Cow genome map
| Conread name: | Tra1-TCH01A040030 |
| Conread position: | 266-787 |
| Cow position: | chr24:6149527-6150047 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 267-709 |
| Cow position: | chr24:19466435-19465992 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 16 |
| Conread position: | 267-710 |
| Cow position: | chr24:16557158-16556709 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 20 |
| Conread position: | 268-457 |
| Cow position: | chr24:40206339-40206527 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 268-715 |
| Cow position: | chr24:16558187-16557743 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 268-715 |
| Cow position: | chr24:33239056-33238606 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 268-785 |
| Cow position: | chr24:24250220-24250744 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 268-787 |
| Cow position: | chr24:27845024-27844504 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 268-787 |
| Cow position: | chr24:28303854-28303341 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 269-710 |
| Cow position: | chr24:31811685-31812117 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 269-719 |
| Cow position: | chr24:11876379-11876824 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 273-787 |
| Cow position: | chr24:202132-201613 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 274-593 |
| Cow position: | chr24:27732660-27732338 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 82, 209 |
| Conread position: | 285-787 |
| Cow position: | chr24:29064131-29063635 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 168 |
| Conread position: | 287-706 |
| Cow position: | chr24:17105050-17104646 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 298-786 |
| Cow position: | chr24:5141458-5141965 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 233 |
| Conread position: | 341-710 |
| Cow position: | chr24:29180470-29180818 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 122 |
| Conread position: | 346-710 |
| Cow position: | chr24:211555-211915 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 117 |
| Conread position: | 348-781 |
| Cow position: | chr24:37246642-37246205 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 115 |
| Conread position: | 348-785 |
| Cow position: | chr24:3493472-3493906 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 45 |
| Conread position: | 349-705 |
| Cow position: | chr24:30235455-30235792 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 354-785 |
| Cow position: | chr24:2402793-2402346 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 18 |
| Conread position: | 356-787 |
| Cow position: | chr24:32054254-32054685 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 110 |
| Conread position: | 357-719 |
| Cow position: | chr24:28497003-28496645 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 106 |
| Conread position: | 374-759 |
| Cow position: | chr24:274238-273856 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 161, 89 |
| Conread position: | 393-728 |
| Cow position: | chr24:33153409-33153725 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 42 |
| Conread position: | 401-718 |
| Cow position: | chr24:20874309-20874618 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 52 |
| Conread position: | 404-699 |
| Cow position: | chr24:20923234-20923505 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 412-787 |
| Cow position: | chr24:24491370-24490993 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 62 |
| Conread position: | 413-723 |
| Cow position: | chr24:29027693-29027988 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 126, 49 |
| Conread position: | 490-719 |
| Cow position: | chr24:36404435-36404205 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 493-783 |
| Cow position: | chr24:42380989-42380713 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 496-785 |
| Cow position: | chr24:29170683-29170985 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 42, 106 |
| Conread position: | 498-709 |
| Cow position: | chr24:39681575-39681783 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 98 |
| Conread position: | 499-697 |
| Cow position: | chr24:39955325-39955126 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 499-709 |
| Cow position: | chr24:39350487-39350289 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 499-710 |
| Cow position: | chr24:17860530-17860331 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 499-710 |
| Cow position: | chr24:27941287-27941079 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 499-710 |
| Cow position: | chr24:30177957-30178165 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 499-718 |
| Cow position: | chr24:37650391-37650609 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 499-719 |
| Cow position: | chr24:28699778-28699991 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 499-776 |
| Cow position: | chr24:15057124-15057412 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 499-785 |
| Cow position: | chr24:38347400-38347696 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 499-787 |
| Cow position: | chr24:31816306-31816602 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 128 |
| Conread position: | 499-787 |
| Cow position: | chr24:35675264-35675563 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 124 |
| Conread position: | 499-788 |
| Cow position: | chr24:27748375-27748665 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 502-709 |
| Cow position: | chr24:19769222-19769417 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 508-717 |
| Cow position: | chr24:42345279-42345065 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 508-786 |
| Cow position: | chr24:1269534-1269806 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 80 |
| Conread position: | 513-782 |
| Cow position: | chr24:45004689-45004966 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 25, 104 |
| Conread position: | 513-785 |
| Cow position: | chr24:23695162-23694883 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 167 |
| Conread position: | 516-727 |
| Cow position: | chr24:23442843-23442640 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 528-710 |
| Cow position: | chr24:6487670-6487847 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 46 |
| Conread position: | 539-787 |
| Cow position: | chr24:33222178-33221916 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 135, 58 |
| Conread position: | 541-719 |
| Cow position: | chr24:18343812-18343991 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 59 |
| Conread position: | 553-735 |
| Cow position: | chr24:3663940-3664122 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 92, 113 |
| Conread position: | 554-707 |
| Cow position: | chr24:31036134-31036276 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 555-785 |
| Cow position: | chr24:29540133-29539908 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 158 |
| Conread position: | 562-710 |
| Cow position: | chr24:17938544-17938691 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 112, 50 |
| Conread position: | 570-785 |
| Cow position: | chr24:28990358-28990583 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 142, 46 |
| Conread position: | 582-787 |
| Cow position: | chr24:18355024-18355232 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 38, 7 |
| Conread position: | 604-706 |
| Cow position: | chr24:18357230-18357129 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 60 |
| Conread position: | 605-710 |
| Cow position: | chr24:37037723-37037827 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 619-787 |
| Cow position: | chr24:17492153-17492322 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 48 |
Show alignments to all cow chromosomes.