Cow genome map
Conread name: | Tra1-TCH01A040030 |
Conread position: | 254-461 |
Cow position: | chr17:27978703-27978911 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 158 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 45, 15 |
Conread position: | 267-781 |
Cow position: | chr17:29715629-29715115 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 20 |
Conread position: | 268-710 |
Cow position: | chr17:25542245-25541825 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 21 |
Conread position: | 268-787 |
Cow position: | chr17:23101653-23101130 (view UCSC Genome Browser custom track) |
Alignm length: | 537 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 19 |
Conread position: | 268-787 |
Cow position: | chr17:32994050-32993535 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 19 |
Conread position: | 272-585 |
Cow position: | chr17:38829650-38829956 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 16 |
Conread position: | 273-710 |
Cow position: | chr17:20022944-20022521 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 16 |
Conread position: | 280-708 |
Cow position: | chr17:27698127-27697708 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 289 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 20, 7 |
Conread position: | 285-787 |
Cow position: | chr17:24553582-24554085 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 112 |
Conread position: | 294-706 |
Cow position: | chr17:923467-923869 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 245, 176 |
Conread position: | 299-709 |
Cow position: | chr17:19998728-19999133 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 240, 113 |
Conread position: | 309-719 |
Cow position: | chr17:5997505-5997094 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 279 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 48, 140 |
Conread position: | 311-787 |
Cow position: | chr17:29083809-29084263 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 153 |
Conread position: | 324-720 |
Cow position: | chr17:9698096-9697693 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 43 |
Conread position: | 326-706 |
Cow position: | chr17:13922098-13922470 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 202, 48 |
Conread position: | 347-791 |
Cow position: | chr17:15103237-15102801 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 192, 11 |
Conread position: | 361-782 |
Cow position: | chr17:23880171-23879760 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 283 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 7, 44 |
Conread position: | 366-787 |
Cow position: | chr17:11397329-11397755 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 173, 97 |
Conread position: | 369-718 |
Cow position: | chr17:19455632-19455308 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 242 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 170, 55 |
Conread position: | 378-696 |
Cow position: | chr17:44924504-44924205 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 225 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 161, 84 |
Conread position: | 388-706 |
Cow position: | chr17:1061377-1061068 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 73 |
Conread position: | 407-737 |
Cow position: | chr17:38614660-38614981 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 233 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 131, 60 |
Conread position: | 407-787 |
Cow position: | chr17:24973650-24974030 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 56 |
Conread position: | 493-719 |
Cow position: | chr17:12447618-12447398 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 171 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 180, 91 |
Conread position: | 496-787 |
Cow position: | chr17:7810956-7810666 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 166 |
Conread position: | 499-687 |
Cow position: | chr17:23245998-23246184 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 145 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 175, 43 |
Conread position: | 499-696 |
Cow position: | chr17:4721273-4721472 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 158 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 39, 86 |
Conread position: | 499-709 |
Cow position: | chr17:33999258-33999054 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 148 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 40, 97 |
Conread position: | 499-710 |
Cow position: | chr17:21004045-21003833 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 176 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 111 |
Conread position: | 499-712 |
Cow position: | chr17:10220267-10220474 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 157 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 40, 20 |
Conread position: | 499-718 |
Cow position: | chr17:2079547-2079764 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 159 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 40, 9 |
Conread position: | 499-720 |
Cow position: | chr17:39012504-39012732 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 162 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 499-728 |
Cow position: | chr17:24787235-24787010 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 177 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 40, 145 |
Conread position: | 499-729 |
Cow position: | chr17:35126500-35126724 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 171 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 40, 80 |
Conread position: | 499-769 |
Cow position: | chr17:20835379-20835652 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 233 |
Conread position: | 499-786 |
Cow position: | chr17:21115162-21114866 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 219 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 40, 79 |
Conread position: | 499-786 |
Cow position: | chr17:24587404-24587712 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 499-786 |
Cow position: | chr17:30713139-30713433 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 223 |
Alignm E-value: | 8.99998e-41 |
Alignm gaps (pig, cow): | 40, 55 |
Conread position: | 499-787 |
Cow position: | chr17:26818666-26818369 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 20 |
Conread position: | 508-709 |
Cow position: | chr17:27429373-27429570 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 166 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 145 |
Conread position: | 508-788 |
Cow position: | chr17:25128554-25128263 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 49 |
Conread position: | 512-696 |
Cow position: | chr17:31231315-31231131 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 149 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 27, 61 |
Conread position: | 512-719 |
Cow position: | chr17:18824588-18824798 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 156 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 13, 91 |
Conread position: | 513-705 |
Cow position: | chr17:22806738-22806548 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 153 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 26, 6 |
Conread position: | 513-785 |
Cow position: | chr17:32273882-32273600 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 210 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 163, 19 |
Conread position: | 517-787 |
Cow position: | chr17:12590968-12591263 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 0 |
Conread position: | 519-728 |
Cow position: | chr17:3503391-3503596 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 170 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 12, 70 |
Conread position: | 523-787 |
Cow position: | chr17:12536658-12536376 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 211 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 16, 79 |
Conread position: | 524-710 |
Cow position: | chr17:34208009-34207823 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 159 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 84 |
Conread position: | 525-785 |
Cow position: | chr17:908558-908827 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 77 |
Conread position: | 527-710 |
Cow position: | chr17:1063003-1063175 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 143 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 12, 67 |
Conread position: | 539-710 |
Cow position: | chr17:20990367-20990200 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 136 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 135, 56 |
Conread position: | 540-787 |
Cow position: | chr17:1634654-1634403 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 190 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 149, 18 |
Conread position: | 544-727 |
Cow position: | chr17:21918042-21917861 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 134 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 101, 43 |
Conread position: | 548-742 |
Cow position: | chr17:10037279-10037475 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 153 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 99, 29 |
Conread position: | 558-791 |
Cow position: | chr17:3467615-3467845 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 167 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 118, 30 |
Conread position: | 560-719 |
Cow position: | chr17:4967958-4968117 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 125 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 560-719 |
Cow position: | chr17:31037532-31037375 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 130 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 114, 41 |
Conread position: | 577-787 |
Cow position: | chr17:30728382-30728593 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 157 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 32, 71 |
Conread position: | 601-784 |
Cow position: | chr17:23563904-23563710 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 141 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 74, 25 |
Conread position: | 601-787 |
Cow position: | chr17:33658185-33657979 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 152 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 602-787 |
Cow position: | chr17:35339029-35338832 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 143 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 618-706 |
Cow position: | chr17:25514221-25514132 (view UCSC Genome Browser custom track) |
Alignm length: | 90 |
Alignm identity: | 78 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.