Cow genome map

Conread name: Tra1-TCH01A040030

Conread position: 252-728
Cow position: chr21:36163386-36162924 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 14

Conread position: 254-710
Cow position: chr21:27230220-27229776 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 14

Conread position: 266-709
Cow position: chr21:13089890-13089453 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 312
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 28, 21

Conread position: 267-461
Cow position: chr21:49662838-49662639 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 32, 21

Conread position: 267-704
Cow position: chr21:9863041-9862633 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 301
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 96, 22

Conread position: 267-776
Cow position: chr21:28210769-28211296 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 20

Conread position: 267-784
Cow position: chr21:33209784-33210297 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 22

Conread position: 267-786
Cow position: chr21:37299050-37299573 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 267-787
Cow position: chr21:28442319-28442844 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 19

Conread position: 268-638
Cow position: chr21:11195717-11196081 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 18

Conread position: 268-650
Cow position: chr21:46132412-46132021 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 20

Conread position: 268-679
Cow position: chr21:47429254-47429663 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 268-698
Cow position: chr21:8126201-8125798 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 19

Conread position: 268-704
Cow position: chr21:23683126-23683560 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-706
Cow position: chr21:750322-750755 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-719
Cow position: chr21:393606-394047 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 268-719
Cow position: chr21:725304-724858 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-720
Cow position: chr21:33729019-33729458 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 19

Conread position: 268-737
Cow position: chr21:22855806-22856265 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-737
Cow position: chr21:29069734-29069283 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 19

Conread position: 268-741
Cow position: chr21:22719190-22718735 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 77

Conread position: 268-776
Cow position: chr21:30250621-30250100 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 167

Conread position: 268-776
Cow position: chr21:33983225-33982706 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 19

Conread position: 268-781
Cow position: chr21:28512125-28512620 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 268-787
Cow position: chr21:81657-82179 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 19

Conread position: 268-787
Cow position: chr21:20262752-20262223 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 197

Conread position: 268-787
Cow position: chr21:24130670-24131181 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 19

Conread position: 268-787
Cow position: chr21:32297918-32297407 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 269-709
Cow position: chr21:48484855-48484430 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 18

Conread position: 272-710
Cow position: chr21:31691084-31691500 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 272-722
Cow position: chr21:7564734-7564286 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 273-786
Cow position: chr21:12365976-12366482 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 14

Conread position: 274-787
Cow position: chr21:29214565-29214048 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 13

Conread position: 287-706
Cow position: chr21:39401196-39401608 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 183

Conread position: 289-704
Cow position: chr21:2366945-2367346 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 105

Conread position: 298-779
Cow position: chr21:33263465-33263948 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 165

Conread position: 299-710
Cow position: chr21:12616758-12617155 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 39

Conread position: 305-728
Cow position: chr21:16612250-16612661 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 158

Conread position: 322-687
Cow position: chr21:30990628-30990275 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 33

Conread position: 322-709
Cow position: chr21:23984645-23984264 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 38

Conread position: 340-787
Cow position: chr21:641243-641699 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 61

Conread position: 352-719
Cow position: chr21:24857979-24858341 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 111

Conread position: 355-709
Cow position: chr21:8985220-8985563 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 118

Conread position: 356-719
Cow position: chr21:38120775-38121127 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 107

Conread position: 357-709
Cow position: chr21:395551-395887 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 106

Conread position: 357-750
Cow position: chr21:7132788-7132403 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 50

Conread position: 359-718
Cow position: chr21:11645310-11644944 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 269

Conread position: 360-719
Cow position: chr21:47760454-47760796 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 6

Conread position: 366-709
Cow position: chr21:44755096-44754762 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 98

Conread position: 367-718
Cow position: chr21:28993943-28993595 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 96

Conread position: 368-787
Cow position: chr21:2679244-2679669 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 6

Conread position: 369-724
Cow position: chr21:40786356-40786710 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 69

Conread position: 373-709
Cow position: chr21:46849430-46849110 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 86

Conread position: 375-710
Cow position: chr21:11740439-11740103 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 18

Conread position: 384-710
Cow position: chr21:12961213-12960883 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 16

Conread position: 395-720
Cow position: chr21:36297190-36297519 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 67

Conread position: 422-786
Cow position: chr21:3585618-3585257 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 259
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 254, 26

Conread position: 426-710
Cow position: chr21:23150277-23150004 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 113, 37

Conread position: 496-709
Cow position: chr21:28944558-28944348 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 42, 100

Conread position: 496-787
Cow position: chr21:41597621-41597923 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 499-679
Cow position: chr21:42465638-42465820 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 148
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 39, 0

Conread position: 499-697
Cow position: chr21:32665963-32665769 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 499-699
Cow position: chr21:18378654-18378844 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 26

Conread position: 499-706
Cow position: chr21:21077138-21077340 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 169
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 14, 60

Conread position: 499-709
Cow position: chr21:34739658-34739859 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 20

Conread position: 499-710
Cow position: chr21:16166824-16166625 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 41, 87

Conread position: 499-710
Cow position: chr21:42135815-42135602 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 499-710
Cow position: chr21:45850901-45850694 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 20

Conread position: 499-715
Cow position: chr21:14464386-14464607 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 40, 28

Conread position: 499-719
Cow position: chr21:1558435-1558658 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 499-719
Cow position: chr21:29484793-29485007 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 20

Conread position: 499-736
Cow position: chr21:42145725-42145958 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 27, 120

Conread position: 499-786
Cow position: chr21:10601559-10601264 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 40, 25

Conread position: 499-787
Cow position: chr21:42348869-42348581 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 216

Conread position: 500-703
Cow position: chr21:13365151-13365351 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 25, 99

Conread position: 501-697
Cow position: chr21:18942018-18941827 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 37, 53

Conread position: 501-709
Cow position: chr21:1591362-1591569 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 38, 18

Conread position: 501-710
Cow position: chr21:13488331-13488540 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 7

Conread position: 501-710
Cow position: chr21:22860813-22861017 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 501-710
Cow position: chr21:28626052-28626258 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 43

Conread position: 501-787
Cow position: chr21:13410012-13409719 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 214
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 38, 144

Conread position: 508-718
Cow position: chr21:48251212-48251001 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 34, 136

Conread position: 508-775
Cow position: chr21:47215363-47215092 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 32, 65

Conread position: 509-719
Cow position: chr21:42023943-42024149 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 30, 87

Conread position: 513-787
Cow position: chr21:19363641-19363347 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 99

Conread position: 522-791
Cow position: chr21:46860270-46860006 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 17, 47

Conread position: 529-783
Cow position: chr21:7825333-7825084 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 148, 9

Conread position: 529-787
Cow position: chr21:27624551-27624810 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 22

Conread position: 537-675
Cow position: chr21:14125893-14126030 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 117
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 74, 0

Conread position: 537-738
Cow position: chr21:41455103-41454903 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 137, 112

Conread position: 542-761
Cow position: chr21:14515697-14515927 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 13, 0

Conread position: 542-787
Cow position: chr21:30222196-30222457 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 192
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 170, 11

Conread position: 543-720
Cow position: chr21:18041989-18041820 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 143
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 131, 38

Conread position: 545-785
Cow position: chr21:35354393-35354641 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 129, 25

Conread position: 554-737
Cow position: chr21:17856408-17856584 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 120, 89

Conread position: 563-787
Cow position: chr21:27810278-27810499 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 177
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 111, 177

Conread position: 570-736
Cow position: chr21:18155693-18155523 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 0

Show alignments to all cow chromosomes.