Cow genome map


           Conread name:
           Tra1-TCH01A040030
        

               Conread position:
               252-430
               

               Cow position:
               
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               252-719
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 14
               

               Conread position:
               254-461
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               48, 34
               

               Conread position:
               266-785
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 21
               

               Conread position:
               267-762
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 22
               

               Conread position:
               268-461
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               36, 20
               

               Conread position:
               268-632
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               29, 18
               

               Conread position:
               268-689
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-703
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 19
               

               Conread position:
               268-706
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               260, 193
               

               Conread position:
               268-709
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 20
               

               Conread position:
               268-729
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 18
               

               Conread position:
               268-740
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-786
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-786
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 18
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               268-791
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 20
               

               Conread position:
               268-791
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               272-683
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 15
               

               Conread position:
               272-710
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 17
               

               Conread position:
               272-786
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 15
               

               Conread position:
               273-787
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 14
               

               Conread position:
               276-703
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 11
               

               Conread position:
               317-737
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 147
               

               Conread position:
               319-785
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 144
               

               Conread position:
               325-710
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 139
               

               Conread position:
               374-787
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               298
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               61, 67
               

               Conread position:
               382-787
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 11
               

               Conread position:
               393-787
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 134
               

               Conread position:
               403-787
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 60
               

               Conread position:
               406-696
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               212
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               133, 57
               

               Conread position:
               411-698
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               80, 51
               

               Conread position:
               460-787
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               255
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               29, 145
               

               Conread position:
               493-674
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               499-701
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               40, 99
               

               Conread position:
               499-704
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               40, 18
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               28, 49
               

               Conread position:
               499-719
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               168
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               39, 60
               

               Conread position:
               499-728
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               499-729
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               40, 86
               

               Conread position:
               499-786
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 20
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 104
               

               Conread position:
               500-787
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 19
               

               Conread position:
               501-786
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 89
               

               Conread position:
               508-785
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               30, 156
               

               Conread position:
               509-710
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               160
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               513-719
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 83
               

               Conread position:
               517-709
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               21, 59
               

               Conread position:
               518-787
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               20, 52
               

               Conread position:
               519-776
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               533-781
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               175, 73
               

               Conread position:
               540-787
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               28, 113
               

               Conread position:
               542-709
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               132, 25
               

               Conread position:
               546-791
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               101, 39
               

               Conread position:
               554-787
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               159, 34
               

               Conread position:
               561-710
               

               Cow position:
               
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               561-786
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               115, 106
               

               Conread position:
               572-787
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               16, 190
               

               Conread position:
               576-785
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               102, 19
               

               Conread position:
               585-750
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               89, 111
               

               Conread position:
               591-786
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               602-729
               

               Cow position:
               
               

               Alignm length:
               132
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               617-787
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               626-787
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               48, 0
               
Show alignments to all cow chromosomes.