Cow genome map
| Conread name: | Tra1-TCH01A040030 |
| Conread position: | 251-706 |
| Cow position: | chr27:2298865-2298413 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 252-709 |
| Cow position: | chr27:4664927-4664484 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 311 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 259-710 |
| Cow position: | chr27:815809-815368 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 267-706 |
| Cow position: | chr27:26595874-26595426 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 268-423 |
| Cow position: | chr27:10980429-10980274 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 268-453 |
| Cow position: | chr27:16428389-16428582 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 268-461 |
| Cow position: | chr27:15668035-15668231 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 268-461 |
| Cow position: | chr27:20001081-20000888 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 268-646 |
| Cow position: | chr27:12239880-12240250 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 268-709 |
| Cow position: | chr27:22418331-22418764 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 268-709 |
| Cow position: | chr27:30561363-30560917 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 268-715 |
| Cow position: | chr27:4882044-4881600 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 268-717 |
| Cow position: | chr27:21408114-21408566 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 268-719 |
| Cow position: | chr27:17473257-17472802 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 268-776 |
| Cow position: | chr27:22179353-22179850 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 19 |
| Conread position: | 268-787 |
| Cow position: | chr27:15315924-15315427 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 19 |
| Conread position: | 268-787 |
| Cow position: | chr27:22034951-22035469 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 19 |
| Conread position: | 272-442 |
| Cow position: | chr27:17923647-17923823 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 272-709 |
| Cow position: | chr27:13876157-13875734 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 21 |
| Conread position: | 272-728 |
| Cow position: | chr27:1123454-1123015 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 272-787 |
| Cow position: | chr27:19388458-19387927 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 289-706 |
| Cow position: | chr27:22330239-22330665 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 14 |
| Conread position: | 293-705 |
| Cow position: | chr27:6454632-6454218 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 178 |
| Conread position: | 298-709 |
| Cow position: | chr27:23454744-23455152 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 165 |
| Conread position: | 315-776 |
| Cow position: | chr27:8353857-8353395 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 96 |
| Conread position: | 357-717 |
| Cow position: | chr27:26427781-26428138 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 106 |
| Conread position: | 360-703 |
| Cow position: | chr27:23632940-23632605 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 287, 66 |
| Conread position: | 363-709 |
| Cow position: | chr27:8629533-8629870 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 100 |
| Conread position: | 369-787 |
| Cow position: | chr27:28207127-28206710 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 26 |
| Conread position: | 375-717 |
| Cow position: | chr27:4805581-4805910 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 26 |
| Conread position: | 403-706 |
| Cow position: | chr27:26424288-26424580 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 160, 60 |
| Conread position: | 464-704 |
| Cow position: | chr27:28164163-28164398 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 97 |
| Conread position: | 482-787 |
| Cow position: | chr27:22220782-22220462 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 193 |
| Conread position: | 494-715 |
| Cow position: | chr27:30406815-30407040 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 499-706 |
| Cow position: | chr27:6541836-6541635 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 499-711 |
| Cow position: | chr27:22771969-22771752 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 499-711 |
| Cow position: | chr27:27388817-27389017 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 499-718 |
| Cow position: | chr27:26440847-26441067 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 499-722 |
| Cow position: | chr27:16871708-16871924 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 499-727 |
| Cow position: | chr27:24321399-24321170 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 499-729 |
| Cow position: | chr27:10980075-10979844 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 39, 166 |
| Conread position: | 499-781 |
| Cow position: | chr27:26935707-26935982 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 499-785 |
| Cow position: | chr27:20553928-20553642 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 499-787 |
| Cow position: | chr27:7412594-7412301 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 196 |
| Conread position: | 499-787 |
| Cow position: | chr27:24014530-24014831 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 500-709 |
| Cow position: | chr27:31147463-31147667 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 39, 80 |
| Conread position: | 500-787 |
| Cow position: | chr27:28518495-28518204 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 500-787 |
| Cow position: | chr27:29493707-29493992 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 501-711 |
| Cow position: | chr27:16478139-16478338 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 176, 45 |
| Conread position: | 508-710 |
| Cow position: | chr27:1498516-1498319 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 508-722 |
| Cow position: | chr27:27055780-27055564 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 508-727 |
| Cow position: | chr27:11762537-11762751 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 137 |
| Conread position: | 516-709 |
| Cow position: | chr27:19589673-19589479 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 136 |
| Conread position: | 516-737 |
| Cow position: | chr27:20592178-20591955 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 23, 80 |
| Conread position: | 519-679 |
| Cow position: | chr27:23558194-23558355 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 522-773 |
| Cow position: | chr27:22547216-22547477 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 533-709 |
| Cow position: | chr27:154543-154368 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 141, 11 |
| Conread position: | 546-787 |
| Cow position: | chr27:4944365-4944606 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 115, 91 |
| Conread position: | 547-785 |
| Cow position: | chr27:27460410-27460662 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 126, 9 |
| Conread position: | 548-786 |
| Cow position: | chr27:29431622-29431378 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 126, 117 |
| Conread position: | 568-710 |
| Cow position: | chr27:17331644-17331501 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 569-710 |
| Cow position: | chr27:20789239-20789374 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 22 |
| Conread position: | 592-787 |
| Cow position: | chr27:22569893-22569692 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 607-787 |
| Cow position: | chr27:12191383-12191570 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 611-740 |
| Cow position: | chr27:22386972-22386841 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 619-710 |
| Cow position: | chr27:23511084-23510992 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 79 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.