Cow genome map
| Conread name: | Tra1-TCH01A040030 |
| Conread position: | 252-709 |
| Cow position: | chr23:30663118-30662677 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 267-706 |
| Cow position: | chr23:11844824-11845228 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 268-417 |
| Cow position: | chr23:4487232-4487083 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 268-433 |
| Cow position: | chr23:2408481-2408316 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 268-704 |
| Cow position: | chr23:1428325-1428760 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 25 |
| Conread position: | 268-709 |
| Cow position: | chr23:406636-406217 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 268-709 |
| Cow position: | chr23:13598876-13599300 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 268-709 |
| Cow position: | chr23:36129378-36128950 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 268-710 |
| Cow position: | chr23:14191073-14191509 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 268-710 |
| Cow position: | chr23:39775232-39775681 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 268-729 |
| Cow position: | chr23:1604749-1605204 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 268-737 |
| Cow position: | chr23:8959122-8959579 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 268-772 |
| Cow position: | chr23:9268111-9268619 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 268-780 |
| Cow position: | chr23:13511259-13511766 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 268-786 |
| Cow position: | chr23:1721480-1720933 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 269-710 |
| Cow position: | chr23:41285462-41285873 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 272-787 |
| Cow position: | chr23:39049884-39049388 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 274-787 |
| Cow position: | chr23:8697974-8698471 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 275-461 |
| Cow position: | chr23:30656633-30656442 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 275-709 |
| Cow position: | chr23:3745136-3745564 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 287-706 |
| Cow position: | chr23:1289842-1290246 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 178 |
| Conread position: | 287-728 |
| Cow position: | chr23:18802733-18802297 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 177 |
| Conread position: | 303-774 |
| Cow position: | chr23:1700480-1700932 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 55 |
| Conread position: | 378-787 |
| Cow position: | chr23:24509335-24509744 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 86 |
| Conread position: | 382-714 |
| Cow position: | chr23:11404625-11404295 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 28 |
| Conread position: | 393-781 |
| Cow position: | chr23:8930464-8930092 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 108, 56 |
| Conread position: | 415-672 |
| Cow position: | chr23:1664360-1664608 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 124, 48 |
| Conread position: | 460-787 |
| Cow position: | chr23:21453024-21452679 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 479-709 |
| Cow position: | chr23:17000431-17000663 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 499-702 |
| Cow position: | chr23:1605426-1605625 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 40, 97 |
| Conread position: | 499-705 |
| Cow position: | chr23:14662249-14662053 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 499-706 |
| Cow position: | chr23:19538247-19538043 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 40, 149 |
| Conread position: | 499-710 |
| Cow position: | chr23:24867049-24867262 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 499-710 |
| Cow position: | chr23:29626161-29626371 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 40, 90 |
| Conread position: | 499-710 |
| Cow position: | chr23:37224319-37224111 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 499-728 |
| Cow position: | chr23:2282427-2282199 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 499-787 |
| Cow position: | chr23:3967800-3967509 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 212, 36 |
| Conread position: | 499-787 |
| Cow position: | chr23:4810497-4810791 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 40, 103 |
| Conread position: | 499-787 |
| Cow position: | chr23:29459341-29459048 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 499-788 |
| Cow position: | chr23:16563589-16563890 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 80 |
| Conread position: | 500-787 |
| Cow position: | chr23:16881409-16881112 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 501-737 |
| Cow position: | chr23:33696026-33695789 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 38, 144 |
| Conread position: | 507-710 |
| Cow position: | chr23:33717789-33717584 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 508-717 |
| Cow position: | chr23:26849145-26848943 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 508-787 |
| Cow position: | chr23:11315261-11314984 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 80 |
| Conread position: | 509-787 |
| Cow position: | chr23:5706756-5707044 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 510-709 |
| Cow position: | chr23:16237502-16237296 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 513-787 |
| Cow position: | chr23:1878110-1877845 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 96 |
| Conread position: | 516-740 |
| Cow position: | chr23:14417923-14417695 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 519-787 |
| Cow position: | chr23:8063321-8063595 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 533-785 |
| Cow position: | chr23:1489837-1490089 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 5, 48 |
| Conread position: | 537-749 |
| Cow position: | chr23:2457248-2457463 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 137, 145 |
| Conread position: | 546-718 |
| Cow position: | chr23:4646308-4646476 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 161, 123 |
| Conread position: | 555-710 |
| Cow position: | chr23:5426231-5426387 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 555-785 |
| Cow position: | chr23:1585585-1585350 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 119, 129 |
| Conread position: | 582-786 |
| Cow position: | chr23:3282289-3282072 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 585-787 |
| Cow position: | chr23:16744377-16744597 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 212 |
| Conread position: | 590-785 |
| Cow position: | chr23:7360953-7361155 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 604-791 |
| Cow position: | chr23:34611621-34611436 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 68 |
| Conread position: | 612-787 |
| Cow position: | chr23:12363761-12363567 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 652-787 |
| Cow position: | chr23:24685149-24685295 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 22, 111 |
Show alignments to all cow chromosomes.