Cow genome map


           Conread name:
           Tra1-TCH01A040030
        

               Conread position:
               267-470
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               36, 21
               

               Conread position:
               267-710
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 22
               

               Conread position:
               267-727
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 20
               

               Conread position:
               268-434
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               29, 20
               

               Conread position:
               268-457
               

               Cow position:
               
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               33, 17
               

               Conread position:
               268-683
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               268-704
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-780
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 21
               

               Conread position:
               268-785
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               268-785
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               269-709
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 18
               

               Conread position:
               269-786
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 18
               

               Conread position:
               269-787
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 18
               

               Conread position:
               271-710
               

               Cow position:
               
               

               Alignm length:
               447
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 16
               

               Conread position:
               273-456
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               273-642
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               94, 85
               

               Conread position:
               279-541
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               287-710
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 159
               

               Conread position:
               288-710
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 176
               

               Conread position:
               293-628
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               62, 178
               

               Conread position:
               298-729
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 165
               

               Conread position:
               298-789
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 45
               

               Conread position:
               299-790
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 25
               

               Conread position:
               300-787
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 29
               

               Conread position:
               301-785
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 86
               

               Conread position:
               302-710
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 16
               

               Conread position:
               303-701
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 89
               

               Conread position:
               316-710
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               358, 48
               

               Conread position:
               319-787
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 145
               

               Conread position:
               322-728
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 141
               

               Conread position:
               332-712
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 98
               

               Conread position:
               357-735
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               182, 78
               

               Conread position:
               359-709
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               180, 90
               

               Conread position:
               359-777
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 47
               

               Conread position:
               363-787
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 102
               

               Conread position:
               366-687
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               222
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               173, 64
               

               Conread position:
               372-739
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               156, 91
               

               Conread position:
               388-786
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 75
               

               Conread position:
               401-785
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 59
               

               Conread position:
               419-710
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               119, 43
               

               Conread position:
               496-727
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               499-672
               

               Cow position:
               
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               26, 101
               

               Conread position:
               499-704
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               54, 170
               

               Conread position:
               499-704
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               40, 89
               

               Conread position:
               499-706
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               499-706
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               499-706
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               36, 20
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               170
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 65
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               40, 99
               

               Conread position:
               499-710
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 76
               

               Conread position:
               499-710
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               40, 95
               

               Conread position:
               499-710
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               34, 17
               

               Conread position:
               499-724
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               40, 103
               

               Conread position:
               499-736
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               499-777
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               221
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               40, 97
               

               Conread position:
               499-785
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 0
               

               Conread position:
               499-786
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 142
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 84
               

               Conread position:
               499-789
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               499-789
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               175, 20
               

               Conread position:
               501-787
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 102
               

               Conread position:
               502-703
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               37, 87
               

               Conread position:
               508-787
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 16
               

               Conread position:
               509-710
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               164
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               14, 78
               

               Conread position:
               509-786
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               29, 89
               

               Conread position:
               510-776
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               29, 59
               

               Conread position:
               513-709
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               66, 114
               

               Conread position:
               513-787
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               519-787
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 173
               

               Conread position:
               521-710
               

               Cow position:
               
               

               Alignm length:
               192
               

               Alignm identity:
               159
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               522-709
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               17, 74
               

               Conread position:
               529-776
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               14, 46
               

               Conread position:
               537-714
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               137, 58
               

               Conread position:
               538-710
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               138, 63
               

               Conread position:
               538-718
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               136, 39
               

               Conread position:
               538-779
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               191
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               136, 94
               

               Conread position:
               539-703
               

               Cow position:
               
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               541-728
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               133, 105
               

               Conread position:
               543-718
               

               Cow position:
               
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               117, 52
               

               Conread position:
               544-787
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               167, 17
               

               Conread position:
               549-787
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               125, 12
               

               Conread position:
               551-787
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               180, 96
               

               Conread position:
               554-710
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               555-673
               

               Cow position:
               
               

               Alignm length:
               119
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               561-699
               

               Cow position:
               
               

               Alignm length:
               141
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               569-710
               

               Cow position:
               
               

               Alignm length:
               143
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               105, 8
               

               Conread position:
               593-787
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               8, 164
               

               Conread position:
               638-787
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               36, 0
               
Show alignments to all cow chromosomes.