Cow genome map


           Conread name:
           Tra1-TCH01A040030
        

               Conread position:
               254-461
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               45, 15
               

               Conread position:
               267-781
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 20
               

               Conread position:
               268-710
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 21
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 19
               

               Conread position:
               272-585
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 16
               

               Conread position:
               273-710
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               280-708
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               20, 7
               

               Conread position:
               285-787
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 112
               

               Conread position:
               294-706
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               245, 176
               

               Conread position:
               299-709
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 113
               

               Conread position:
               309-719
               

               Cow position:
               
               

               Alignm length:
               420
               

               Alignm identity:
               279
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               48, 140
               

               Conread position:
               311-787
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 153
               

               Conread position:
               324-720
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 43
               

               Conread position:
               326-706
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 48
               

               Conread position:
               347-791
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 11
               

               Conread position:
               361-782
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               283
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               7, 44
               

               Conread position:
               366-787
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 97
               

               Conread position:
               369-718
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               170, 55
               

               Conread position:
               378-696
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               161, 84
               

               Conread position:
               388-706
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 73
               

               Conread position:
               407-737
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               233
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               131, 60
               

               Conread position:
               407-787
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 56
               

               Conread position:
               493-719
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               180, 91
               

               Conread position:
               496-787
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 166
               

               Conread position:
               499-687
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               175, 43
               

               Conread position:
               499-696
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               39, 86
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               40, 97
               

               Conread position:
               499-710
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 111
               

               Conread position:
               499-712
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               499-718
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               40, 9
               

               Conread position:
               499-720
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               499-728
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               177
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               40, 145
               

               Conread position:
               499-729
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               40, 80
               

               Conread position:
               499-769
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 233
               

               Conread position:
               499-786
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               219
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               40, 79
               

               Conread position:
               499-786
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               499-786
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               223
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               40, 55
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               508-709
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               166
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 145
               

               Conread position:
               508-788
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 49
               

               Conread position:
               512-696
               

               Cow position:
               
               

               Alignm length:
               186
               

               Alignm identity:
               149
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               27, 61
               

               Conread position:
               512-719
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               13, 91
               

               Conread position:
               513-705
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               26, 6
               

               Conread position:
               513-785
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               163, 19
               

               Conread position:
               517-787
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 0
               

               Conread position:
               519-728
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               12, 70
               

               Conread position:
               523-787
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               16, 79
               

               Conread position:
               524-710
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               159
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 84
               

               Conread position:
               525-785
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 77
               

               Conread position:
               527-710
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               12, 67
               

               Conread position:
               539-710
               

               Cow position:
               
               

               Alignm length:
               173
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               135, 56
               

               Conread position:
               540-787
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               149, 18
               

               Conread position:
               544-727
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               101, 43
               

               Conread position:
               548-742
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               99, 29
               

               Conread position:
               558-791
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               118, 30
               

               Conread position:
               560-719
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               560-719
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               114, 41
               

               Conread position:
               577-787
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               32, 71
               

               Conread position:
               601-784
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               74, 25
               

               Conread position:
               601-787
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               602-787
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               618-706
               

               Cow position:
               
               

               Alignm length:
               90
               

               Alignm identity:
               78
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               56, 0
               
Show alignments to all cow chromosomes.