Cow genome map


           Conread name:
           Tra1-TCH01A040030
        

               Conread position:
               252-445
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               98, 10
               

               Conread position:
               252-710
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 14
               

               Conread position:
               267-709
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               296
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               38, 22
               

               Conread position:
               267-787
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 20
               

               Conread position:
               267-788
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               464, 20
               

               Conread position:
               268-555
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               31, 18
               

               Conread position:
               268-636
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 18
               

               Conread position:
               268-706
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 17
               

               Conread position:
               268-706
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               288
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               36, 17
               

               Conread position:
               268-709
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-710
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 19
               

               Conread position:
               268-728
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 17
               

               Conread position:
               268-782
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 11
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               268-788
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               269-461
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               35, 19
               

               Conread position:
               269-584
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 15
               

               Conread position:
               269-696
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 19
               

               Conread position:
               269-706
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 18
               

               Conread position:
               272-787
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 15
               

               Conread position:
               273-710
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 14
               

               Conread position:
               273-712
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 14
               

               Conread position:
               274-710
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 13
               

               Conread position:
               279-786
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 8
               

               Conread position:
               280-750
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 7
               

               Conread position:
               312-676
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 153
               

               Conread position:
               319-703
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 15
               

               Conread position:
               354-709
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               242
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               25, 120
               

               Conread position:
               359-709
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               252
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               9, 91
               

               Conread position:
               360-787
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 67
               

               Conread position:
               364-717
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 99
               

               Conread position:
               367-710
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 96
               

               Conread position:
               377-787
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               290
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               390-727
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 277
               

               Conread position:
               390-787
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 73
               

               Conread position:
               391-718
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 82
               

               Conread position:
               407-719
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 56
               

               Conread position:
               428-710
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               110, 35
               

               Conread position:
               464-776
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               247
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               5, 123
               

               Conread position:
               482-724
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               61, 37
               

               Conread position:
               496-709
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               43, 90
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               40, 51
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 91
               

               Conread position:
               499-718
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               499-720
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               499-759
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 118
               

               Conread position:
               499-785
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               214
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               41, 20
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 200
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               221
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               40, 90
               

               Conread position:
               500-785
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 19
               

               Conread position:
               500-787
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               38, 77
               

               Conread position:
               501-710
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               503-737
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               184
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               37, 94
               

               Conread position:
               508-709
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               30, 106
               

               Conread position:
               508-730
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               30, 178
               

               Conread position:
               510-679
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 9
               

               Conread position:
               518-709
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               21, 82
               

               Conread position:
               521-706
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               18, 56
               

               Conread position:
               527-776
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 164
               

               Conread position:
               529-786
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               10, 83
               

               Conread position:
               529-787
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               10, 29
               

               Conread position:
               533-787
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 151
               

               Conread position:
               543-787
               

               Cow position:
               
               

               Alignm length:
               249
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               98, 44
               

               Conread position:
               547-787
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               127, 40
               

               Conread position:
               550-710
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               554-787
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               157, 33
               

               Conread position:
               555-785
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               17, 104
               

               Conread position:
               560-710
               

               Cow position:
               
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               19, 90
               

               Conread position:
               562-780
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               177
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               112, 70
               

               Conread position:
               563-727
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               103, 24
               

               Conread position:
               577-776
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               115, 99
               

               Conread position:
               584-785
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               585-788
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               119, 88
               

               Conread position:
               590-787
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               127, 64
               

               Conread position:
               593-787
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               81, 19
               

               Conread position:
               595-710
               

               Cow position:
               
               

               Alignm length:
               118
               

               Alignm identity:
               98
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               16, 32
               

               Conread position:
               611-786
               

               Cow position:
               
               

               Alignm length:
               180
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               612-787
               

               Cow position:
               
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               119, 98
               
Show alignments to all cow chromosomes.