Cow genome map

Conread name: Tra1-TCH01A040030

Conread position: 253-786
Cow position: chr18:33299382-33299918 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 15

Conread position: 267-385
Cow position: chr18:48501943-48502061 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 30, 21

Conread position: 267-461
Cow position: chr18:4579008-4578813 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 26, 19

Conread position: 267-787
Cow position: chr18:31082848-31082333 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 20

Conread position: 268-456
Cow position: chr18:28929610-28929422 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 155
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 20

Conread position: 268-461
Cow position: chr18:9557539-9557347 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 17, 0

Conread position: 268-695
Cow position: chr18:29648277-29648692 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 21

Conread position: 268-699
Cow position: chr18:12118356-12117931 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 80

Conread position: 268-699
Cow position: chr18:19123662-19124090 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 289
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 37, 19

Conread position: 268-703
Cow position: chr18:56165485-56165898 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 287
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 36, 20

Conread position: 268-704
Cow position: chr18:20125796-20126221 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 19

Conread position: 268-709
Cow position: chr18:16418196-16417782 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 22

Conread position: 268-710
Cow position: chr18:9089200-9089619 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 17

Conread position: 268-711
Cow position: chr18:29357151-29356704 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 20

Conread position: 268-719
Cow position: chr18:33272440-33272865 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 19

Conread position: 268-783
Cow position: chr18:35012817-35012306 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 268-786
Cow position: chr18:47183802-47183279 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 268-787
Cow position: chr18:7649481-7650000 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 268-787
Cow position: chr18:11866837-11867352 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 19

Conread position: 268-787
Cow position: chr18:55692299-55692831 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 221

Conread position: 268-790
Cow position: chr18:55119358-55119890 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 269-605
Cow position: chr18:14121565-14121897 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 229
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 17

Conread position: 269-679
Cow position: chr18:81253-81648 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 46

Conread position: 269-697
Cow position: chr18:24342113-24342530 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 269-787
Cow position: chr18:40758701-40759222 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 20

Conread position: 270-787
Cow position: chr18:9974835-9974313 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 171

Conread position: 271-781
Cow position: chr18:11183430-11183951 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 18

Conread position: 272-620
Cow position: chr18:32283368-32283710 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 216
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 30, 15

Conread position: 272-706
Cow position: chr18:11376857-11377282 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 272-707
Cow position: chr18:32284887-32285308 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 272-707
Cow position: chr18:32301032-32301453 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 272-710
Cow position: chr18:30248625-30248215 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 15

Conread position: 276-785
Cow position: chr18:20641982-20641483 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 11

Conread position: 279-786
Cow position: chr18:28658409-28657897 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 8

Conread position: 287-744
Cow position: chr18:7930635-7930179 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 29

Conread position: 288-710
Cow position: chr18:28101133-28101553 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 176

Conread position: 303-780
Cow position: chr18:49655234-49655692 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 142

Conread position: 322-784
Cow position: chr18:38686644-38687092 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 84

Conread position: 323-710
Cow position: chr18:45570571-45570934 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 65

Conread position: 348-710
Cow position: chr18:13508156-13507817 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 20

Conread position: 349-719
Cow position: chr18:23766851-23766482 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 79

Conread position: 352-710
Cow position: chr18:6881757-6881428 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 83

Conread position: 352-710
Cow position: chr18:56362028-56361681 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 107

Conread position: 354-789
Cow position: chr18:9010307-9010725 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 14

Conread position: 360-719
Cow position: chr18:55462128-55461777 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 28

Conread position: 381-787
Cow position: chr18:55505005-55505421 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 82

Conread position: 382-668
Cow position: chr18:35535683-35535404 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 157, 83

Conread position: 385-722
Cow position: chr18:5486856-5487182 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 86

Conread position: 385-781
Cow position: chr18:29796828-29796419 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 284
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 62, 76

Conread position: 406-676
Cow position: chr18:11671435-11671700 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 58

Conread position: 412-787
Cow position: chr18:54974357-54973992 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 261
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 127, 7

Conread position: 414-718
Cow position: chr18:10575746-10576032 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 125, 49

Conread position: 419-706
Cow position: chr18:4666569-4666294 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 255, 44

Conread position: 490-714
Cow position: chr18:43823249-43823024 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 49, 178

Conread position: 492-710
Cow position: chr18:33407317-33407537 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 32

Conread position: 499-709
Cow position: chr18:3133029-3132835 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 40, 34

Conread position: 499-709
Cow position: chr18:31562677-31562474 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 152, 20

Conread position: 499-709
Cow position: chr18:48290725-48290521 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 39, 103

Conread position: 499-710
Cow position: chr18:25647536-25647330 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 40, 25

Conread position: 499-710
Cow position: chr18:51211895-51212102 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 40, 20

Conread position: 499-785
Cow position: chr18:50082533-50082244 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 110

Conread position: 499-787
Cow position: chr18:11811692-11811965 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 51

Conread position: 499-787
Cow position: chr18:11831851-11832135 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 40, 112

Conread position: 499-787
Cow position: chr18:15172746-15173028 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 40, 34

Conread position: 499-787
Cow position: chr18:19619660-19619957 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 499-787
Cow position: chr18:44802170-44801874 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 39, 20

Conread position: 499-787
Cow position: chr18:55001026-55000726 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 39, 20

Conread position: 500-709
Cow position: chr18:23808159-23807952 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 39, 96

Conread position: 500-710
Cow position: chr18:5578018-5578228 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 42, 18

Conread position: 501-710
Cow position: chr18:38985402-38985613 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 508-787
Cow position: chr18:11684712-11684997 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 220
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 31, 21

Conread position: 508-787
Cow position: chr18:28924110-28923832 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 90

Conread position: 510-787
Cow position: chr18:56183662-56183950 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 15

Conread position: 513-702
Cow position: chr18:12113640-12113463 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 26, 43

Conread position: 516-787
Cow position: chr18:33158693-33158957 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 202
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 70

Conread position: 517-687
Cow position: chr18:16184695-16184533 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 518-689
Cow position: chr18:20797832-20798000 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 20, 81

Conread position: 519-789
Cow position: chr18:46727329-46727606 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 523-787
Cow position: chr18:48713292-48713566 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 151, 10

Conread position: 526-728
Cow position: chr18:12023893-12023695 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 162
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 62

Conread position: 527-706
Cow position: chr18:8164299-8164118 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 148
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 108

Conread position: 529-787
Cow position: chr18:42479848-42479571 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 16, 9

Conread position: 537-709
Cow position: chr18:21205118-21205283 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 141, 50

Conread position: 542-710
Cow position: chr18:33007813-33007982 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 137
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 132, 0

Conread position: 543-786
Cow position: chr18:17391216-17390979 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 193
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 170, 45

Conread position: 546-787
Cow position: chr18:18592233-18592488 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 100

Conread position: 549-711
Cow position: chr18:14085224-14085381 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 37

Conread position: 554-710
Cow position: chr18:33896654-33896508 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 120, 41

Conread position: 571-787
Cow position: chr18:1954808-1954574 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 103, 121

Conread position: 580-715
Cow position: chr18:6127287-6127151 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 7, 94

Conread position: 582-710
Cow position: chr18:15810113-15809988 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 26

Conread position: 584-706
Cow position: chr18:48451847-48451976 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 587-710
Cow position: chr18:35419608-35419732 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 87, 0

Conread position: 599-787
Cow position: chr18:52877189-52877376 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 74, 97

Conread position: 601-787
Cow position: chr18:16686525-16686320 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 73, 0

Show alignments to all cow chromosomes.