Cow genome map


           Conread name:
           Tra1-TCH01A040030
        

               Conread position:
               252-728
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               287, 14
               

               Conread position:
               254-710
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 14
               

               Conread position:
               266-709
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               312
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               28, 21
               

               Conread position:
               267-461
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               32, 21
               

               Conread position:
               267-704
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               301
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               96, 22
               

               Conread position:
               267-776
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 20
               

               Conread position:
               267-784
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 22
               

               Conread position:
               267-786
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 17
               

               Conread position:
               267-787
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 19
               

               Conread position:
               268-638
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 18
               

               Conread position:
               268-650
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 20
               

               Conread position:
               268-679
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 17
               

               Conread position:
               268-698
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 19
               

               Conread position:
               268-704
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-706
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-719
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               268-719
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-720
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 19
               

               Conread position:
               268-737
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-737
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 19
               

               Conread position:
               268-741
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 77
               

               Conread position:
               268-776
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 167
               

               Conread position:
               268-776
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               256, 19
               

               Conread position:
               268-781
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 197
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 19
               

               Conread position:
               268-787
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               269-709
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 18
               

               Conread position:
               272-710
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 15
               

               Conread position:
               272-722
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 17
               

               Conread position:
               273-786
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 14
               

               Conread position:
               274-787
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 13
               

               Conread position:
               287-706
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 183
               

               Conread position:
               289-704
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 105
               

               Conread position:
               298-779
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 165
               

               Conread position:
               299-710
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 39
               

               Conread position:
               305-728
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 158
               

               Conread position:
               322-687
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 33
               

               Conread position:
               322-709
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 38
               

               Conread position:
               340-787
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 61
               

               Conread position:
               352-719
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 111
               

               Conread position:
               355-709
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 118
               

               Conread position:
               356-719
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 107
               

               Conread position:
               357-709
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 106
               

               Conread position:
               357-750
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 50
               

               Conread position:
               359-718
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 269
               

               Conread position:
               360-719
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 6
               

               Conread position:
               366-709
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 98
               

               Conread position:
               367-718
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 96
               

               Conread position:
               368-787
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 6
               

               Conread position:
               369-724
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 69
               

               Conread position:
               373-709
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 86
               

               Conread position:
               375-710
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 18
               

               Conread position:
               384-710
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               395-720
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 67
               

               Conread position:
               422-786
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               259
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               254, 26
               

               Conread position:
               426-710
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               113, 37
               

               Conread position:
               496-709
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               42, 100
               

               Conread position:
               496-787
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               499-679
               

               Cow position:
               
               

               Alignm length:
               183
               

               Alignm identity:
               148
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               499-697
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               499-699
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               44, 26
               

               Conread position:
               499-706
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               169
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               14, 60
               

               Conread position:
               499-709
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               499-710
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               41, 87
               

               Conread position:
               499-710
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               170
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               499-710
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               499-715
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               40, 28
               

               Conread position:
               499-719
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               499-719
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               499-736
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               27, 120
               

               Conread position:
               499-786
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               40, 25
               

               Conread position:
               499-787
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 216
               

               Conread position:
               500-703
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               25, 99
               

               Conread position:
               501-697
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               37, 53
               

               Conread position:
               501-709
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               38, 18
               

               Conread position:
               501-710
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 7
               

               Conread position:
               501-710
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               501-710
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 43
               

               Conread position:
               501-787
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               214
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               38, 144
               

               Conread position:
               508-718
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               161
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               34, 136
               

               Conread position:
               508-775
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               204
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               32, 65
               

               Conread position:
               509-719
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               165
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               30, 87
               

               Conread position:
               513-787
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 99
               

               Conread position:
               522-791
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               17, 47
               

               Conread position:
               529-783
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               148, 9
               

               Conread position:
               529-787
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 22
               

               Conread position:
               537-675
               

               Cow position:
               
               

               Alignm length:
               139
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               537-738
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               137, 112
               

               Conread position:
               542-761
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               542-787
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               170, 11
               

               Conread position:
               543-720
               

               Cow position:
               
               

               Alignm length:
               179
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               131, 38
               

               Conread position:
               545-785
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               129, 25
               

               Conread position:
               554-737
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               120, 89
               

               Conread position:
               563-787
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               177
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               111, 177
               

               Conread position:
               570-736
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               75, 0
               
Show alignments to all cow chromosomes.