Cow genome map
| Conread name: | Tra1-TCH01A040030 |
| Conread position: | 254-722 |
| Cow position: | chr25:2135870-2136319 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 255-710 |
| Cow position: | chr25:22314707-22315151 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 268-437 |
| Cow position: | chr25:22760414-22760584 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 268-461 |
| Cow position: | chr25:38135241-38135436 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 268-613 |
| Cow position: | chr25:34343387-34343040 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 268-703 |
| Cow position: | chr25:18294797-18294369 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 268-706 |
| Cow position: | chr25:8482795-8482359 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 268-709 |
| Cow position: | chr25:36779014-36779448 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 194 |
| Conread position: | 268-787 |
| Cow position: | chr25:16922275-16921751 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 268-787 |
| Cow position: | chr25:26238391-26238908 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 270-787 |
| Cow position: | chr25:11662293-11661772 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 272-698 |
| Cow position: | chr25:27531743-27531334 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 272-728 |
| Cow position: | chr25:24572592-24573038 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 272-787 |
| Cow position: | chr25:6226574-6227081 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 272-788 |
| Cow position: | chr25:35347427-35347950 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 276-430 |
| Cow position: | chr25:23571452-23571298 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 292-718 |
| Cow position: | chr25:36746905-36746488 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 94 |
| Conread position: | 315-711 |
| Cow position: | chr25:7641882-7641501 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 32 |
| Conread position: | 322-709 |
| Cow position: | chr25:7216394-7216781 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 147 |
| Conread position: | 322-710 |
| Cow position: | chr25:7800708-7801091 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 141 |
| Conread position: | 335-780 |
| Cow position: | chr25:32191251-32191700 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 359-706 |
| Cow position: | chr25:21193334-21192986 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 104 |
| Conread position: | 363-787 |
| Cow position: | chr25:4680855-4681276 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 14 |
| Conread position: | 383-710 |
| Cow position: | chr25:6683427-6683112 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 42 |
| Conread position: | 395-709 |
| Cow position: | chr25:10137751-10138042 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 396-787 |
| Cow position: | chr25:15273336-15273719 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 67 |
| Conread position: | 427-791 |
| Cow position: | chr25:17975690-17975328 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 36 |
| Conread position: | 499-709 |
| Cow position: | chr25:27504442-27504226 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 499-786 |
| Cow position: | chr25:7306041-7306337 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 499-787 |
| Cow position: | chr25:9990347-9990064 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 499-787 |
| Cow position: | chr25:12117243-12116953 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 175, 39 |
| Conread position: | 501-710 |
| Cow position: | chr25:20023652-20023437 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 501-772 |
| Cow position: | chr25:18935130-18934868 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 508-787 |
| Cow position: | chr25:24669678-24669398 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 520-787 |
| Cow position: | chr25:61421-61696 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 521-742 |
| Cow position: | chr25:15286775-15286557 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 522-709 |
| Cow position: | chr25:14467319-14467128 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 525-785 |
| Cow position: | chr25:19478456-19478719 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 129 |
| Conread position: | 525-787 |
| Cow position: | chr25:20785815-20785540 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 71 |
| Conread position: | 526-710 |
| Cow position: | chr25:36033206-36033390 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 528-709 |
| Cow position: | chr25:34169726-34169898 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 537-728 |
| Cow position: | chr25:12899537-12899728 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 154 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 137, 13 |
| Conread position: | 538-787 |
| Cow position: | chr25:7007699-7007958 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 167, 46 |
| Conread position: | 540-710 |
| Cow position: | chr25:12319553-12319395 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 137, 45 |
| Conread position: | 547-703 |
| Cow position: | chr25:26270142-26269994 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 48 |
| Conread position: | 549-787 |
| Cow position: | chr25:22178715-22178962 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 124, 38 |
| Conread position: | 554-790 |
| Cow position: | chr25:7750249-7750501 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 559-720 |
| Cow position: | chr25:25861556-25861395 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 93 |
| Conread position: | 562-786 |
| Cow position: | chr25:14720559-14720789 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 597-785 |
| Cow position: | chr25:41151122-41150922 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 597-787 |
| Cow position: | chr25:26679066-26679272 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 598-787 |
| Cow position: | chr25:30065041-30064867 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 622-786 |
| Cow position: | chr25:4245553-4245722 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 55 |
| Conread position: | 626-785 |
| Cow position: | chr25:7449675-7449844 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 48, 30 |
Show alignments to all cow chromosomes.