Cow genome map
Conread name: | Tra1-TCH01A040030 |
Conread position: | 252-430 |
Cow position: | chr20:10885406-10885230 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 130 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 252-719 |
Cow position: | chr20:13877160-13876697 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 14 |
Conread position: | 254-461 |
Cow position: | chr20:3294210-3294006 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 152 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 48, 34 |
Conread position: | 266-785 |
Cow position: | chr20:39742877-39743399 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 21 |
Conread position: | 267-762 |
Cow position: | chr20:22446075-22445581 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 22 |
Conread position: | 268-461 |
Cow position: | chr20:19155360-19155153 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 147 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 36, 20 |
Conread position: | 268-632 |
Cow position: | chr20:4668505-4668872 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 149 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 29, 18 |
Conread position: | 268-689 |
Cow position: | chr20:4788671-4788251 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 19 |
Conread position: | 268-703 |
Cow position: | chr20:18185137-18185557 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 19 |
Conread position: | 268-706 |
Cow position: | chr20:28439640-28440080 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 260, 193 |
Conread position: | 268-709 |
Cow position: | chr20:9267564-9267111 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 20 |
Conread position: | 268-729 |
Cow position: | chr20:19352204-19351735 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 18 |
Conread position: | 268-740 |
Cow position: | chr20:9433175-9433613 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 19 |
Conread position: | 268-786 |
Cow position: | chr20:8577811-8578339 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 19 |
Conread position: | 268-786 |
Cow position: | chr20:14806450-14806977 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 19 |
Conread position: | 268-787 |
Cow position: | chr20:12442133-12441606 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 18 |
Conread position: | 268-787 |
Cow position: | chr20:32846916-32847436 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 19 |
Conread position: | 268-791 |
Cow position: | chr20:398726-398211 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 20 |
Conread position: | 268-791 |
Cow position: | chr20:13269190-13269717 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 19 |
Conread position: | 272-683 |
Cow position: | chr20:22313589-22313188 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 15 |
Conread position: | 272-710 |
Cow position: | chr20:19363794-19363368 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 17 |
Conread position: | 272-786 |
Cow position: | chr20:23792169-23792694 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 15 |
Conread position: | 273-787 |
Cow position: | chr20:10235420-10235922 (view UCSC Genome Browser custom track) |
Alignm length: | 518 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 14 |
Conread position: | 276-703 |
Cow position: | chr20:3781861-3781436 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 11 |
Conread position: | 317-737 |
Cow position: | chr20:18321183-18320766 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 147 |
Conread position: | 319-785 |
Cow position: | chr20:5702362-5702813 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 144 |
Conread position: | 325-710 |
Cow position: | chr20:28982321-28982696 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 139 |
Conread position: | 374-787 |
Cow position: | chr20:31740543-31740128 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 298 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 61, 67 |
Conread position: | 382-787 |
Cow position: | chr20:19328080-19328479 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 11 |
Conread position: | 393-787 |
Cow position: | chr20:39398168-39398572 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 134 |
Conread position: | 403-787 |
Cow position: | chr20:13751944-13752316 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 60 |
Conread position: | 406-696 |
Cow position: | chr20:25009939-25009656 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 212 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 133, 57 |
Conread position: | 411-698 |
Cow position: | chr20:15761241-15760962 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 205 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 80, 51 |
Conread position: | 460-787 |
Cow position: | chr20:38768713-38768372 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 255 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 29, 145 |
Conread position: | 493-674 |
Cow position: | chr20:22029720-22029903 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 145 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 499-701 |
Cow position: | chr20:13465306-13465498 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 145 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 40, 99 |
Conread position: | 499-704 |
Cow position: | chr20:35364840-35365036 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 156 |
Alignm E-value: | 9e-31 |
Alignm gaps (pig, cow): | 40, 18 |
Conread position: | 499-709 |
Cow position: | chr20:20471578-20471778 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 152 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 28, 49 |
Conread position: | 499-719 |
Cow position: | chr20:18551151-18551369 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 168 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 39, 60 |
Conread position: | 499-728 |
Cow position: | chr20:3331506-3331272 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 173 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 499-729 |
Cow position: | chr20:28296078-28296308 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 174 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 40, 86 |
Conread position: | 499-786 |
Cow position: | chr20:14735465-14735759 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 20 |
Conread position: | 499-787 |
Cow position: | chr20:12420833-12420527 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 104 |
Conread position: | 500-787 |
Cow position: | chr20:23505618-23505919 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 19 |
Conread position: | 501-786 |
Cow position: | chr20:22235104-22235397 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 89 |
Conread position: | 508-785 |
Cow position: | chr20:382330-382043 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 216 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 30, 156 |
Conread position: | 509-710 |
Cow position: | chr20:5826735-5826938 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 160 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 513-719 |
Cow position: | chr20:15593098-15593301 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 171 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 83 |
Conread position: | 517-709 |
Cow position: | chr20:9923403-9923579 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 146 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 21, 59 |
Conread position: | 518-787 |
Cow position: | chr20:20967147-20967412 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 199 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 20, 52 |
Conread position: | 519-776 |
Cow position: | chr20:12239872-12239600 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 191 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 533-781 |
Cow position: | chr20:2204842-2204600 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 187 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 175, 73 |
Conread position: | 540-787 |
Cow position: | chr20:3254878-3255127 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 188 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 28, 113 |
Conread position: | 542-709 |
Cow position: | chr20:7439017-7438857 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 132 |
Alignm E-value: | 8e-30 |
Alignm gaps (pig, cow): | 132, 25 |
Conread position: | 546-791 |
Cow position: | chr20:13652521-13652272 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 176 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 101, 39 |
Conread position: | 554-787 |
Cow position: | chr20:10789022-10788799 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 183 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 159, 34 |
Conread position: | 561-710 |
Cow position: | chr20:8307864-8308016 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 114 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 108, 0 |
Conread position: | 561-786 |
Cow position: | chr20:28441177-28441417 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 183 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 115, 106 |
Conread position: | 572-787 |
Cow position: | chr20:35407719-35407942 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 166 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 16, 190 |
Conread position: | 576-785 |
Cow position: | chr20:2298911-2298697 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 165 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 102, 19 |
Conread position: | 585-750 |
Cow position: | chr20:3069208-3069047 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 126 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 89, 111 |
Conread position: | 591-786 |
Cow position: | chr20:8546941-8547158 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 163 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 7, 0 |
Conread position: | 602-729 |
Cow position: | chr20:39267071-39266940 (view UCSC Genome Browser custom track) |
Alignm length: | 132 |
Alignm identity: | 103 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 72, 0 |
Conread position: | 617-787 |
Cow position: | chr20:7738323-7738140 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 136 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 57, 0 |
Conread position: | 626-787 |
Cow position: | chr20:26077745-26077577 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 133 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.