:22532803-22532293 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 273-710 |
| Cow position: | chr15:10456445-10456878 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 273-712 |
| Cow position: | chr15:1128546-1128127 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 274-710 |
| Cow position: | chr15:30046974-30047408 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 279-786 |
| Cow position: | chr15:25208209-25208715 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 280-750 |
| Cow position: | chr15:23332307-23332784 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 7 |
| Conread position: | 312-676 |
| Cow position: | chr15:5658689-5658329 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 319-703 |
| Cow position: | chr15:47822303-47821951 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 15 |
| Conread position: | 354-709 |
| Cow position: | chr15:13545580-13545244 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 25, 120 |
| Conread position: | 359-709 |
| Cow position: | chr15:26421123-26421464 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 9, 91 |
| Conread position: | 360-787 |
| Cow position: | chr15:46563001-46563443 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 67 |
| Conread position: | 364-717 |
| Cow position: | chr15:20472073-20472418 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 99 |
| Conread position: | 367-710 |
| Cow position: | chr15:34104736-34104405 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 96 |
| Conread position: | 377-787 |
| Cow position: | chr15:20486749-20487162 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 390-727 |
| Cow position: | chr15:25584633-25584971 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 277 |
| Conread position: | 390-787 |
| Cow position: | chr15:16543017-16543406 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 73 |
| Conread position: | 391-718 |
| Cow position: | chr15:46868263-46868585 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 82 |
| Conread position: | 407-719 |
| Cow position: | chr15:3699854-3700160 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 56 |
| Conread position: | 428-710 |
| Cow position: | chr15:23486764-23487033 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 110, 35 |
| Conread position: | 464-776 |
| Cow position: | chr15:5730318-5729990 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 5, 123 |
| Conread position: | 482-724 |
| Cow position: | chr15:38806138-38806384 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 496-709 |
| Cow position: | chr15:27247860-27247637 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 499-709 |
| Cow position: | chr15:17683372-17683163 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 499-709 |
| Cow position: | chr15:40957923-40957713 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 91 |
| Conread position: | 499-718 |
| Cow position: | chr15:11658221-11658443 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 499-720 |
| Cow position: | chr15:52611657-52611433 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 499-759 |
| Cow position: | chr15:23703117-23702848 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 118 |
| Conread position: | 499-785 |
| Cow position: | chr15:30316248-30316524 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 499-787 |
| Cow position: | chr15:13515713-13515407 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 499-787 |
| Cow position: | chr15:16307760-16307463 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 200 |
| Conread position: | 499-787 |
| Cow position: | chr15:23767921-23768216 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 40, 90 |
| Conread position: | 500-785 |
| Cow position: | chr15:26896369-26896651 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 500-787 |
| Cow position: | chr15:29604374-29604659 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 501-710 |
| Cow position: | chr15:43913742-43913956 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 503-737 |
| Cow position: | chr15:33285222-33284986 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 37, 94 |
| Conread position: | 508-709 |
| Cow position: | chr15:36259256-36259467 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 508-730 |
| Cow position: | chr15:15846168-15845945 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 178 |
| Conread position: | 510-679 |
| Cow position: | chr15:21421274-21421110 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 518-709 |
| Cow position: | chr15:6970311-6970124 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 521-706 |
| Cow position: | chr15:39598560-39598381 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 527-776 |
| Cow position: | chr15:20082076-20081823 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 164 |
| Conread position: | 529-786 |
| Cow position: | chr15:20390964-20391233 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 10, 83 |
| Conread position: | 529-787 |
| Cow position: | chr15:42788840-42789107 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 533-787 |
| Cow position: | chr15:47843797-47844052 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 151 |
| Conread position: | 543-787 |
| Cow position: | chr15:5071801-5072043 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 547-787 |
| Cow position: | chr15:23696622-23696870 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 127, 40 |
| Conread position: | 550-710 |
| Cow position: | chr15:5420590-5420746 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 554-787 |
| Cow position: | chr15:33643374-33643131 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 157, 33 |
| Conread position: | 555-785 |
| Cow position: | chr15:23275826-23275585 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 560-710 |
| Cow position: | chr15:25907195-25907052 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 562-780 |
| Cow position: | chr15:38103610-38103837 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 112, 70 |
| Conread position: | 563-727 |
| Cow position: | chr15:5715831-5715666 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 103, 24 |
| Conread position: | 577-776 |
| Cow position: | chr15:275912-275705 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 115, 99 |
| Conread position: | 584-785 |
| Cow position: | chr15:8354305-8354084 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 585-788 |
| Cow position: | chr15:36888084-36887875 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 119, 88 |
| Conread position: | 590-787 |
| Cow position: | chr15:6905317-6905117 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 127, 64 |
| Conread position: | 593-787 |
| Cow position: | chr15:26117762-26117563 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 81, 19 |
| Conread position: | 595-710 |
| Cow position: | chr15:16261564-16261448 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 611-786 |
| Cow position: | chr15:24981958-24982137 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 612-787 |
| Cow position: | chr15:9879162-9879336 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 119, 98 |
Show alignments to all cow chromosomes.