Cow genome map

Conread name: Tra1-TCH01A040030

Conread position: 254-461
Cow position: chr17:27978703-27978911 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 45, 15

Conread position: 267-781
Cow position: chr17:29715629-29715115 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 20

Conread position: 268-710
Cow position: chr17:25542245-25541825 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 21

Conread position: 268-787
Cow position: chr17:23101653-23101130 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 268-787
Cow position: chr17:32994050-32993535 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 19

Conread position: 272-585
Cow position: chr17:38829650-38829956 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 16

Conread position: 273-710
Cow position: chr17:20022944-20022521 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 16

Conread position: 280-708
Cow position: chr17:27698127-27697708 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 289
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 7

Conread position: 285-787
Cow position: chr17:24553582-24554085 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 112

Conread position: 294-706
Cow position: chr17:923467-923869 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 176

Conread position: 299-709
Cow position: chr17:19998728-19999133 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 113

Conread position: 309-719
Cow position: chr17:5997505-5997094 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 279
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 48, 140

Conread position: 311-787
Cow position: chr17:29083809-29084263 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 153

Conread position: 324-720
Cow position: chr17:9698096-9697693 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 43

Conread position: 326-706
Cow position: chr17:13922098-13922470 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 48

Conread position: 347-791
Cow position: chr17:15103237-15102801 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 11

Conread position: 361-782
Cow position: chr17:23880171-23879760 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 283
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 7, 44

Conread position: 366-787
Cow position: chr17:11397329-11397755 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 97

Conread position: 369-718
Cow position: chr17:19455632-19455308 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 170, 55

Conread position: 378-696
Cow position: chr17:44924504-44924205 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 225
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 161, 84

Conread position: 388-706
Cow position: chr17:1061377-1061068 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 73

Conread position: 407-737
Cow position: chr17:38614660-38614981 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 131, 60

Conread position: 407-787
Cow position: chr17:24973650-24974030 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 56

Conread position: 493-719
Cow position: chr17:12447618-12447398 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 180, 91

Conread position: 496-787
Cow position: chr17:7810956-7810666 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 166

Conread position: 499-687
Cow position: chr17:23245998-23246184 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 175, 43

Conread position: 499-696
Cow position: chr17:4721273-4721472 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 39, 86

Conread position: 499-709
Cow position: chr17:33999258-33999054 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 97

Conread position: 499-710
Cow position: chr17:21004045-21003833 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 111

Conread position: 499-712
Cow position: chr17:10220267-10220474 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 20

Conread position: 499-718
Cow position: chr17:2079547-2079764 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 40, 9

Conread position: 499-720
Cow position: chr17:39012504-39012732 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 39, 0

Conread position: 499-728
Cow position: chr17:24787235-24787010 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 40, 145

Conread position: 499-729
Cow position: chr17:35126500-35126724 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 40, 80

Conread position: 499-769
Cow position: chr17:20835379-20835652 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 233

Conread position: 499-786
Cow position: chr17:21115162-21114866 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 219
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 40, 79

Conread position: 499-786
Cow position: chr17:24587404-24587712 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 499-786
Cow position: chr17:30713139-30713433 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 223
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 40, 55

Conread position: 499-787
Cow position: chr17:26818666-26818369 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 20

Conread position: 508-709
Cow position: chr17:27429373-27429570 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 145

Conread position: 508-788
Cow position: chr17:25128554-25128263 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 49

Conread position: 512-696
Cow position: chr17:31231315-31231131 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 149
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 27, 61

Conread position: 512-719
Cow position: chr17:18824588-18824798 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 91

Conread position: 513-705
Cow position: chr17:22806738-22806548 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 26, 6

Conread position: 513-785
Cow position: chr17:32273882-32273600 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 163, 19

Conread position: 517-787
Cow position: chr17:12590968-12591263 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 519-728
Cow position: chr17:3503391-3503596 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 12, 70

Conread position: 523-787
Cow position: chr17:12536658-12536376 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 16, 79

Conread position: 524-710
Cow position: chr17:34208009-34207823 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 84

Conread position: 525-785
Cow position: chr17:908558-908827 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 77

Conread position: 527-710
Cow position: chr17:1063003-1063175 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 12, 67

Conread position: 539-710
Cow position: chr17:20990367-20990200 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 135, 56

Conread position: 540-787
Cow position: chr17:1634654-1634403 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 149, 18

Conread position: 544-727
Cow position: chr17:21918042-21917861 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 101, 43

Conread position: 548-742
Cow position: chr17:10037279-10037475 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 99, 29

Conread position: 558-791
Cow position: chr17:3467615-3467845 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 118, 30

Conread position: 560-719
Cow position: chr17:4967958-4968117 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 560-719
Cow position: chr17:31037532-31037375 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 130
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 114, 41

Conread position: 577-787
Cow position: chr17:30728382-30728593 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 71

Conread position: 601-784
Cow position: chr17:23563904-23563710 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 74, 25

Conread position: 601-787
Cow position: chr17:33658185-33657979 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 602-787
Cow position: chr17:35339029-35338832 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 618-706
Cow position: chr17:25514221-25514132 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 78
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 0

Show alignments to all cow chromosomes.