Cow genome map

Conread name: Tra1-TCH01A040030

Conread position: 267-470
Cow position: chr19:49358874-49358666 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 36, 21

Conread position: 267-710
Cow position: chr19:34620511-34620087 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 22

Conread position: 267-727
Cow position: chr19:4446109-4445662 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 20

Conread position: 268-434
Cow position: chr19:39665088-39664923 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 20

Conread position: 268-457
Cow position: chr19:164308-164120 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 33, 17

Conread position: 268-683
Cow position: chr19:52457241-52456841 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 19

Conread position: 268-704
Cow position: chr19:38392308-38392739 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-780
Cow position: chr19:39750989-39751498 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 21

Conread position: 268-785
Cow position: chr19:24358723-24358208 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 19

Conread position: 268-785
Cow position: chr19:39577060-39576533 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 268-787
Cow position: chr19:5656600-5656087 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-787
Cow position: chr19:19919974-19919424 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 19

Conread position: 268-787
Cow position: chr19:36721844-36722349 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 19

Conread position: 269-709
Cow position: chr19:29627862-29627437 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 18

Conread position: 269-786
Cow position: chr19:34956186-34955662 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 18

Conread position: 269-787
Cow position: chr19:20671394-20670869 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 18

Conread position: 271-710
Cow position: chr19:5185737-5185301 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 273-456
Cow position: chr19:43733251-43733438 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 273-642
Cow position: chr19:29089720-29090088 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 240
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 94, 85

Conread position: 279-541
Cow position: chr19:51393258-51393514 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 9

Conread position: 287-710
Cow position: chr19:42240763-42240348 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 159

Conread position: 288-710
Cow position: chr19:8033267-8033689 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 176

Conread position: 293-628
Cow position: chr19:18888149-18887817 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 218
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 62, 178

Conread position: 298-729
Cow position: chr19:43431779-43431363 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 165

Conread position: 298-789
Cow position: chr19:23785730-23786230 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 45

Conread position: 299-790
Cow position: chr19:54295043-54294558 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 25

Conread position: 300-787
Cow position: chr19:44839349-44838892 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 29

Conread position: 301-785
Cow position: chr19:24061839-24062312 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 86

Conread position: 302-710
Cow position: chr19:37647296-37646894 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 16

Conread position: 303-701
Cow position: chr19:7612174-7612555 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 89

Conread position: 316-710
Cow position: chr19:17795452-17795840 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 48

Conread position: 319-787
Cow position: chr19:21198686-21199176 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 145

Conread position: 322-728
Cow position: chr19:56382712-56383101 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 141

Conread position: 332-712
Cow position: chr19:22765191-22765566 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 98

Conread position: 357-735
Cow position: chr19:53623163-53623528 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 259
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 182, 78

Conread position: 359-709
Cow position: chr19:36977315-36976971 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 246
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 180, 90

Conread position: 359-777
Cow position: chr19:25999236-25999648 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 47

Conread position: 363-787
Cow position: chr19:16096950-16096517 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 102

Conread position: 366-687
Cow position: chr19:55357666-55357980 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 222
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 173, 64

Conread position: 372-739
Cow position: chr19:18788488-18788131 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 253
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 156, 91

Conread position: 388-786
Cow position: chr19:25696576-25696194 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 75

Conread position: 401-785
Cow position: chr19:25727236-25726846 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 59

Conread position: 419-710
Cow position: chr19:25025825-25025551 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 119, 43

Conread position: 496-727
Cow position: chr19:33912902-33912665 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 43, 0

Conread position: 499-672
Cow position: chr19:12019191-12019356 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 26, 101

Conread position: 499-704
Cow position: chr19:3496440-3496239 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 54, 170

Conread position: 499-704
Cow position: chr19:17479226-17479028 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 40, 89

Conread position: 499-706
Cow position: chr19:25881041-25880832 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 499-706
Cow position: chr19:33033712-33033502 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 499-706
Cow position: chr19:55899505-55899298 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 20

Conread position: 499-709
Cow position: chr19:10545974-10545764 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 65

Conread position: 499-709
Cow position: chr19:42694722-42694934 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 40, 99

Conread position: 499-710
Cow position: chr19:10186234-10186444 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 76

Conread position: 499-710
Cow position: chr19:10213405-10213613 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 40, 95

Conread position: 499-710
Cow position: chr19:29625639-29625847 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 34, 17

Conread position: 499-724
Cow position: chr19:5913216-5912998 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 40, 103

Conread position: 499-736
Cow position: chr19:8332029-8332262 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 20

Conread position: 499-777
Cow position: chr19:1968570-1968278 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 40, 97

Conread position: 499-785
Cow position: chr19:46454585-46454882 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 0

Conread position: 499-786
Cow position: chr19:17664375-17664676 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 30

Conread position: 499-787
Cow position: chr19:35741891-35742199 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 142

Conread position: 499-787
Cow position: chr19:41584708-41585006 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 84

Conread position: 499-789
Cow position: chr19:21065513-21065801 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 216
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 40, 20

Conread position: 499-789
Cow position: chr19:55952409-55952113 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 175, 20

Conread position: 501-787
Cow position: chr19:38638065-38637781 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 102

Conread position: 502-703
Cow position: chr19:32955621-32955824 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 37, 87

Conread position: 508-787
Cow position: chr19:47671495-47671781 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 16

Conread position: 509-710
Cow position: chr19:3621172-3621374 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 164
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 78

Conread position: 509-786
Cow position: chr19:20310886-20310603 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 224
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 29, 89

Conread position: 510-776
Cow position: chr19:6049916-6049647 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 59

Conread position: 513-709
Cow position: chr19:6881130-6880932 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 66, 114

Conread position: 513-787
Cow position: chr19:9542149-9541862 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 519-787
Cow position: chr19:10706036-10706311 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 173

Conread position: 521-710
Cow position: chr19:13129638-13129816 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 159
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 18, 52

Conread position: 522-709
Cow position: chr19:36380002-36380186 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 17, 74

Conread position: 529-776
Cow position: chr19:11758837-11758590 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 189
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 14, 46

Conread position: 537-714
Cow position: chr19:25835583-25835404 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 137, 58

Conread position: 538-710
Cow position: chr19:23244746-23244577 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 139
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 138, 63

Conread position: 538-718
Cow position: chr19:20984996-20984822 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 136, 39

Conread position: 538-779
Cow position: chr19:11565377-11565131 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 136, 94

Conread position: 539-703
Cow position: chr19:52136921-52136756 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 135, 0

Conread position: 541-728
Cow position: chr19:35846672-35846859 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 133, 105

Conread position: 543-718
Cow position: chr19:22039550-22039721 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 52

Conread position: 544-787
Cow position: chr19:34000990-34001244 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 191
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 167, 17

Conread position: 549-787
Cow position: chr19:22043558-22043315 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 125, 12

Conread position: 551-787
Cow position: chr19:16105275-16105043 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 180, 96

Conread position: 554-710
Cow position: chr19:48960180-48960339 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 555-673
Cow position: chr19:48744749-48744636 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 103
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 69, 0

Conread position: 561-699
Cow position: chr19:25655441-25655301 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 113, 0

Conread position: 569-710
Cow position: chr19:24760079-24759941 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 105, 8

Conread position: 593-787
Cow position: chr19:41497806-41497609 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 8, 164

Conread position: 638-787
Cow position: chr19:23378557-23378713 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 36, 0

Show alignments to all cow chromosomes.